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Build branch v0.2 with version v0.2.0 (5a42daa)

Browse Source 
Build pipeline: viash-hub.htrnaseq.v0.2-4j59d

Source commit: 5a42daa1b5

Source message: Change version from 2.0.0 to v2.0.0
This commit is contained in:
CI
2024-12-18 11:59:17 +00:00
parent 297bb04bca
commit 13ef1ccb6c
59 changed files with 302 additions and 302 deletions
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2
_viash.yaml
View File

@@ -1,5 +1,5 @@
name: htrnaseq
version: 0.2.0
version: v0.2.0
description: |
High-throughput pipeline [WIP]
license: MIT

2
nextflow.config
View File

@@ -1,6 +1,6 @@
manifest {
name = "htrnaseq"
version = "0.2.0"
version = "v0.2.0"
defaultBranch = "main"
nextflowVersion = "!>=20.12.1-edge"
}

12
target/executable/eset/create_eset/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "create_eset"
namespace: "eset"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -172,7 +172,7 @@ engines:
id: "docker"
image: "r-base:4.3.0"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -220,11 +220,11 @@ build_info:
output: "target/executable/eset/create_eset"
executable: "target/executable/eset/create_eset/create_eset"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -239,7 +239,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

14
target/executable/eset/create_eset/create_eset
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# create_eset 0.2.0
# create_eset v0.2.0
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "create_eset 0.2.0"
echo "create_eset v0.2.0"
echo ""
echo "Arguments:"
echo " --pDataFile"
@@ -488,10 +488,10 @@ remotes::install_url("https://cran.r-project.org/src/contrib/Archive/Seurat/Seur
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_eset"
LABEL org.opencontainers.image.created="2024-12-18T07:22:15Z"
LABEL org.opencontainers.image.created="2024-12-18T10:19:51Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="21e5572b2c0a77fb384424bdcb31b5d282204cce"
LABEL org.opencontainers.image.version="0.2.0"
LABEL org.opencontainers.image.revision="5a42daa1b5457daf455abc9b7820eff80ae27133"
LABEL org.opencontainers.image.version="v0.2.0"
VIASHDOCKER
fi
@@ -627,7 +627,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "create_eset 0.2.0"
echo "create_eset v0.2.0"
exit
;;
--pDataFile)
@@ -779,7 +779,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_eset:0.2.0'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_eset:v0.2.0'
fi
# print dockerfile

12
target/executable/eset/create_fdata/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "create_fdata"
namespace: "eset"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -148,7 +148,7 @@ engines:
id: "docker"
image: "python:3.12-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -177,11 +177,11 @@ build_info:
output: "target/executable/eset/create_fdata"
executable: "target/executable/eset/create_fdata/create_fdata"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -196,7 +196,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

14
target/executable/eset/create_fdata/create_fdata
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# create_fdata 0.2.0
# create_fdata v0.2.0
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "create_fdata 0.2.0"
echo "create_fdata v0.2.0"
echo ""
echo "Create a fdata file"
echo ""
@@ -478,10 +478,10 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_fdata"
LABEL org.opencontainers.image.created="2024-12-18T07:22:16Z"
LABEL org.opencontainers.image.created="2024-12-18T10:19:53Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="21e5572b2c0a77fb384424bdcb31b5d282204cce"
LABEL org.opencontainers.image.version="0.2.0"
LABEL org.opencontainers.image.revision="5a42daa1b5457daf455abc9b7820eff80ae27133"
LABEL org.opencontainers.image.version="v0.2.0"
VIASHDOCKER
fi
@@ -617,7 +617,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "create_fdata 0.2.0"
echo "create_fdata v0.2.0"
exit
;;
--gtf)
@@ -730,7 +730,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_fdata:0.2.0'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_fdata:v0.2.0'
fi
# print dockerfile

12
target/executable/eset/create_pdata/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "create_pdata"
namespace: "eset"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -162,7 +162,7 @@ engines:
id: "docker"
image: "python:3.12-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -191,11 +191,11 @@ build_info:
output: "target/executable/eset/create_pdata"
executable: "target/executable/eset/create_pdata/create_pdata"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -210,7 +210,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

