Build branch main with version main (aca8016)

Build pipeline: viash-hub.demultiplex.main-gl2l5

Source commit: aca8016d74

Source message: Trigger CI
This commit is contained in:
CI
2024-09-17 14:38:40 +00:00
parent ebd9b69856
commit 4f93c90b47
24 changed files with 87 additions and 75 deletions

View File

@@ -1,4 +1,4 @@
# Unreleased
# demultiplex v0.1.1
## Minor updates
@@ -8,6 +8,6 @@
* Renamed `biobase` repository to `biobox` (PR #13 and PR #15).
# v0.1.0
# demultiplex v0.1.0
Initial release

View File

@@ -1,5 +1,5 @@
name: "bcl_convert"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Toni Verbeiren"
roles:
@@ -386,7 +386,7 @@ engines:
id: "docker"
image: "debian:trixie-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -418,11 +418,11 @@ build_info:
output: "target/nextflow/bcl_convert"
executable: "target/nextflow/bcl_convert/main.nf"
viash_version: "0.9.0"
git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
git_remote: "https://github.com/viash-hub/biobox"
git_commit: "7e530218844c373048bc33de58f021b6460642e5"
git_remote: "https://x-access-token:ghs_kiUBq39QrAlnG6IaeAcTcXhllzqpOV4LDB3e@github.com/viash-hub/biobox"
package_config:
name: "biobox"
version: "0.2.0"
version: "v0.2.0"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0"
@@ -432,7 +432,7 @@ package_config:
- ".requirements.commands := ['ps']\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "modules"

View File

@@ -1,4 +1,4 @@
// bcl_convert 0.2.0
// bcl_convert v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2809,7 +2809,7 @@ meta = [
"resources_dir": moduleDir.toRealPath().normalize(),
"config": processConfig(readJsonBlob('''{
"name" : "bcl_convert",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Toni Verbeiren",
@@ -3289,7 +3289,7 @@ meta = [
"id" : "docker",
"image" : "debian:trixie-slim",
"target_registry" : "images.viash-hub.com",
"target_tag" : "0.2.0",
"target_tag" : "v0.2.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3329,12 +3329,12 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/bcl_convert",
"viash_version" : "0.9.0",
"git_commit" : "5526b3e939030daea80595fa98387b469329bbfa",
"git_remote" : "https://github.com/viash-hub/biobox"
"git_commit" : "7e530218844c373048bc33de58f021b6460642e5",
"git_remote" : "https://x-access-token:ghs_kiUBq39QrAlnG6IaeAcTcXhllzqpOV4LDB3e@github.com/viash-hub/biobox"
},
"package_config" : {
"name" : "biobox",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "A collection of bioinformatics tools for working with sequence data.\n",
"viash_version" : "0.9.0",
"source" : "src",
@@ -3343,7 +3343,7 @@ meta = [
".requirements.commands := ['ps']\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",
@@ -3815,7 +3815,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/biobox/bcl_convert",
"tag" : "0.2.0"
"tag" : "v0.2.0"
},
"tag" : "$id"
}'''),

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@@ -2,7 +2,7 @@ manifest {
name = 'bcl_convert'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
description = 'Convert bcl files to fastq files using bcl-convert.\nInformation about upgrading from bcl2fastq via\n[Upgrading from bcl2fastq to BCL Convert](https://emea.support.illumina.com/bulletins/2020/10/upgrading-from-bcl2fastq-to-bcl-convert.html)\nand [BCL Convert Compatible Products](https://support.illumina.com/sequencing/sequencing_software/bcl-convert/compatibility.html)\n'
author = 'Toni Verbeiren, Dorien Roosen'
}

View File

@@ -1,5 +1,5 @@
name: "falco"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Toni Verbeiren"
roles:
@@ -287,7 +287,7 @@ engines:
id: "docker"
image: "debian:trixie-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -317,11 +317,11 @@ build_info:
output: "target/nextflow/falco"
executable: "target/nextflow/falco/main.nf"
viash_version: "0.9.0"
git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
git_remote: "https://github.com/viash-hub/biobox"
git_commit: "7e530218844c373048bc33de58f021b6460642e5"
git_remote: "https://x-access-token:ghs_kiUBq39QrAlnG6IaeAcTcXhllzqpOV4LDB3e@github.com/viash-hub/biobox"
package_config:
name: "biobox"
version: "0.2.0"
version: "v0.2.0"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0"
@@ -331,7 +331,7 @@ package_config:
- ".requirements.commands := ['ps']\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "modules"

