Build branch copycomplete_check with version copycomplete_check (4d8c825)

Build pipeline: viash-hub.demultiplex.copycomplete-check-6k5m4 Source commit: 4d8c825fdf Source message: Update CHANGELOG
2025-01-10 15:13:29 +00:00
parent 1010b49b40
commit 33e99f842d
21 changed files with 47 additions and 40 deletions
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,3 +1,10 @@
+# demultiplex v0.3.5
+
+## Minor updates
+
+* In case Illumina data is detected in the input folder, check for the presence of the 'copyComplete.txt' file.
+  This check can be disabled using `--skip_copycomplete_check` (PR #34).
+
 # demultiplex v0.3.4

 ## Minor updates
--- a/target/executable/io/interop_summary_to_csv/.config.vsh.yaml
+++ b/target/executable/io/interop_summary_to_csv/.config.vsh.yaml
@@ -146,9 +146,9 @@ build_info:
  output: "target/executable/io/interop_summary_to_csv"
  executable: "target/executable/io/interop_summary_to_csv/interop_summary_to_csv"
  viash_version: "0.9.0"
-  git_commit: "d1416b59c493c554210dc608b4e60fcca6ce1665"
+  git_commit: "4d8c825fdf075218611913f59ab92fd85043b499"
  git_remote: "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-15-gd1416b5"
+  git_tag: "v0.1.1-16-g4d8c825"
 package_config:
  name: "demultiplex"
  version: "copycomplete_check"
--- a/target/executable/io/interop_summary_to_csv/interop_summary_to_csv
+++ b/target/executable/io/interop_summary_to_csv/interop_summary_to_csv
@@ -470,9 +470,9 @@ tar -C /tmp/ --no-same-owner --no-same-permissions -xvf /tmp/interop.tar.gz && \
 mv /tmp/interop-1.3.1-Linux-GNU/bin/index-summary /tmp/interop-1.3.1-Linux-GNU/bin/summary /usr/local/bin/

 LABEL org.opencontainers.image.description="Companion container for running component io interop_summary_to_csv"
-LABEL org.opencontainers.image.created="2025-01-10T14:42:21Z"
+LABEL org.opencontainers.image.created="2025-01-10T14:59:08Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="d1416b59c493c554210dc608b4e60fcca6ce1665"
+LABEL org.opencontainers.image.revision="4d8c825fdf075218611913f59ab92fd85043b499"
 LABEL org.opencontainers.image.version="copycomplete_check"

 VIASHDOCKER
--- a/target/executable/io/publish/.config.vsh.yaml
+++ b/target/executable/io/publish/.config.vsh.yaml
@@ -196,9 +196,9 @@ build_info:
  output: "target/executable/io/publish"
  executable: "target/executable/io/publish/publish"
  viash_version: "0.9.0"
-  git_commit: "d1416b59c493c554210dc608b4e60fcca6ce1665"
+  git_commit: "4d8c825fdf075218611913f59ab92fd85043b499"
  git_remote: "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-15-gd1416b5"
+  git_tag: "v0.1.1-16-g4d8c825"
 package_config:
  name: "demultiplex"
  version: "copycomplete_check"
--- a/target/executable/io/publish/publish
+++ b/target/executable/io/publish/publish
@@ -490,9 +490,9 @@ RUN apt-get update && \
  rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.description="Companion container for running component io publish"
-LABEL org.opencontainers.image.created="2025-01-10T14:42:21Z"
+LABEL org.opencontainers.image.created="2025-01-10T14:59:08Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="d1416b59c493c554210dc608b4e60fcca6ce1665"
+LABEL org.opencontainers.image.revision="4d8c825fdf075218611913f59ab92fd85043b499"
 LABEL org.opencontainers.image.version="copycomplete_check"

 VIASHDOCKER
--- a/target/executable/io/untar/.config.vsh.yaml
+++ b/target/executable/io/untar/.config.vsh.yaml
@@ -153,9 +153,9 @@ build_info:
  output: "target/executable/io/untar"
  executable: "target/executable/io/untar/untar"
  viash_version: "0.9.0"
-  git_commit: "d1416b59c493c554210dc608b4e60fcca6ce1665"
+  git_commit: "4d8c825fdf075218611913f59ab92fd85043b499"
  git_remote: "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-15-gd1416b5"
+  git_tag: "v0.1.1-16-g4d8c825"
 package_config:
  name: "demultiplex"
  version: "copycomplete_check"
--- a/target/executable/io/untar/untar
+++ b/target/executable/io/untar/untar
@@ -476,9 +476,9 @@ RUN apt-get update && \
  rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.description="Companion container for running component io untar"
-LABEL org.opencontainers.image.created="2025-01-10T14:42:22Z"
+LABEL org.opencontainers.image.created="2025-01-10T14:59:08Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="d1416b59c493c554210dc608b4e60fcca6ce1665"
+LABEL org.opencontainers.image.revision="4d8c825fdf075218611913f59ab92fd85043b499"
 LABEL org.opencontainers.image.version="copycomplete_check"

