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Build branch main with version main (b7e30f3)

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Build pipeline: viash-hub.demultiplex.main-b6qtk

Source commit: b7e30f394e

Source message: Revert 64a371e, update CHANGELOG for 0.3.0 (#26)
This commit is contained in:
CI
2024-12-11 09:30:29 +00:00
parent 73c077fd82
commit ef54635d93
21 changed files with 64 additions and 62 deletions
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12
CHANGELOG.md
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@@ -1,8 +1,4 @@
# demultiplex v0.2.0
## Breaking changes
* `demultiplex` workflow: renamed `sample_sheet` argument to `run_information` (PR #24)
# demultiplex v0.3.0
## Major updates
@@ -34,6 +30,12 @@ The default structure in the output directory is:
The `$publish_dir` variable corresponds to the argument provided with `--publish-dir`. The `date-time-stamp` is generated by the workflow based on when it was launched and is thus guaranteed to be unique.
# demultiplex v0.2.0
## Breaking changes
* `demultiplex` workflow: renamed `sample_sheet` argument to `run_information` (PR #24)
## New features
* Add support for `bases2fastq` demultiplexer (PR #24)

6
target/executable/io/interop_summary_to_csv/.config.vsh.yaml
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@@ -141,9 +141,9 @@ build_info:
output: "target/executable/io/interop_summary_to_csv"
executable: "target/executable/io/interop_summary_to_csv/interop_summary_to_csv"
viash_version: "0.9.0"
git_commit: "64a371e168472c987d9ec61b0373b0e28762dfcd"
git_remote: "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-7-g64a371e"
git_commit: "b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
git_remote: "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-8-gb7e30f3"
package_config:
name: "demultiplex"
version: "main"

4
target/executable/io/interop_summary_to_csv/interop_summary_to_csv
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@@ -470,9 +470,9 @@ tar -C /tmp/ --no-same-owner --no-same-permissions -xvf /tmp/interop.tar.gz && \
mv /tmp/interop-1.3.1-Linux-GNU/bin/index-summary /tmp/interop-1.3.1-Linux-GNU/bin/summary /usr/local/bin/
LABEL org.opencontainers.image.description="Companion container for running component io interop_summary_to_csv"
LABEL org.opencontainers.image.created="2024-12-11T08:48:31Z"
LABEL org.opencontainers.image.created="2024-12-11T09:14:04Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
LABEL org.opencontainers.image.revision="64a371e168472c987d9ec61b0373b0e28762dfcd"
LABEL org.opencontainers.image.revision="b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/io/publish/.config.vsh.yaml
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@@ -170,9 +170,9 @@ build_info:
output: "target/executable/io/publish"
executable: "target/executable/io/publish/publish"
viash_version: "0.9.0"
git_commit: "64a371e168472c987d9ec61b0373b0e28762dfcd"
git_remote: "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-7-g64a371e"
git_commit: "b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
git_remote: "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-8-gb7e30f3"
package_config:
name: "demultiplex"
version: "main"

4
target/executable/io/publish/publish
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@@ -482,9 +482,9 @@ RUN apt-get update && \
rm -rf /var/lib/apt/lists/*
LABEL org.opencontainers.image.description="Companion container for running component io publish"
LABEL org.opencontainers.image.created="2024-12-11T08:48:32Z"
LABEL org.opencontainers.image.created="2024-12-11T09:14:04Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
LABEL org.opencontainers.image.revision="64a371e168472c987d9ec61b0373b0e28762dfcd"
LABEL org.opencontainers.image.revision="b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/executable/io/untar/.config.vsh.yaml
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@@ -148,9 +148,9 @@ build_info:
output: "target/executable/io/untar"
executable: "target/executable/io/untar/untar"
viash_version: "0.9.0"
git_commit: "64a371e168472c987d9ec61b0373b0e28762dfcd"
git_remote: "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-7-g64a371e"
git_commit: "b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
git_remote: "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-8-gb7e30f3"
package_config:
name: "demultiplex"
version: "main"

4
target/executable/io/untar/untar
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@@ -476,9 +476,9 @@ RUN apt-get update && \
rm -rf /var/lib/apt/lists/*
LABEL org.opencontainers.image.description="Companion container for running component io untar"
LABEL org.opencontainers.image.created="2024-12-11T08:48:32Z"
LABEL org.opencontainers.image.created="2024-12-11T09:14:04Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
LABEL org.opencontainers.image.revision="64a371e168472c987d9ec61b0373b0e28762dfcd"
LABEL org.opencontainers.image.revision="b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

6
target/nextflow/dataflow/combine_samples/.config.vsh.yaml
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@@ -139,9 +139,9 @@ build_info:
output: "target/nextflow/dataflow/combine_samples"
executable: "target/nextflow/dataflow/combine_samples/main.nf"
viash_version: "0.9.0"
git_commit: "64a371e168472c987d9ec61b0373b0e28762dfcd"
git_remote: "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-7-g64a371e"
git_commit: "b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
git_remote: "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-8-gb7e30f3"
package_config:
name: "demultiplex"
version: "main"

6
target/nextflow/dataflow/combine_samples/main.nf
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@@ -2972,9 +2972,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/dataflow/combine_samples",
"viash_version" : "0.9.0",
"git_commit" : "64a371e168472c987d9ec61b0373b0e28762dfcd",
"git_remote" : "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-7-g64a371e"
"git_commit" : "b7e30f394e7a4ae7a51961ade824e24ffe718e1f",
"git_remote" : "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-8-gb7e30f3"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml
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@@ -133,9 +133,9 @@ build_info:
output: "target/nextflow/dataflow/gather_fastqs_and_validate"
executable: "target/nextflow/dataflow/gather_fastqs_and_validate/main.nf"
viash_version: "0.9.0"
git_commit: "64a371e168472c987d9ec61b0373b0e28762dfcd"
git_remote: "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-7-g64a371e"
git_commit: "b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
git_remote: "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-8-gb7e30f3"
package_config:
name: "demultiplex"
version: "main"