View File

@@ -1,4 +1,4 @@
// falco 0.2.0
// falco v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2808,7 +2808,7 @@ meta = [
"resources_dir": moduleDir.toRealPath().normalize(),
"config": processConfig(readJsonBlob('''{
"name" : "falco",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Toni Verbeiren",
@@ -3131,7 +3131,7 @@ meta = [
"id" : "docker",
"image" : "debian:trixie-slim",
"target_registry" : "images.viash-hub.com",
"target_tag" : "0.2.0",
"target_tag" : "v0.2.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3170,12 +3170,12 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/falco",
"viash_version" : "0.9.0",
"git_commit" : "5526b3e939030daea80595fa98387b469329bbfa",
"git_remote" : "https://github.com/viash-hub/biobox"
"git_commit" : "7e530218844c373048bc33de58f021b6460642e5",
"git_remote" : "https://x-access-token:ghs_kiUBq39QrAlnG6IaeAcTcXhllzqpOV4LDB3e@github.com/viash-hub/biobox"
},
"package_config" : {
"name" : "biobox",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "A collection of bioinformatics tools for working with sequence data.\n",
"viash_version" : "0.9.0",
"source" : "src",
@@ -3184,7 +3184,7 @@ meta = [
".requirements.commands := ['ps']\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",
@@ -3630,7 +3630,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/biobox/falco",
"tag" : "0.2.0"
"tag" : "v0.2.0"
},
"tag" : "$id"
}'''),

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@@ -2,7 +2,7 @@ manifest {
name = 'falco'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
description = 'A C++ drop-in replacement of FastQC to assess the quality of sequence read data'
author = 'Toni Verbeiren'
}

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@@ -1,5 +1,5 @@
name: "multiqc"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dorien Roosen"
roles:
@@ -433,7 +433,7 @@ engines:
id: "docker"
image: "quay.io/biocontainers/multiqc:1.21--pyhdfd78af_0"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "docker"
@@ -456,11 +456,11 @@ build_info:
output: "target/nextflow/multiqc"
executable: "target/nextflow/multiqc/main.nf"
viash_version: "0.9.0"
git_commit: "5526b3e939030daea80595fa98387b469329bbfa"
git_remote: "https://github.com/viash-hub/biobox"
git_commit: "7e530218844c373048bc33de58f021b6460642e5"
git_remote: "https://x-access-token:ghs_kiUBq39QrAlnG6IaeAcTcXhllzqpOV4LDB3e@github.com/viash-hub/biobox"
package_config:
name: "biobox"
version: "0.2.0"
version: "v0.2.0"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0"
@@ -470,7 +470,7 @@ package_config:
- ".requirements.commands := ['ps']\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "modules"

View File

@@ -1,4 +1,4 @@
// multiqc 0.2.0
// multiqc v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2808,7 +2808,7 @@ meta = [
"resources_dir": moduleDir.toRealPath().normalize(),
"config": processConfig(readJsonBlob('''{
"name" : "multiqc",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Dorien Roosen",
@@ -3335,7 +3335,7 @@ meta = [
"id" : "docker",
"image" : "quay.io/biocontainers/multiqc:1.21--pyhdfd78af_0",
"target_registry" : "images.viash-hub.com",
"target_tag" : "0.2.0",
"target_tag" : "v0.2.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3366,12 +3366,12 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/multiqc",
"viash_version" : "0.9.0",
"git_commit" : "5526b3e939030daea80595fa98387b469329bbfa",
"git_remote" : "https://github.com/viash-hub/biobox"
"git_commit" : "7e530218844c373048bc33de58f021b6460642e5",
"git_remote" : "https://x-access-token:ghs_kiUBq39QrAlnG6IaeAcTcXhllzqpOV4LDB3e@github.com/viash-hub/biobox"
},
"package_config" : {
"name" : "biobox",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "A collection of bioinformatics tools for working with sequence data.\n",
"viash_version" : "0.9.0",
"source" : "src",
@@ -3380,7 +3380,7 @@ meta = [
".requirements.commands := ['ps']\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",
@@ -3961,7 +3961,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/biobox/multiqc",
"tag" : "0.2.0"
"tag" : "v0.2.0"
},
"tag" : "$id"
}'''),

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@@ -2,7 +2,7 @@ manifest {
name = 'multiqc'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
description = 'MultiQC aggregates results from bioinformatics analyses across many samples into a single report.\nIt searches a given directory for analysis logs and compiles a HTML report. It\'s a general use tool, perfect for summarising the output from numerous bioinformatics tools.\n'
author = 'Dorien Roosen'
}