 VIASHDOCKER
--- a/target/nextflow/dataflow/combine_samples/.config.vsh.yaml
+++ b/target/nextflow/dataflow/combine_samples/.config.vsh.yaml
@@ -144,9 +144,9 @@ build_info:
  output: "target/nextflow/dataflow/combine_samples"
  executable: "target/nextflow/dataflow/combine_samples/main.nf"
  viash_version: "0.9.0"
-  git_commit: "d1416b59c493c554210dc608b4e60fcca6ce1665"
+  git_commit: "4d8c825fdf075218611913f59ab92fd85043b499"
  git_remote: "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-15-gd1416b5"
+  git_tag: "v0.1.1-16-g4d8c825"
 package_config:
  name: "demultiplex"
  version: "copycomplete_check"
--- a/target/nextflow/dataflow/combine_samples/main.nf
+++ b/target/nextflow/dataflow/combine_samples/main.nf
@@ -2980,9 +2980,9 @@ meta = [
    "engine" : "native|native",
    "output" : "target/nextflow/dataflow/combine_samples",
    "viash_version" : "0.9.0",
-    "git_commit" : "d1416b59c493c554210dc608b4e60fcca6ce1665",
+    "git_commit" : "4d8c825fdf075218611913f59ab92fd85043b499",
    "git_remote" : "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-15-gd1416b5"
+    "git_tag" : "v0.1.1-16-g4d8c825"
  },
  "package_config" : {
    "name" : "demultiplex",
--- a/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml
+++ b/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml
@@ -138,9 +138,9 @@ build_info:
  output: "target/nextflow/dataflow/gather_fastqs_and_validate"
  executable: "target/nextflow/dataflow/gather_fastqs_and_validate/main.nf"
  viash_version: "0.9.0"
-  git_commit: "d1416b59c493c554210dc608b4e60fcca6ce1665"
+  git_commit: "4d8c825fdf075218611913f59ab92fd85043b499"
  git_remote: "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-15-gd1416b5"
+  git_tag: "v0.1.1-16-g4d8c825"
 package_config:
  name: "demultiplex"
  version: "copycomplete_check"
--- a/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf
+++ b/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf
@@ -2973,9 +2973,9 @@ meta = [
    "engine" : "native|native",
    "output" : "target/nextflow/dataflow/gather_fastqs_and_validate",
    "viash_version" : "0.9.0",
-    "git_commit" : "d1416b59c493c554210dc608b4e60fcca6ce1665",
+    "git_commit" : "4d8c825fdf075218611913f59ab92fd85043b499",
    "git_remote" : "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-15-gd1416b5"
+    "git_tag" : "v0.1.1-16-g4d8c825"
  },
  "package_config" : {
    "name" : "demultiplex",
--- a/target/nextflow/demultiplex/.config.vsh.yaml
+++ b/target/nextflow/demultiplex/.config.vsh.yaml
@@ -244,9 +244,9 @@ build_info:
  output: "target/nextflow/demultiplex"
  executable: "target/nextflow/demultiplex/main.nf"
  viash_version: "0.9.0"
-  git_commit: "d1416b59c493c554210dc608b4e60fcca6ce1665"
+  git_commit: "4d8c825fdf075218611913f59ab92fd85043b499"
  git_remote: "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-15-gd1416b5"
+  git_tag: "v0.1.1-16-g4d8c825"
  dependencies:
  - "target/nextflow/io/untar"
  - "target/nextflow/dataflow/gather_fastqs_and_validate"
--- a/target/nextflow/demultiplex/main.nf
+++ b/target/nextflow/demultiplex/main.nf
@@ -3120,9 +3120,9 @@ meta = [
    "engine" : "native|native",
    "output" : "target/nextflow/demultiplex",
    "viash_version" : "0.9.0",
-    "git_commit" : "d1416b59c493c554210dc608b4e60fcca6ce1665",
+    "git_commit" : "4d8c825fdf075218611913f59ab92fd85043b499",
    "git_remote" : "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-15-gd1416b5"
+    "git_tag" : "v0.1.1-16-g4d8c825"
  },
  "package_config" : {
    "name" : "demultiplex",
--- a/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml
+++ b/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml
@@ -146,9 +146,9 @@ build_info:
  output: "target/nextflow/io/interop_summary_to_csv"
  executable: "target/nextflow/io/interop_summary_to_csv/main.nf"
  viash_version: "0.9.0"
-  git_commit: "d1416b59c493c554210dc608b4e60fcca6ce1665"
+  git_commit: "4d8c825fdf075218611913f59ab92fd85043b499"