14
target/executable/eset/create_pdata/create_pdata
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# create_pdata 0.2.0
# create_pdata v0.2.0
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "create_pdata 0.2.0"
echo "create_pdata v0.2.0"
echo ""
echo "Create a pdata file by combining the mapping statistics"
echo ""
@@ -488,10 +488,10 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_pdata"
LABEL org.opencontainers.image.created="2024-12-18T07:22:14Z"
LABEL org.opencontainers.image.created="2024-12-18T10:19:51Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="21e5572b2c0a77fb384424bdcb31b5d282204cce"
LABEL org.opencontainers.image.version="0.2.0"
LABEL org.opencontainers.image.revision="5a42daa1b5457daf455abc9b7820eff80ae27133"
LABEL org.opencontainers.image.version="v0.2.0"
VIASHDOCKER
fi
@@ -627,7 +627,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "create_pdata 0.2.0"
echo "create_pdata v0.2.0"
exit
;;
--star_stats_file)
@@ -751,7 +751,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_pdata:0.2.0'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_pdata:v0.2.0'
fi
# print dockerfile

12
target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "check_eset"
namespace: "integration_test_components/htrnaseq"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -128,7 +128,7 @@ engines:
id: "docker"
image: "bioconductor/bioconductor_docker:3.19"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "r"
@@ -148,11 +148,11 @@ build_info:
output: "target/executable/integration_test_components/htrnaseq/check_eset"
executable: "target/executable/integration_test_components/htrnaseq/check_eset/check_eset"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -167,7 +167,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

14
target/executable/integration_test_components/htrnaseq/check_eset/check_eset
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# check_eset 0.2.0
# check_eset v0.2.0
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "check_eset 0.2.0"
echo "check_eset v0.2.0"
echo ""
echo "This component test the ExpressionSet object as output by the main pipeline."
echo ""
@@ -470,10 +470,10 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/htrnaseq check_eset"
LABEL org.opencontainers.image.created="2024-12-18T07:22:16Z"
LABEL org.opencontainers.image.created="2024-12-18T10:19:53Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="21e5572b2c0a77fb384424bdcb31b5d282204cce"
LABEL org.opencontainers.image.version="0.2.0"
LABEL org.opencontainers.image.revision="5a42daa1b5457daf455abc9b7820eff80ae27133"
LABEL org.opencontainers.image.version="v0.2.0"
VIASHDOCKER
fi
@@ -609,7 +609,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "check_eset 0.2.0"
echo "check_eset v0.2.0"
exit
;;
--eset)
@@ -728,7 +728,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/integration_test_components/htrnaseq/check_eset:0.2.0'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/integration_test_components/htrnaseq/check_eset:v0.2.0'
fi
# print dockerfile

12
target/executable/parallel_map/.config.vsh.yaml
View File

@@ -1,5 +1,5 @@
name: "parallel_map"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -228,7 +228,7 @@ engines:
id: "docker"
image: "debian:stable-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -264,11 +264,11 @@ build_info:
output: "target/executable/parallel_map"
executable: "target/executable/parallel_map/parallel_map"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -283,7 +283,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

14
target/executable/parallel_map/parallel_map
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# parallel_map 0.2.0
# parallel_map v0.2.0
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "parallel_map 0.2.0"
echo "parallel_map v0.2.0"
echo ""
echo "Map wells in batch, using STAR"
echo "Spliced Transcripts Alignment to a Reference (C) Alexander Dobin"
@@ -517,10 +517,10 @@ ENV STAR_BINARY=STAR
COPY STAR /usr/local/bin/$STAR_BINARY
LABEL org.opencontainers.image.authors="Dries Schaumont, Toni Verbeiren"
LABEL org.opencontainers.image.description="Companion container for running component parallel_map"
LABEL org.opencontainers.image.created="2024-12-18T07:22:15Z"
LABEL org.opencontainers.image.created="2024-12-18T10:19:52Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="21e5572b2c0a77fb384424bdcb31b5d282204cce"
LABEL org.opencontainers.image.version="0.2.0"
LABEL org.opencontainers.image.revision="5a42daa1b5457daf455abc9b7820eff80ae27133"
LABEL org.opencontainers.image.version="v0.2.0"
VIASHDOCKER
fi
@@ -656,7 +656,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "parallel_map 0.2.0"
echo "parallel_map v0.2.0"
exit
;;
--input_r1)
@@ -875,7 +875,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/parallel_map:0.2.0'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/parallel_map:v0.2.0'
fi
# print dockerfile

12
target/executable/report/create_report/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "create_report"
namespace: "report"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -153,7 +153,7 @@ engines:
id: "docker"
image: "rocker/r2u:24.04"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -201,11 +201,11 @@ build_info:
output: "target/executable/report/create_report"
executable: "target/executable/report/create_report/create_report"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -220,7 +220,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

