Build branch main with version main (32cec14)

Build pipeline: viash-hub.craftbox.main-9qgjl Source commit: 32cec141fe Source message: Update README.qmd and render (#15)
2025-08-28 13:53:50 +00:00
parent 877514552b
commit c7d5e8d12b
26 changed files with 55 additions and 55 deletions
--- a/README.md
+++ b/README.md
@@ -43,7 +43,7 @@ Viash components in craftbox can be run in various ways:

 ``` mermaid lang="mermaid
 flowchart TD
-    A[craftbox v0.2.0] --> B(Viash Hub Launch)
+    A[craftbox v0.3.0] --> B(Viash Hub Launch)
    A --> C(Viash CLI)
    A --> D(Nextflow CLI)
    A --> E(Seqera Cloud)
@@ -53,7 +53,7 @@ flowchart TD
 ### 1. Via the Viash Hub Launch interface

 You can run this component directly from the Viash Hub [Launch
-interface](https://www.viash-hub.com/launch?package=craftbox&version=v0.2.0&component=concat_rtext&runner=Executable).
+interface](https://www.viash-hub.com/launch?package=craftbox&version=v0.3.0&component=concat_rtext&runner=Executable).

 ![](docs/viash-hub.png)

@@ -63,9 +63,9 @@ You can run this component directly from the command line using the
 Viash CLI.

 ``` bash
-viash run vsh://craftbox@v0.2.0/concat_rtext -- --help
+viash run vsh://craftbox@v0.3.0/concat_rtext -- --help

-viash run vsh://craftbox@v0.2.0/concat_rtext -- \
+viash run vsh://craftbox@v0.3.0/concat_rtext -- \
  --input path/to/input.txt \
  --input path/to/compressed.txt.gz \
  --output path/to/output.txt
@@ -80,7 +80,7 @@ You can run this component as a Nextflow pipeline.

 ``` bash
 nextflow run https://packages.viash-hub.com/vsh/craftbox \
-  -revision v0.2.0 \
+  -revision v0.3.0 \
  -main-script target/nextflow/concat_rtext/main.nf \
  -latest -resume \
  -profile docker \
@@ -109,7 +109,7 @@ component as a dependency:
 ``` yaml
 dependencies:
  - name: concat_rtext
-    repository: vsh://craftbox@v0.2.0
+    repository: vsh://craftbox@v0.3.0
 ```

 **Tip:** See the [Viash
--- a/README.qmd
+++ b/README.qmd
@@ -7,7 +7,7 @@ license <- paste0(package$links$repository, "/blob/main/LICENSE")
 contributing <- paste0(package$links$repository, "/blob/main/CONTRIBUTING.md")

 pkg <- package$name
-ver <- if (!is.null(package$version)) package$version else "v0.2.0"
+ver <- if (!is.null(package$version)) package$version else "v0.3.0"
 comp <- "concat_rtext"
 ```
 # 🪡📦 `r pkg`
--- a/target/executable/check_disk_space/.config.vsh.yaml
+++ b/target/executable/check_disk_space/.config.vsh.yaml
@@ -157,9 +157,9 @@ build_info:
  output: "target/executable/check_disk_space"
  executable: "target/executable/check_disk_space/check_disk_space"
  viash_version: "0.9.4"
-  git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+  git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-8-g952e20a"
+  git_tag: "v0.1.0-9-g32cec14"
 package_config:
  name: "craftbox"
  version: "main"
--- a/target/executable/check_disk_space/check_disk_space
+++ b/target/executable/check_disk_space/check_disk_space
@@ -446,9 +446,9 @@ function ViashDockerfile {
 FROM bash:latest
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component check_disk_space"
-LABEL org.opencontainers.image.created="2025-06-26T14:28:25Z"
+LABEL org.opencontainers.image.created="2025-08-28T13:47:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox"
-LABEL org.opencontainers.image.revision="952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+LABEL org.opencontainers.image.revision="32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/concat_text/.config.vsh.yaml
+++ b/target/executable/concat_text/.config.vsh.yaml
@@ -175,9 +175,9 @@ build_info:
  output: "target/executable/concat_text"
  executable: "target/executable/concat_text/concat_text"
  viash_version: "0.9.4"
