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Build branch main with version main (d3a9c9b)

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Build pipeline: viash-hub.demultiplex.main-gcqps

Source commit: d3a9c9b3be

Source message: Fix detection of sample names from Illumina V2 sample sheets (#28)
This commit is contained in:
CI
2024-12-11 14:22:44 +00:00
parent ef54635d93
commit 0e0262257b
22 changed files with 69 additions and 63 deletions
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6
target/nextflow/dataflow/combine_samples/.config.vsh.yaml
View File

@@ -139,9 +139,9 @@ build_info:
output: "target/nextflow/dataflow/combine_samples"
executable: "target/nextflow/dataflow/combine_samples/main.nf"
viash_version: "0.9.0"
git_commit: "b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
git_remote: "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-8-gb7e30f3"
git_commit: "d3a9c9b3be9790bf89258b14c9a8c83af945ad47"
git_remote: "https://x-access-token:ghs_LDdnPEXvHVhqremDw1GFS68naiYOck2oDbCt@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-9-gd3a9c9b"
package_config:
name: "demultiplex"
version: "main"

6
target/nextflow/dataflow/combine_samples/main.nf
View File

@@ -2972,9 +2972,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/dataflow/combine_samples",
"viash_version" : "0.9.0",
"git_commit" : "b7e30f394e7a4ae7a51961ade824e24ffe718e1f",
"git_remote" : "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-8-gb7e30f3"
"git_commit" : "d3a9c9b3be9790bf89258b14c9a8c83af945ad47",
"git_remote" : "https://x-access-token:ghs_LDdnPEXvHVhqremDw1GFS68naiYOck2oDbCt@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-9-gd3a9c9b"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml
View File

@@ -133,9 +133,9 @@ build_info:
output: "target/nextflow/dataflow/gather_fastqs_and_validate"
executable: "target/nextflow/dataflow/gather_fastqs_and_validate/main.nf"
viash_version: "0.9.0"
git_commit: "b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
git_remote: "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-8-gb7e30f3"
git_commit: "d3a9c9b3be9790bf89258b14c9a8c83af945ad47"
git_remote: "https://x-access-token:ghs_LDdnPEXvHVhqremDw1GFS68naiYOck2oDbCt@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-9-gd3a9c9b"
package_config:
name: "demultiplex"
version: "main"

12
target/nextflow/dataflow/gather_fastqs_and_validate/main.nf
View File

@@ -2965,9 +2965,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/dataflow/gather_fastqs_and_validate",
"viash_version" : "0.9.0",
"git_commit" : "b7e30f394e7a4ae7a51961ade824e24ffe718e1f",
"git_remote" : "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-8-gb7e30f3"
"git_commit" : "d3a9c9b3be9790bf89258b14c9a8c83af945ad47",
"git_remote" : "https://x-access-token:ghs_LDdnPEXvHVhqremDw1GFS68naiYOck2oDbCt@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-9-gd3a9c9b"
},
"package_config" : {
"name" : "demultiplex",
@@ -3042,9 +3042,9 @@ workflow run_wf {
println "Encountered next header '[${start_parsing}]', stopping parsing."
return true
}
// [Data] for illumina
// [Data], [BCLConvert_Data] for illumina
// [Samples] for Element Biosciences
if (header in ["Data", "Samples"]) {
if (header in ["Data", "Samples", "BCLConvert_Data"]) {
println "Found header [${header}], start parsing."
start_parsing = true
return
@@ -3069,7 +3069,7 @@ workflow run_wf {
return
}
assert start_parsing:
"Sample information file does not contain [Data] or [Samples] header!"
"Sample information file does not contain [Data], [Samples] or [BCLConvert_Data] header!"
assert samples.size() > 1:
"Sample information file does not seem to contain any information about the samples!"
println "Finished processing run information file, found samples: ${samples}."