14
target/executable/report/create_report/create_report
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# create_report 0.2.0
# create_report v0.2.0
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "create_report 0.2.0"
echo "create_report v0.2.0"
echo ""
echo "Create a basic QC report in HTML format based on a number of esets."
echo ""
@@ -476,10 +476,10 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component report create_report"
LABEL org.opencontainers.image.created="2024-12-18T07:22:16Z"
LABEL org.opencontainers.image.created="2024-12-18T10:19:52Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="21e5572b2c0a77fb384424bdcb31b5d282204cce"
LABEL org.opencontainers.image.version="0.2.0"
LABEL org.opencontainers.image.revision="5a42daa1b5457daf455abc9b7820eff80ae27133"
LABEL org.opencontainers.image.version="v0.2.0"
VIASHDOCKER
fi
@@ -615,7 +615,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "create_report 0.2.0"
echo "create_report v0.2.0"
exit
;;
--eset)
@@ -734,7 +734,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/report/create_report:0.2.0'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/report/create_report:v0.2.0'
fi
# print dockerfile

12
target/executable/stats/combine_star_logs/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "combine_star_logs"
namespace: "stats"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -169,7 +169,7 @@ engines:
id: "docker"
image: "python:3.12-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -198,11 +198,11 @@ build_info:
output: "target/executable/stats/combine_star_logs"
executable: "target/executable/stats/combine_star_logs/combine_star_logs"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -217,7 +217,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

14
target/executable/stats/combine_star_logs/combine_star_logs
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# combine_star_logs 0.2.0
# combine_star_logs v0.2.0
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "combine_star_logs 0.2.0"
echo "combine_star_logs v0.2.0"
echo ""
echo "Arguments:"
echo " --barcodes"
@@ -490,10 +490,10 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component stats combine_star_logs"
LABEL org.opencontainers.image.created="2024-12-18T07:22:15Z"
LABEL org.opencontainers.image.created="2024-12-18T10:19:51Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="21e5572b2c0a77fb384424bdcb31b5d282204cce"
LABEL org.opencontainers.image.version="0.2.0"
LABEL org.opencontainers.image.revision="5a42daa1b5457daf455abc9b7820eff80ae27133"
LABEL org.opencontainers.image.version="v0.2.0"
VIASHDOCKER
fi
@@ -629,7 +629,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "combine_star_logs 0.2.0"
echo "combine_star_logs v0.2.0"
exit
;;
--barcodes)
@@ -799,7 +799,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/combine_star_logs:0.2.0'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/combine_star_logs:v0.2.0'
fi
# print dockerfile

12
target/executable/stats/generate_pool_statistics/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "generate_pool_statistics"
namespace: "stats"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -153,7 +153,7 @@ engines:
id: "docker"
image: "python:3.12-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -182,11 +182,11 @@ build_info:
output: "target/executable/stats/generate_pool_statistics"
executable: "target/executable/stats/generate_pool_statistics/generate_pool_statistics"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -201,7 +201,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

14
target/executable/stats/generate_pool_statistics/generate_pool_statistics
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# generate_pool_statistics 0.2.0
# generate_pool_statistics v0.2.0
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "generate_pool_statistics 0.2.0"
echo "generate_pool_statistics v0.2.0"
echo ""
echo "Arguments:"
echo " --nrReadsNrGenesPerChrom"
@@ -483,10 +483,10 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component stats generate_pool_statistics"
LABEL org.opencontainers.image.created="2024-12-18T07:22:14Z"
LABEL org.opencontainers.image.created="2024-12-18T10:19:51Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="21e5572b2c0a77fb384424bdcb31b5d282204cce"
LABEL org.opencontainers.image.version="0.2.0"
LABEL org.opencontainers.image.revision="5a42daa1b5457daf455abc9b7820eff80ae27133"
LABEL org.opencontainers.image.version="v0.2.0"
VIASHDOCKER
fi
@@ -622,7 +622,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "generate_pool_statistics 0.2.0"
echo "generate_pool_statistics v0.2.0"
exit
;;
--nrReadsNrGenesPerChrom)
@@ -741,7 +741,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/generate_pool_statistics:0.2.0'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/generate_pool_statistics:v0.2.0'
fi
# print dockerfile

12
target/executable/stats/generate_well_statistics/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "generate_well_statistics"
namespace: "stats"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -222,7 +222,7 @@ engines:
id: "docker"
image: "debian:stable-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "docker"
@@ -262,11 +262,11 @@ build_info:
output: "target/executable/stats/generate_well_statistics"
executable: "target/executable/stats/generate_well_statistics/generate_well_statistics"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -281,7 +281,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