-  git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+  git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-8-g952e20a"
+  git_tag: "v0.1.0-9-g32cec14"
 package_config:
  name: "craftbox"
  version: "main"
--- a/target/executable/concat_text/concat_text
+++ b/target/executable/concat_text/concat_text
@@ -453,9 +453,9 @@ RUN apk add --no-cache bash procps file

 LABEL org.opencontainers.image.authors="Toni Verbeiren, Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component concat_text"
-LABEL org.opencontainers.image.created="2025-06-26T14:28:24Z"
+LABEL org.opencontainers.image.created="2025-08-28T13:47:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox"
-LABEL org.opencontainers.image.revision="952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+LABEL org.opencontainers.image.revision="32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/csv2fasta/.config.vsh.yaml
+++ b/target/executable/csv2fasta/.config.vsh.yaml
@@ -257,9 +257,9 @@ build_info:
  output: "target/executable/csv2fasta"
  executable: "target/executable/csv2fasta/csv2fasta"
  viash_version: "0.9.4"
-  git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+  git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-8-g952e20a"
+  git_tag: "v0.1.0-9-g32cec14"
 package_config:
  name: "craftbox"
  version: "main"
--- a/target/executable/csv2fasta/csv2fasta
+++ b/target/executable/csv2fasta/csv2fasta
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component csv2fasta"
-LABEL org.opencontainers.image.created="2025-06-26T14:28:24Z"
+LABEL org.opencontainers.image.created="2025-08-28T13:47:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox"
-LABEL org.opencontainers.image.revision="952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+LABEL org.opencontainers.image.revision="32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/move_files_to_directory/.config.vsh.yaml
+++ b/target/executable/move_files_to_directory/.config.vsh.yaml
@@ -153,9 +153,9 @@ build_info:
  output: "target/executable/move_files_to_directory"
  executable: "target/executable/move_files_to_directory/move_files_to_directory"
  viash_version: "0.9.4"
-  git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+  git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-8-g952e20a"
+  git_tag: "v0.1.0-9-g32cec14"
 package_config:
  name: "craftbox"
  version: "main"
--- a/target/executable/move_files_to_directory/move_files_to_directory
+++ b/target/executable/move_files_to_directory/move_files_to_directory
@@ -454,9 +454,9 @@ RUN apt-get update && \

 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component move_files_to_directory"
-LABEL org.opencontainers.image.created="2025-06-26T14:28:25Z"
+LABEL org.opencontainers.image.created="2025-08-28T13:47:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox"
-LABEL org.opencontainers.image.revision="952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+LABEL org.opencontainers.image.revision="32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/sync_resources/.config.vsh.yaml
+++ b/target/executable/sync_resources/.config.vsh.yaml
@@ -197,9 +197,9 @@ build_info:
  output: "target/executable/sync_resources"
  executable: "target/executable/sync_resources/sync_resources"
  viash_version: "0.9.4"
-  git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+  git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-8-g952e20a"
+  git_tag: "v0.1.0-9-g32cec14"
 package_config:
  name: "craftbox"
  version: "main"
--- a/target/executable/sync_resources/sync_resources
+++ b/target/executable/sync_resources/sync_resources
@@ -455,9 +455,9 @@ RUN rclone config create s3 s3 anonymous=true
 RUN rclone config create gs gcs anonymous=true
 LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component sync_resources"