View File

@@ -141,8 +141,9 @@ build_info:
output: "target/executable/io/interop_summary_to_csv"
executable: "target/executable/io/interop_summary_to_csv/interop_summary_to_csv"
viash_version: "0.9.0"
git_commit: "399e46901d6ce882a7430842b0d74774736439e2"
git_remote: "https://github.com/viash-hub/demultiplex"
git_commit: "aca8016d742c72e4badc2fc91a40b8f7f1290010"
git_remote: "https://x-access-token:ghs_4EbRaqHFsFnFDE5ZJZkaC4L0vWqkDy2imJ6y@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-1-gaca8016"
package_config:
name: "demultiplex"
version: "main"

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@@ -470,9 +470,9 @@ tar -C /tmp/ --no-same-owner --no-same-permissions -xvf /tmp/interop.tar.gz && \
mv /tmp/interop-1.3.1-Linux-GNU/bin/index-summary /tmp/interop-1.3.1-Linux-GNU/bin/summary /usr/local/bin/
LABEL org.opencontainers.image.description="Companion container for running component io interop_summary_to_csv"
LABEL org.opencontainers.image.created="2024-09-13T09:38:22Z"
LABEL org.opencontainers.image.created="2024-09-17T14:26:21Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
LABEL org.opencontainers.image.revision="399e46901d6ce882a7430842b0d74774736439e2"
LABEL org.opencontainers.image.revision="aca8016d742c72e4badc2fc91a40b8f7f1290010"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

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@@ -148,8 +148,9 @@ build_info:
output: "target/executable/io/untar"
executable: "target/executable/io/untar/untar"
viash_version: "0.9.0"
git_commit: "399e46901d6ce882a7430842b0d74774736439e2"
git_remote: "https://github.com/viash-hub/demultiplex"
git_commit: "aca8016d742c72e4badc2fc91a40b8f7f1290010"
git_remote: "https://x-access-token:ghs_4EbRaqHFsFnFDE5ZJZkaC4L0vWqkDy2imJ6y@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-1-gaca8016"
package_config:
name: "demultiplex"
version: "main"

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@@ -476,9 +476,9 @@ RUN apt-get update && \
rm -rf /var/lib/apt/lists/*
LABEL org.opencontainers.image.description="Companion container for running component io untar"
LABEL org.opencontainers.image.created="2024-09-13T09:38:22Z"
LABEL org.opencontainers.image.created="2024-09-17T14:26:21Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
LABEL org.opencontainers.image.revision="399e46901d6ce882a7430842b0d74774736439e2"
LABEL org.opencontainers.image.revision="aca8016d742c72e4badc2fc91a40b8f7f1290010"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

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@@ -139,8 +139,9 @@ build_info:
output: "target/nextflow/dataflow/combine_samples"
executable: "target/nextflow/dataflow/combine_samples/main.nf"
viash_version: "0.9.0"
git_commit: "399e46901d6ce882a7430842b0d74774736439e2"
git_remote: "https://github.com/viash-hub/demultiplex"
git_commit: "aca8016d742c72e4badc2fc91a40b8f7f1290010"
git_remote: "https://x-access-token:ghs_4EbRaqHFsFnFDE5ZJZkaC4L0vWqkDy2imJ6y@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-1-gaca8016"
package_config:
name: "demultiplex"
version: "main"

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@@ -2972,8 +2972,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/dataflow/combine_samples",
"viash_version" : "0.9.0",
"git_commit" : "399e46901d6ce882a7430842b0d74774736439e2",
"git_remote" : "https://github.com/viash-hub/demultiplex"
"git_commit" : "aca8016d742c72e4badc2fc91a40b8f7f1290010",
"git_remote" : "https://x-access-token:ghs_4EbRaqHFsFnFDE5ZJZkaC4L0vWqkDy2imJ6y@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-1-gaca8016"
},
"package_config" : {
"name" : "demultiplex",

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@@ -133,8 +133,9 @@ build_info:
output: "target/nextflow/dataflow/gather_fastqs_and_validate"
executable: "target/nextflow/dataflow/gather_fastqs_and_validate/main.nf"
viash_version: "0.9.0"
git_commit: "399e46901d6ce882a7430842b0d74774736439e2"
git_remote: "https://github.com/viash-hub/demultiplex"
git_commit: "aca8016d742c72e4badc2fc91a40b8f7f1290010"
git_remote: "https://x-access-token:ghs_4EbRaqHFsFnFDE5ZJZkaC4L0vWqkDy2imJ6y@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-1-gaca8016"
package_config:
name: "demultiplex"
version: "main"