14
target/executable/stats/generate_well_statistics/generate_well_statistics
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# generate_well_statistics 0.2.0
# generate_well_statistics v0.2.0
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "generate_well_statistics 0.2.0"
echo "generate_well_statistics v0.2.0"
echo ""
echo "Generate summary statistics from BAM files generated by STAR solo."
echo ""
@@ -520,10 +520,10 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component stats generate_well_statistics"
LABEL org.opencontainers.image.created="2024-12-18T07:22:15Z"
LABEL org.opencontainers.image.created="2024-12-18T10:19:52Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="21e5572b2c0a77fb384424bdcb31b5d282204cce"
LABEL org.opencontainers.image.version="0.2.0"
LABEL org.opencontainers.image.revision="5a42daa1b5457daf455abc9b7820eff80ae27133"
LABEL org.opencontainers.image.version="v0.2.0"
VIASHDOCKER
fi
@@ -659,7 +659,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "generate_well_statistics 0.2.0"
echo "generate_well_statistics v0.2.0"
exit
;;
--input)
@@ -838,7 +838,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/generate_well_statistics:0.2.0'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/generate_well_statistics:v0.2.0'
fi
# print dockerfile

12
target/nextflow/eset/create_eset/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "create_eset"
namespace: "eset"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -172,7 +172,7 @@ engines:
id: "docker"
image: "r-base:4.3.0"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -220,11 +220,11 @@ build_info:
output: "target/nextflow/eset/create_eset"
executable: "target/nextflow/eset/create_eset/main.nf"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -239,7 +239,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

16
target/nextflow/eset/create_eset/main.nf
View File

@@ -1,4 +1,4 @@
// create_eset 0.2.0
// create_eset v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2810,7 +2810,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "create_eset",
"namespace" : "eset",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Dries Schaumont",
@@ -3036,7 +3036,7 @@ meta = [
"id" : "docker",
"image" : "r-base:4.3.0",
"target_registry" : "images.viash-hub.com",
"target_tag" : "0.2.0",
"target_tag" : "v0.2.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3090,12 +3090,12 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/eset/create_eset",
"viash_version" : "0.9.0",
"git_commit" : "21e5572b2c0a77fb384424bdcb31b5d282204cce",
"git_remote" : "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
"git_commit" : "5a42daa1b5457daf455abc9b7820eff80ae27133",
"git_remote" : "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "High-throughput pipeline [WIP]\n",
"info" : {
"test_resources" : [
@@ -3112,7 +3112,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",
@@ -3965,7 +3965,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/htrnaseq/eset/create_eset",
"tag" : "0.2.0"
"tag" : "v0.2.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/eset/create_eset/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'eset/create_eset'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
author = 'Dries Schaumont, Marijke Van Moerbeke'
}

12
target/nextflow/eset/create_fdata/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "create_fdata"
namespace: "eset"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -148,7 +148,7 @@ engines:
id: "docker"
image: "python:3.12-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -177,11 +177,11 @@ build_info:
output: "target/nextflow/eset/create_fdata"
executable: "target/nextflow/eset/create_fdata/main.nf"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -196,7 +196,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

16
target/nextflow/eset/create_fdata/main.nf
View File

@@ -1,4 +1,4 @@
// create_fdata 0.2.0
// create_fdata v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2810,7 +2810,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "create_fdata",
"namespace" : "eset",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Dries Schaumont",
@@ -3003,7 +3003,7 @@ meta = [
"id" : "docker",
"image" : "python:3.12-slim",
"target_registry" : "images.viash-hub.com",
"target_tag" : "0.2.0",
"target_tag" : "v0.2.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3044,12 +3044,12 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/eset/create_fdata",
"viash_version" : "0.9.0",
"git_commit" : "21e5572b2c0a77fb384424bdcb31b5d282204cce",
"git_remote" : "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
"git_commit" : "5a42daa1b5457daf455abc9b7820eff80ae27133",
"git_remote" : "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "High-throughput pipeline [WIP]\n",
"info" : {
"test_resources" : [
@@ -3066,7 +3066,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",
@@ -3606,7 +3606,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/htrnaseq/eset/create_fdata",
"tag" : "0.2.0"
"tag" : "v0.2.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/eset/create_fdata/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'eset/create_fdata'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
description = 'Create a fdata file\n'
author = 'Dries Schaumont, Marijke Van Moerbeke'
}