-LABEL org.opencontainers.image.created="2025-06-26T14:28:25Z"
+LABEL org.opencontainers.image.created="2025-08-28T13:47:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox"
-LABEL org.opencontainers.image.revision="952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+LABEL org.opencontainers.image.revision="32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/untar/.config.vsh.yaml
+++ b/target/executable/untar/.config.vsh.yaml
@@ -182,9 +182,9 @@ build_info:
  output: "target/executable/untar"
  executable: "target/executable/untar/untar"
  viash_version: "0.9.4"
-  git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+  git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-8-g952e20a"
+  git_tag: "v0.1.0-9-g32cec14"
 package_config:
  name: "craftbox"
  version: "main"
--- a/target/executable/untar/untar
+++ b/target/executable/untar/untar
@@ -455,9 +455,9 @@ RUN apt-get update && \

 LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component untar"
-LABEL org.opencontainers.image.created="2025-06-26T14:28:25Z"
+LABEL org.opencontainers.image.created="2025-08-28T13:47:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/craftbox"
-LABEL org.opencontainers.image.revision="952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+LABEL org.opencontainers.image.revision="32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/nextflow/check_disk_space/.config.vsh.yaml
+++ b/target/nextflow/check_disk_space/.config.vsh.yaml
@@ -157,9 +157,9 @@ build_info:
  output: "target/nextflow/check_disk_space"
  executable: "target/nextflow/check_disk_space/main.nf"
  viash_version: "0.9.4"
-  git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+  git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-8-g952e20a"
+  git_tag: "v0.1.0-9-g32cec14"
 package_config:
  name: "craftbox"
  version: "main"
--- a/target/nextflow/check_disk_space/main.nf
+++ b/target/nextflow/check_disk_space/main.nf
@@ -3216,9 +3216,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/check_disk_space",
    "viash_version" : "0.9.4",
-    "git_commit" : "952e20a6a88b08cfb46a57bfdb228d82c01e4748",
+    "git_commit" : "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550",
    "git_remote" : "https://github.com/viash-hub/craftbox",
-    "git_tag" : "v0.1.0-8-g952e20a"
+    "git_tag" : "v0.1.0-9-g32cec14"
  },
  "package_config" : {
    "name" : "craftbox",
--- a/target/nextflow/concat_text/.config.vsh.yaml
+++ b/target/nextflow/concat_text/.config.vsh.yaml
@@ -175,9 +175,9 @@ build_info:
  output: "target/nextflow/concat_text"
  executable: "target/nextflow/concat_text/main.nf"
  viash_version: "0.9.4"
-  git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+  git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-8-g952e20a"
+  git_tag: "v0.1.0-9-g32cec14"
 package_config:
  name: "craftbox"
  version: "main"
--- a/target/nextflow/concat_text/main.nf
+++ b/target/nextflow/concat_text/main.nf
@@ -3262,9 +3262,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/concat_text",
    "viash_version" : "0.9.4",
-    "git_commit" : "952e20a6a88b08cfb46a57bfdb228d82c01e4748",
+    "git_commit" : "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550",
    "git_remote" : "https://github.com/viash-hub/craftbox",
-    "git_tag" : "v0.1.0-8-g952e20a"
+    "git_tag" : "v0.1.0-9-g32cec14"
  },
  "package_config" : {
    "name" : "craftbox",
--- a/target/nextflow/csv2fasta/.config.vsh.yaml
+++ b/target/nextflow/csv2fasta/.config.vsh.yaml
@@ -257,9 +257,9 @@ build_info:
  output: "target/nextflow/csv2fasta"
  executable: "target/nextflow/csv2fasta/main.nf"
  viash_version: "0.9.4"
-  git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+  git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-8-g952e20a"