View File

@@ -2965,8 +2965,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/dataflow/gather_fastqs_and_validate",
"viash_version" : "0.9.0",
"git_commit" : "399e46901d6ce882a7430842b0d74774736439e2",
"git_remote" : "https://github.com/viash-hub/demultiplex"
"git_commit" : "aca8016d742c72e4badc2fc91a40b8f7f1290010",
"git_remote" : "https://x-access-token:ghs_4EbRaqHFsFnFDE5ZJZkaC4L0vWqkDy2imJ6y@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-1-gaca8016"
},
"package_config" : {
"name" : "demultiplex",

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@@ -186,8 +186,9 @@ build_info:
output: "target/nextflow/demultiplex"
executable: "target/nextflow/demultiplex/main.nf"
viash_version: "0.9.0"
git_commit: "399e46901d6ce882a7430842b0d74774736439e2"
git_remote: "https://github.com/viash-hub/demultiplex"
git_commit: "aca8016d742c72e4badc2fc91a40b8f7f1290010"
git_remote: "https://x-access-token:ghs_4EbRaqHFsFnFDE5ZJZkaC4L0vWqkDy2imJ6y@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-1-gaca8016"
dependencies:
- "target/nextflow/io/untar"
- "target/nextflow/dataflow/gather_fastqs_and_validate"

View File

@@ -3049,8 +3049,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/demultiplex",
"viash_version" : "0.9.0",
"git_commit" : "399e46901d6ce882a7430842b0d74774736439e2",
"git_remote" : "https://github.com/viash-hub/demultiplex"
"git_commit" : "aca8016d742c72e4badc2fc91a40b8f7f1290010",
"git_remote" : "https://x-access-token:ghs_4EbRaqHFsFnFDE5ZJZkaC4L0vWqkDy2imJ6y@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-1-gaca8016"
},
"package_config" : {
"name" : "demultiplex",

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@@ -141,8 +141,9 @@ build_info:
output: "target/nextflow/io/interop_summary_to_csv"
executable: "target/nextflow/io/interop_summary_to_csv/main.nf"
viash_version: "0.9.0"
git_commit: "399e46901d6ce882a7430842b0d74774736439e2"
git_remote: "https://github.com/viash-hub/demultiplex"
git_commit: "aca8016d742c72e4badc2fc91a40b8f7f1290010"
git_remote: "https://x-access-token:ghs_4EbRaqHFsFnFDE5ZJZkaC4L0vWqkDy2imJ6y@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-1-gaca8016"
package_config:
name: "demultiplex"
version: "main"

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@@ -2977,8 +2977,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/io/interop_summary_to_csv",
"viash_version" : "0.9.0",
"git_commit" : "399e46901d6ce882a7430842b0d74774736439e2",
"git_remote" : "https://github.com/viash-hub/demultiplex"
"git_commit" : "aca8016d742c72e4badc2fc91a40b8f7f1290010",
"git_remote" : "https://x-access-token:ghs_4EbRaqHFsFnFDE5ZJZkaC4L0vWqkDy2imJ6y@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-1-gaca8016"
},
"package_config" : {
"name" : "demultiplex",

View File

@@ -148,8 +148,9 @@ build_info:
output: "target/nextflow/io/untar"
executable: "target/nextflow/io/untar/main.nf"
viash_version: "0.9.0"
git_commit: "399e46901d6ce882a7430842b0d74774736439e2"
git_remote: "https://github.com/viash-hub/demultiplex"
git_commit: "aca8016d742c72e4badc2fc91a40b8f7f1290010"
git_remote: "https://x-access-token:ghs_4EbRaqHFsFnFDE5ZJZkaC4L0vWqkDy2imJ6y@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-1-gaca8016"
package_config:
name: "demultiplex"
version: "main"

View File

@@ -2989,8 +2989,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/io/untar",
"viash_version" : "0.9.0",
"git_commit" : "399e46901d6ce882a7430842b0d74774736439e2",
"git_remote" : "https://github.com/viash-hub/demultiplex"
"git_commit" : "aca8016d742c72e4badc2fc91a40b8f7f1290010",
"git_remote" : "https://x-access-token:ghs_4EbRaqHFsFnFDE5ZJZkaC4L0vWqkDy2imJ6y@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-1-gaca8016"
},
"package_config" : {
"name" : "demultiplex",