12
target/nextflow/eset/create_pdata/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "create_pdata"
namespace: "eset"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -162,7 +162,7 @@ engines:
id: "docker"
image: "python:3.12-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -191,11 +191,11 @@ build_info:
output: "target/nextflow/eset/create_pdata"
executable: "target/nextflow/eset/create_pdata/main.nf"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -210,7 +210,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

16
target/nextflow/eset/create_pdata/main.nf
View File

@@ -1,4 +1,4 @@
// create_pdata 0.2.0
// create_pdata v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2810,7 +2810,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "create_pdata",
"namespace" : "eset",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Dries Schaumont",
@@ -3017,7 +3017,7 @@ meta = [
"id" : "docker",
"image" : "python:3.12-slim",
"target_registry" : "images.viash-hub.com",
"target_tag" : "0.2.0",
"target_tag" : "v0.2.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3058,12 +3058,12 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/eset/create_pdata",
"viash_version" : "0.9.0",
"git_commit" : "21e5572b2c0a77fb384424bdcb31b5d282204cce",
"git_remote" : "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
"git_commit" : "5a42daa1b5457daf455abc9b7820eff80ae27133",
"git_remote" : "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "High-throughput pipeline [WIP]\n",
"info" : {
"test_resources" : [
@@ -3080,7 +3080,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",
@@ -3550,7 +3550,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/htrnaseq/eset/create_pdata",
"tag" : "0.2.0"
"tag" : "v0.2.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/eset/create_pdata/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'eset/create_pdata'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
description = 'Create a pdata file by combining the mapping statistics \n'
author = 'Dries Schaumont, Marijke Van Moerbeke'
}

12
target/nextflow/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "check_eset"
namespace: "integration_test_components/htrnaseq"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -128,7 +128,7 @@ engines:
id: "docker"
image: "bioconductor/bioconductor_docker:3.19"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "r"
@@ -148,11 +148,11 @@ build_info:
output: "target/nextflow/integration_test_components/htrnaseq/check_eset"
executable: "target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -167,7 +167,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

16
target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf
View File

@@ -1,4 +1,4 @@
// check_eset 0.2.0
// check_eset v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2809,7 +2809,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "check_eset",
"namespace" : "integration_test_components/htrnaseq",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Dries Schaumont",
@@ -2971,7 +2971,7 @@ meta = [
"id" : "docker",
"image" : "bioconductor/bioconductor_docker:3.19",
"target_registry" : "images.viash-hub.com",
"target_tag" : "0.2.0",
"target_tag" : "v0.2.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -2997,12 +2997,12 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/integration_test_components/htrnaseq/check_eset",
"viash_version" : "0.9.0",
"git_commit" : "21e5572b2c0a77fb384424bdcb31b5d282204cce",
"git_remote" : "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
"git_commit" : "5a42daa1b5457daf455abc9b7820eff80ae27133",
"git_remote" : "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "High-throughput pipeline [WIP]\n",
"info" : {
"test_resources" : [
@@ -3019,7 +3019,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",
@@ -3646,7 +3646,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/htrnaseq/integration_test_components/htrnaseq/check_eset",
"tag" : "0.2.0"
"tag" : "v0.2.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/integration_test_components/htrnaseq/check_eset/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'integration_test_components/htrnaseq/check_eset'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
description = 'This component test the ExpressionSet object as output by the main pipeline.'
author = 'Dries Schaumont'
}

12
target/nextflow/parallel_map/.config.vsh.yaml
View File

@@ -1,5 +1,5 @@
name: "parallel_map"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -228,7 +228,7 @@ engines:
id: "docker"
image: "debian:stable-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -264,11 +264,11 @@ build_info:
output: "target/nextflow/parallel_map"
executable: "target/nextflow/parallel_map/main.nf"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -283,7 +283,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