  git_remote: "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-15-gd1416b5"
+  git_tag: "v0.1.1-16-g4d8c825"
 package_config:
  name: "demultiplex"
  version: "copycomplete_check"
--- a/target/nextflow/io/interop_summary_to_csv/main.nf
+++ b/target/nextflow/io/interop_summary_to_csv/main.nf
@@ -2985,9 +2985,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/io/interop_summary_to_csv",
    "viash_version" : "0.9.0",
-    "git_commit" : "d1416b59c493c554210dc608b4e60fcca6ce1665",
+    "git_commit" : "4d8c825fdf075218611913f59ab92fd85043b499",
    "git_remote" : "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-15-gd1416b5"
+    "git_tag" : "v0.1.1-16-g4d8c825"
  },
  "package_config" : {
    "name" : "demultiplex",
--- a/target/nextflow/io/publish/.config.vsh.yaml
+++ b/target/nextflow/io/publish/.config.vsh.yaml
@@ -196,9 +196,9 @@ build_info:
  output: "target/nextflow/io/publish"
  executable: "target/nextflow/io/publish/main.nf"
  viash_version: "0.9.0"
-  git_commit: "d1416b59c493c554210dc608b4e60fcca6ce1665"
+  git_commit: "4d8c825fdf075218611913f59ab92fd85043b499"
  git_remote: "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-15-gd1416b5"
+  git_tag: "v0.1.1-16-g4d8c825"
 package_config:
  name: "demultiplex"
  version: "copycomplete_check"
--- a/target/nextflow/io/publish/main.nf
+++ b/target/nextflow/io/publish/main.nf
@@ -3044,9 +3044,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/io/publish",
    "viash_version" : "0.9.0",
-    "git_commit" : "d1416b59c493c554210dc608b4e60fcca6ce1665",
+    "git_commit" : "4d8c825fdf075218611913f59ab92fd85043b499",
    "git_remote" : "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-15-gd1416b5"
+    "git_tag" : "v0.1.1-16-g4d8c825"
  },
  "package_config" : {
    "name" : "demultiplex",
--- a/target/nextflow/io/untar/.config.vsh.yaml
+++ b/target/nextflow/io/untar/.config.vsh.yaml
@@ -153,9 +153,9 @@ build_info:
  output: "target/nextflow/io/untar"
  executable: "target/nextflow/io/untar/main.nf"
  viash_version: "0.9.0"
-  git_commit: "d1416b59c493c554210dc608b4e60fcca6ce1665"
+  git_commit: "4d8c825fdf075218611913f59ab92fd85043b499"
  git_remote: "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-15-gd1416b5"
+  git_tag: "v0.1.1-16-g4d8c825"
 package_config:
  name: "demultiplex"
  version: "copycomplete_check"
--- a/target/nextflow/io/untar/main.nf
+++ b/target/nextflow/io/untar/main.nf
@@ -2997,9 +2997,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/io/untar",
    "viash_version" : "0.9.0",
-    "git_commit" : "d1416b59c493c554210dc608b4e60fcca6ce1665",
+    "git_commit" : "4d8c825fdf075218611913f59ab92fd85043b499",
    "git_remote" : "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-15-gd1416b5"
+    "git_tag" : "v0.1.1-16-g4d8c825"
  },
  "package_config" : {
    "name" : "demultiplex",
--- a/target/nextflow/runner/.config.vsh.yaml
+++ b/target/nextflow/runner/.config.vsh.yaml
@@ -184,9 +184,9 @@ build_info:
  output: "target/nextflow/runner"
  executable: "target/nextflow/runner/main.nf"
  viash_version: "0.9.0"
-  git_commit: "d1416b59c493c554210dc608b4e60fcca6ce1665"
+  git_commit: "4d8c825fdf075218611913f59ab92fd85043b499"
  git_remote: "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-15-gd1416b5"
+  git_tag: "v0.1.1-16-g4d8c825"
  dependencies:
  - "target/nextflow/demultiplex"
  - "target/nextflow/io/publish"
--- a/target/nextflow/runner/main.nf
+++ b/target/nextflow/runner/main.nf
@@ -3029,9 +3029,9 @@ meta = [
    "engine" : "native|native",
    "output" : "target/nextflow/runner",
    "viash_version" : "0.9.0",
-    "git_commit" : "d1416b59c493c554210dc608b4e60fcca6ce1665",
+    "git_commit" : "4d8c825fdf075218611913f59ab92fd85043b499",
    "git_remote" : "https://x-access-token:ghs_SaYCQ0uYvqLIVXUBCVNZPcP9pTStxd0Bbljy@github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-15-gd1416b5"
+    "git_tag" : "v0.1.1-16-g4d8c825"
  },
  "package_config" : {
    "name" : "demultiplex",