6
target/nextflow/dataflow/gather_fastqs_and_validate/main.nf
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@@ -2965,9 +2965,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/dataflow/gather_fastqs_and_validate",
"viash_version" : "0.9.0",
"git_commit" : "64a371e168472c987d9ec61b0373b0e28762dfcd",
"git_remote" : "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-7-g64a371e"
"git_commit" : "b7e30f394e7a4ae7a51961ade824e24ffe718e1f",
"git_remote" : "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-8-gb7e30f3"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/demultiplex/.config.vsh.yaml
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@@ -220,9 +220,9 @@ build_info:
output: "target/nextflow/demultiplex"
executable: "target/nextflow/demultiplex/main.nf"
viash_version: "0.9.0"
git_commit: "64a371e168472c987d9ec61b0373b0e28762dfcd"
git_remote: "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-7-g64a371e"
git_commit: "b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
git_remote: "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-8-gb7e30f3"
dependencies:
- "target/nextflow/io/untar"
- "target/nextflow/dataflow/gather_fastqs_and_validate"

6
target/nextflow/demultiplex/main.nf
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@@ -3088,9 +3088,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/demultiplex",
"viash_version" : "0.9.0",
"git_commit" : "64a371e168472c987d9ec61b0373b0e28762dfcd",
"git_remote" : "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-7-g64a371e"
"git_commit" : "b7e30f394e7a4ae7a51961ade824e24ffe718e1f",
"git_remote" : "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-8-gb7e30f3"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml
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@@ -141,9 +141,9 @@ build_info:
output: "target/nextflow/io/interop_summary_to_csv"
executable: "target/nextflow/io/interop_summary_to_csv/main.nf"
viash_version: "0.9.0"
git_commit: "64a371e168472c987d9ec61b0373b0e28762dfcd"
git_remote: "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-7-g64a371e"
git_commit: "b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
git_remote: "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-8-gb7e30f3"
package_config:
name: "demultiplex"
version: "main"

6
target/nextflow/io/interop_summary_to_csv/main.nf
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@@ -2977,9 +2977,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/io/interop_summary_to_csv",
"viash_version" : "0.9.0",
"git_commit" : "64a371e168472c987d9ec61b0373b0e28762dfcd",
"git_remote" : "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-7-g64a371e"
"git_commit" : "b7e30f394e7a4ae7a51961ade824e24ffe718e1f",
"git_remote" : "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-8-gb7e30f3"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/io/publish/.config.vsh.yaml
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@@ -170,9 +170,9 @@ build_info:
output: "target/nextflow/io/publish"
executable: "target/nextflow/io/publish/main.nf"
viash_version: "0.9.0"
git_commit: "64a371e168472c987d9ec61b0373b0e28762dfcd"
git_remote: "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-7-g64a371e"
git_commit: "b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
git_remote: "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-8-gb7e30f3"
package_config:
name: "demultiplex"
version: "main"

6
target/nextflow/io/publish/main.nf
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@@ -3012,9 +3012,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/io/publish",
"viash_version" : "0.9.0",
"git_commit" : "64a371e168472c987d9ec61b0373b0e28762dfcd",
"git_remote" : "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-7-g64a371e"
"git_commit" : "b7e30f394e7a4ae7a51961ade824e24ffe718e1f",
"git_remote" : "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-8-gb7e30f3"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/io/untar/.config.vsh.yaml
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@@ -148,9 +148,9 @@ build_info:
output: "target/nextflow/io/untar"
executable: "target/nextflow/io/untar/main.nf"
viash_version: "0.9.0"
git_commit: "64a371e168472c987d9ec61b0373b0e28762dfcd"
git_remote: "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-7-g64a371e"
git_commit: "b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
git_remote: "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-8-gb7e30f3"
package_config:
name: "demultiplex"
version: "main"

6
target/nextflow/io/untar/main.nf
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@@ -2989,9 +2989,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/io/untar",
"viash_version" : "0.9.0",
"git_commit" : "64a371e168472c987d9ec61b0373b0e28762dfcd",
"git_remote" : "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-7-g64a371e"
"git_commit" : "b7e30f394e7a4ae7a51961ade824e24ffe718e1f",
"git_remote" : "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-8-gb7e30f3"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/runner/.config.vsh.yaml
View File

@@ -156,9 +156,9 @@ build_info:
output: "target/nextflow/runner"
executable: "target/nextflow/runner/main.nf"
viash_version: "0.9.0"
git_commit: "64a371e168472c987d9ec61b0373b0e28762dfcd"
git_remote: "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-7-g64a371e"
git_commit: "b7e30f394e7a4ae7a51961ade824e24ffe718e1f"
git_remote: "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-8-gb7e30f3"
dependencies:
- "target/nextflow/demultiplex"
- "target/nextflow/io/publish"

6
target/nextflow/runner/main.nf
View File

@@ -3003,9 +3003,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/runner",
"viash_version" : "0.9.0",
"git_commit" : "64a371e168472c987d9ec61b0373b0e28762dfcd",
"git_remote" : "https://x-access-token:ghs_NEnBDPGgmRYfKlNL6VeMqiNleTP4aC2s2yz6@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-7-g64a371e"
"git_commit" : "b7e30f394e7a4ae7a51961ade824e24ffe718e1f",
"git_remote" : "https://x-access-token:ghs_PoDtMpilpQnn1Nk8WgE3ZAlxTrfk790lUeZy@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-8-gb7e30f3"
},
"package_config" : {
"name" : "demultiplex",