16
target/nextflow/parallel_map/main.nf
View File

@@ -1,4 +1,4 @@
// parallel_map 0.2.0
// parallel_map v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2809,7 +2809,7 @@ meta = [
"resources_dir": moduleDir.toRealPath().normalize(),
"config": processConfig(readJsonBlob('''{
"name" : "parallel_map",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Dries Schaumont",
@@ -3102,7 +3102,7 @@ meta = [
"id" : "docker",
"image" : "debian:stable-slim",
"target_registry" : "images.viash-hub.com",
"target_tag" : "0.2.0",
"target_tag" : "v0.2.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3148,12 +3148,12 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/parallel_map",
"viash_version" : "0.9.0",
"git_commit" : "21e5572b2c0a77fb384424bdcb31b5d282204cce",
"git_remote" : "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
"git_commit" : "5a42daa1b5457daf455abc9b7820eff80ae27133",
"git_remote" : "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "High-throughput pipeline [WIP]\n",
"info" : {
"test_resources" : [
@@ -3170,7 +3170,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",
@@ -3866,7 +3866,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/htrnaseq/parallel_map",
"tag" : "0.2.0"
"tag" : "v0.2.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/parallel_map/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'parallel_map'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
description = 'Map wells in batch, using STAR\nSpliced Transcripts Alignment to a Reference (C) Alexander Dobin\nhttps://github.com/alexdobin/STAR\n'
author = 'Dries Schaumont, Toni Verbeiren'
}

12
target/nextflow/report/create_report/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "create_report"
namespace: "report"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -153,7 +153,7 @@ engines:
id: "docker"
image: "rocker/r2u:24.04"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -201,11 +201,11 @@ build_info:
output: "target/nextflow/report/create_report"
executable: "target/nextflow/report/create_report/main.nf"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -220,7 +220,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

16
target/nextflow/report/create_report/main.nf
View File

@@ -1,4 +1,4 @@
// create_report 0.2.0
// create_report v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2810,7 +2810,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "create_report",
"namespace" : "report",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Dries Schaumont",
@@ -3016,7 +3016,7 @@ meta = [
"id" : "docker",
"image" : "rocker/r2u:24.04",
"target_registry" : "images.viash-hub.com",
"target_tag" : "0.2.0",
"target_tag" : "v0.2.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3077,12 +3077,12 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/report/create_report",
"viash_version" : "0.9.0",
"git_commit" : "21e5572b2c0a77fb384424bdcb31b5d282204cce",
"git_remote" : "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
"git_commit" : "5a42daa1b5457daf455abc9b7820eff80ae27133",
"git_remote" : "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "High-throughput pipeline [WIP]\n",
"info" : {
"test_resources" : [
@@ -3099,7 +3099,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",
@@ -3561,7 +3561,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/htrnaseq/report/create_report",
"tag" : "0.2.0"
"tag" : "v0.2.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/report/create_report/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'report/create_report'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
description = 'Create a basic QC report in HTML format based on a number of esets.\n'
author = 'Dries Schaumont, Marijke Van Moerbeke'
}

12
target/nextflow/stats/combine_star_logs/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "combine_star_logs"
namespace: "stats"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -169,7 +169,7 @@ engines:
id: "docker"
image: "python:3.12-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -198,11 +198,11 @@ build_info:
output: "target/nextflow/stats/combine_star_logs"
executable: "target/nextflow/stats/combine_star_logs/main.nf"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -217,7 +217,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

16
target/nextflow/stats/combine_star_logs/main.nf
View File

@@ -1,4 +1,4 @@
// combine_star_logs 0.2.0
// combine_star_logs v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2809,7 +2809,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "combine_star_logs",
"namespace" : "stats",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Dries Schaumont",
@@ -3019,7 +3019,7 @@ meta = [
"id" : "docker",
"image" : "python:3.12-slim",
"target_registry" : "images.viash-hub.com",
"target_tag" : "0.2.0",
"target_tag" : "v0.2.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3060,12 +3060,12 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/stats/combine_star_logs",
"viash_version" : "0.9.0",
"git_commit" : "21e5572b2c0a77fb384424bdcb31b5d282204cce",
"git_remote" : "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
"git_commit" : "5a42daa1b5457daf455abc9b7820eff80ae27133",
"git_remote" : "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "High-throughput pipeline [WIP]\n",
"info" : {
"test_resources" : [
@@ -3082,7 +3082,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",
@@ -3718,7 +3718,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/htrnaseq/stats/combine_star_logs",
"tag" : "0.2.0"
"tag" : "v0.2.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/stats/combine_star_logs/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'stats/combine_star_logs'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
author = 'Dries Schaumont'
}

12
target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "generate_pool_statistics"
namespace: "stats"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -153,7 +153,7 @@ engines:
id: "docker"
image: "python:3.12-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -182,11 +182,11 @@ build_info:
output: "target/nextflow/stats/generate_pool_statistics"
executable: "target/nextflow/stats/generate_pool_statistics/main.nf"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -201,7 +201,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