+  git_tag: "v0.1.0-9-g32cec14"
 package_config:
  name: "craftbox"
  version: "main"
--- a/target/nextflow/csv2fasta/main.nf
+++ b/target/nextflow/csv2fasta/main.nf
@@ -3352,9 +3352,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/csv2fasta",
    "viash_version" : "0.9.4",
-    "git_commit" : "952e20a6a88b08cfb46a57bfdb228d82c01e4748",
+    "git_commit" : "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550",
    "git_remote" : "https://github.com/viash-hub/craftbox",
-    "git_tag" : "v0.1.0-8-g952e20a"
+    "git_tag" : "v0.1.0-9-g32cec14"
  },
  "package_config" : {
    "name" : "craftbox",
--- a/target/nextflow/move_files_to_directory/.config.vsh.yaml
+++ b/target/nextflow/move_files_to_directory/.config.vsh.yaml
@@ -153,9 +153,9 @@ build_info:
  output: "target/nextflow/move_files_to_directory"
  executable: "target/nextflow/move_files_to_directory/main.nf"
  viash_version: "0.9.4"
-  git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+  git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-8-g952e20a"
+  git_tag: "v0.1.0-9-g32cec14"
 package_config:
  name: "craftbox"
  version: "main"
--- a/target/nextflow/move_files_to_directory/main.nf
+++ b/target/nextflow/move_files_to_directory/main.nf
@@ -3228,9 +3228,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/move_files_to_directory",
    "viash_version" : "0.9.4",
-    "git_commit" : "952e20a6a88b08cfb46a57bfdb228d82c01e4748",
+    "git_commit" : "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550",
    "git_remote" : "https://github.com/viash-hub/craftbox",
-    "git_tag" : "v0.1.0-8-g952e20a"
+    "git_tag" : "v0.1.0-9-g32cec14"
  },
  "package_config" : {
    "name" : "craftbox",
--- a/target/nextflow/sync_resources/.config.vsh.yaml
+++ b/target/nextflow/sync_resources/.config.vsh.yaml
@@ -197,9 +197,9 @@ build_info:
  output: "target/nextflow/sync_resources"
  executable: "target/nextflow/sync_resources/main.nf"
  viash_version: "0.9.4"
-  git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+  git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-8-g952e20a"
+  git_tag: "v0.1.0-9-g32cec14"
 package_config:
  name: "craftbox"
  version: "main"
--- a/target/nextflow/sync_resources/main.nf
+++ b/target/nextflow/sync_resources/main.nf
@@ -3294,9 +3294,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/sync_resources",
    "viash_version" : "0.9.4",
-    "git_commit" : "952e20a6a88b08cfb46a57bfdb228d82c01e4748",
+    "git_commit" : "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550",
    "git_remote" : "https://github.com/viash-hub/craftbox",
-    "git_tag" : "v0.1.0-8-g952e20a"
+    "git_tag" : "v0.1.0-9-g32cec14"
  },
  "package_config" : {
    "name" : "craftbox",
--- a/target/nextflow/untar/.config.vsh.yaml
+++ b/target/nextflow/untar/.config.vsh.yaml
@@ -182,9 +182,9 @@ build_info:
  output: "target/nextflow/untar"
  executable: "target/nextflow/untar/main.nf"
  viash_version: "0.9.4"
-  git_commit: "952e20a6a88b08cfb46a57bfdb228d82c01e4748"
+  git_commit: "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550"
  git_remote: "https://github.com/viash-hub/craftbox"
-  git_tag: "v0.1.0-8-g952e20a"
+  git_tag: "v0.1.0-9-g32cec14"
 package_config:
  name: "craftbox"
  version: "main"
--- a/target/nextflow/untar/main.nf
+++ b/target/nextflow/untar/main.nf
@@ -3273,9 +3273,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/untar",
    "viash_version" : "0.9.4",
-    "git_commit" : "952e20a6a88b08cfb46a57bfdb228d82c01e4748",
+    "git_commit" : "32cec141fe0eb61ce1b63f36a2e5c3ae2fbf9550",
    "git_remote" : "https://github.com/viash-hub/craftbox",
-    "git_tag" : "v0.1.0-8-g952e20a"
+    "git_tag" : "v0.1.0-9-g32cec14"
  },
  "package_config" : {
    "name" : "craftbox",