16
target/nextflow/stats/generate_pool_statistics/main.nf
View File

@@ -1,4 +1,4 @@
// generate_pool_statistics 0.2.0
// generate_pool_statistics v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2810,7 +2810,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "generate_pool_statistics",
"namespace" : "stats",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Dries Schaumont",
@@ -3003,7 +3003,7 @@ meta = [
"id" : "docker",
"image" : "python:3.12-slim",
"target_registry" : "images.viash-hub.com",
"target_tag" : "0.2.0",
"target_tag" : "v0.2.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3044,12 +3044,12 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/stats/generate_pool_statistics",
"viash_version" : "0.9.0",
"git_commit" : "21e5572b2c0a77fb384424bdcb31b5d282204cce",
"git_remote" : "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
"git_commit" : "5a42daa1b5457daf455abc9b7820eff80ae27133",
"git_remote" : "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "High-throughput pipeline [WIP]\n",
"info" : {
"test_resources" : [
@@ -3066,7 +3066,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",
@@ -3567,7 +3567,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/htrnaseq/stats/generate_pool_statistics",
"tag" : "0.2.0"
"tag" : "v0.2.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/stats/generate_pool_statistics/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'stats/generate_pool_statistics'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
author = 'Dries Schaumont, Marijke Van Moerbeke'
}

12
target/nextflow/stats/generate_well_statistics/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "generate_well_statistics"
namespace: "stats"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -222,7 +222,7 @@ engines:
id: "docker"
image: "debian:stable-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "docker"
@@ -262,11 +262,11 @@ build_info:
output: "target/nextflow/stats/generate_well_statistics"
executable: "target/nextflow/stats/generate_well_statistics/main.nf"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -281,7 +281,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

16
target/nextflow/stats/generate_well_statistics/main.nf
View File

@@ -1,4 +1,4 @@
// generate_well_statistics 0.2.0
// generate_well_statistics v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2810,7 +2810,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "generate_well_statistics",
"namespace" : "stats",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Dries Schaumont",
@@ -3080,7 +3080,7 @@ meta = [
"id" : "docker",
"image" : "debian:stable-slim",
"target_registry" : "images.viash-hub.com",
"target_tag" : "0.2.0",
"target_tag" : "v0.2.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3135,12 +3135,12 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/stats/generate_well_statistics",
"viash_version" : "0.9.0",
"git_commit" : "21e5572b2c0a77fb384424bdcb31b5d282204cce",
"git_remote" : "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
"git_commit" : "5a42daa1b5457daf455abc9b7820eff80ae27133",
"git_remote" : "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "High-throughput pipeline [WIP]\n",
"info" : {
"test_resources" : [
@@ -3157,7 +3157,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",
@@ -3650,7 +3650,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/htrnaseq/stats/generate_well_statistics",
"tag" : "0.2.0"
"tag" : "v0.2.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/stats/generate_well_statistics/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'stats/generate_well_statistics'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
description = 'Generate summary statistics from BAM files generated by STAR solo.'
author = 'Dries Schaumont, Marijke Van Moerbeke'
}

10
target/nextflow/workflows/htrnaseq/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "htrnaseq"
namespace: "workflows"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -308,8 +308,8 @@ build_info:
output: "target/nextflow/workflows/htrnaseq"
executable: "target/nextflow/workflows/htrnaseq/main.nf"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
dependencies:
- "target/nextflow/stats/combine_star_logs"
- "target/nextflow/stats/generate_pool_statistics"
@@ -323,7 +323,7 @@ build_info:
- "target/nextflow/report/create_report"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -338,7 +338,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

12
target/nextflow/workflows/htrnaseq/main.nf
View File

@@ -1,4 +1,4 @@
// htrnaseq 0.2.0
// htrnaseq v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2809,7 +2809,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "htrnaseq",
"namespace" : "workflows",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Dries Schaumont",
@@ -3210,12 +3210,12 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/workflows/htrnaseq",
"viash_version" : "0.9.0",
"git_commit" : "21e5572b2c0a77fb384424bdcb31b5d282204cce",
"git_remote" : "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
"git_commit" : "5a42daa1b5457daf455abc9b7820eff80ae27133",
"git_remote" : "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "High-throughput pipeline [WIP]\n",
"info" : {
"test_resources" : [
@@ -3232,7 +3232,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",

2
target/nextflow/workflows/htrnaseq/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'workflows/htrnaseq'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
author = 'Dries Schaumont'
}

10
target/nextflow/workflows/parallel_map_wf/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "parallel_map_wf"
namespace: "workflows"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -175,14 +175,14 @@ build_info:
output: "target/nextflow/workflows/parallel_map_wf"
executable: "target/nextflow/workflows/parallel_map_wf/main.nf"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
dependencies:
- "target/nextflow/parallel_map"
- "target/nextflow/workflows/utils/groupWells"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -197,7 +197,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

12
target/nextflow/workflows/parallel_map_wf/main.nf
View File

@@ -1,4 +1,4 @@
// parallel_map_wf 0.2.0
// parallel_map_wf v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2809,7 +2809,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "parallel_map_wf",
"namespace" : "workflows",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Dries Schaumont",
@@ -3028,12 +3028,12 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/workflows/parallel_map_wf",
"viash_version" : "0.9.0",
"git_commit" : "21e5572b2c0a77fb384424bdcb31b5d282204cce",
"git_remote" : "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
"git_commit" : "5a42daa1b5457daf455abc9b7820eff80ae27133",
"git_remote" : "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "High-throughput pipeline [WIP]\n",
"info" : {
"test_resources" : [
@@ -3050,7 +3050,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",

2
target/nextflow/workflows/parallel_map_wf/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'workflows/parallel_map_wf'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
description = 'Map RNA sequencing data, provided as fastq files (paired-end) to a reference genome using STAR Solo.\nInput data must have been demultiplexed beforehand, meaning that a single fastq pair provides data for\none barcode (one well). Multiple wells can be mapped in parallel by providing multiple events to the \nworkflow. Output is provided as mapped output per pool, i.e. one output is provided per pool.\n'
author = 'Dries Schaumont'
}

10
target/nextflow/workflows/utils/groupWells/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "groupWells"
namespace: "workflows/utils"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -185,11 +185,11 @@ build_info:
output: "target/nextflow/workflows/utils/groupWells"
executable: "target/nextflow/workflows/utils/groupWells/main.nf"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -204,7 +204,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

12
target/nextflow/workflows/utils/groupWells/main.nf
View File

@@ -1,4 +1,4 @@
// groupWells 0.2.0
// groupWells v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2809,7 +2809,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "groupWells",
"namespace" : "workflows/utils",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Dries Schaumont",
@@ -3039,12 +3039,12 @@ meta = [
"engine" : "native",
"output" : "target/nextflow/workflows/utils/groupWells",
"viash_version" : "0.9.0",
"git_commit" : "21e5572b2c0a77fb384424bdcb31b5d282204cce",
"git_remote" : "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
"git_commit" : "5a42daa1b5457daf455abc9b7820eff80ae27133",
"git_remote" : "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "High-throughput pipeline [WIP]\n",
"info" : {
"test_resources" : [
@@ -3061,7 +3061,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",

2
target/nextflow/workflows/utils/groupWells/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'workflows/utils/groupWells'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
description = 'N/A\n'
author = 'Dries Schaumont'
}

10
target/nextflow/workflows/well_demultiplex/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "well_demultiplex"
namespace: "workflows"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -255,14 +255,14 @@ build_info:
output: "target/nextflow/workflows/well_demultiplex"
executable: "target/nextflow/workflows/well_demultiplex/main.nf"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
dependencies:
- "target/dependencies/vsh/vsh/biobox/main/nextflow/cutadapt"
- "target/dependencies/vsh/vsh/craftbox/v0.1.0/nextflow/concat_text"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -277,7 +277,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

12
target/nextflow/workflows/well_demultiplex/main.nf
View File

@@ -1,4 +1,4 @@
// well_demultiplex 0.2.0
// well_demultiplex v0.2.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2810,7 +2810,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "well_demultiplex",
"namespace" : "workflows",
"version" : "0.2.0",
"version" : "v0.2.0",
"authors" : [
{
"name" : "Dries Schaumont",
@@ -3134,12 +3134,12 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/workflows/well_demultiplex",
"viash_version" : "0.9.0",
"git_commit" : "21e5572b2c0a77fb384424bdcb31b5d282204cce",
"git_remote" : "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
"git_commit" : "5a42daa1b5457daf455abc9b7820eff80ae27133",
"git_remote" : "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",
"version" : "0.2.0",
"version" : "v0.2.0",
"description" : "High-throughput pipeline [WIP]\n",
"info" : {
"test_resources" : [
@@ -3156,7 +3156,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := '0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
],
"keywords" : [
"bioinformatics",

2
target/nextflow/workflows/well_demultiplex/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'workflows/well_demultiplex'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = '0.2.0'
version = 'v0.2.0'
description = 'Demultiplexing on well level'
author = 'Dries Schaumont, Marijke Van Moerbeke'
}