vsh/htrnaseq
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Build branch v0.2 with version v0.2.0 (5a42daa)

Browse Source 
Build pipeline: viash-hub.htrnaseq.v0.2-4j59d

Source commit: 5a42daa1b5

Source message: Change version from 2.0.0 to v2.0.0
This commit is contained in:
CI
2024-12-18 11:59:17 +00:00
parent 297bb04bca
commit 13ef1ccb6c
59 changed files with 302 additions and 302 deletions
Download Patch File Download Diff File Expand all files Collapse all files

12
target/executable/stats/combine_star_logs/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "combine_star_logs"
namespace: "stats"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -169,7 +169,7 @@ engines:
id: "docker"
image: "python:3.12-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -198,11 +198,11 @@ build_info:
output: "target/executable/stats/combine_star_logs"
executable: "target/executable/stats/combine_star_logs/combine_star_logs"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -217,7 +217,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

14
target/executable/stats/combine_star_logs/combine_star_logs
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# combine_star_logs 0.2.0
# combine_star_logs v0.2.0
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "combine_star_logs 0.2.0"
echo "combine_star_logs v0.2.0"
echo ""
echo "Arguments:"
echo " --barcodes"
@@ -490,10 +490,10 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component stats combine_star_logs"
LABEL org.opencontainers.image.created="2024-12-18T07:22:15Z"
LABEL org.opencontainers.image.created="2024-12-18T10:19:51Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="21e5572b2c0a77fb384424bdcb31b5d282204cce"
LABEL org.opencontainers.image.version="0.2.0"
LABEL org.opencontainers.image.revision="5a42daa1b5457daf455abc9b7820eff80ae27133"
LABEL org.opencontainers.image.version="v0.2.0"
VIASHDOCKER
fi
@@ -629,7 +629,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "combine_star_logs 0.2.0"
echo "combine_star_logs v0.2.0"
exit
;;
--barcodes)
@@ -799,7 +799,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/combine_star_logs:0.2.0'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/combine_star_logs:v0.2.0'
fi
# print dockerfile

12
target/executable/stats/generate_pool_statistics/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "generate_pool_statistics"
namespace: "stats"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -153,7 +153,7 @@ engines:
id: "docker"
image: "python:3.12-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -182,11 +182,11 @@ build_info:
output: "target/executable/stats/generate_pool_statistics"
executable: "target/executable/stats/generate_pool_statistics/generate_pool_statistics"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -201,7 +201,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

14
target/executable/stats/generate_pool_statistics/generate_pool_statistics
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# generate_pool_statistics 0.2.0
# generate_pool_statistics v0.2.0
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "generate_pool_statistics 0.2.0"
echo "generate_pool_statistics v0.2.0"
echo ""
echo "Arguments:"
echo " --nrReadsNrGenesPerChrom"
@@ -483,10 +483,10 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component stats generate_pool_statistics"
LABEL org.opencontainers.image.created="2024-12-18T07:22:14Z"
LABEL org.opencontainers.image.created="2024-12-18T10:19:51Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="21e5572b2c0a77fb384424bdcb31b5d282204cce"
LABEL org.opencontainers.image.version="0.2.0"
LABEL org.opencontainers.image.revision="5a42daa1b5457daf455abc9b7820eff80ae27133"
LABEL org.opencontainers.image.version="v0.2.0"
VIASHDOCKER
fi
@@ -622,7 +622,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "generate_pool_statistics 0.2.0"
echo "generate_pool_statistics v0.2.0"
exit
;;
--nrReadsNrGenesPerChrom)
@@ -741,7 +741,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/generate_pool_statistics:0.2.0'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/generate_pool_statistics:v0.2.0'
fi
# print dockerfile

12
target/executable/stats/generate_well_statistics/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "generate_well_statistics"
namespace: "stats"
version: "0.2.0"
version: "v0.2.0"
authors:
- name: "Dries Schaumont"
roles:
@@ -222,7 +222,7 @@ engines:
id: "docker"
image: "debian:stable-slim"
target_registry: "images.viash-hub.com"
target_tag: "0.2.0"
target_tag: "v0.2.0"
namespace_separator: "/"
setup:
- type: "docker"
@@ -262,11 +262,11 @@ build_info:
output: "target/executable/stats/generate_well_statistics"
executable: "target/executable/stats/generate_well_statistics/generate_well_statistics"
viash_version: "0.9.0"
git_commit: "21e5572b2c0a77fb384424bdcb31b5d282204cce"
git_remote: "https://x-access-token:ghs_rpjBNxIaDX66npG1WE5B4ThkCzDjpl08RGE5@github.com/viash-hub/htrnaseq"
git_commit: "5a42daa1b5457daf455abc9b7820eff80ae27133"
git_remote: "https://x-access-token:ghs_9q00yKbaYnQdm1HSYGHb19BGulqjqG2PNMVd@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "0.2.0"
version: "v0.2.0"
description: "High-throughput pipeline [WIP]\n"
info:
test_resources:
@@ -281,7 +281,7 @@ package_config:
\ dest: 'nextflow_labels.config'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := '0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
keywords:
- "bioinformatics"
- "sequence"

14
target/executable/stats/generate_well_statistics/generate_well_statistics
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# generate_well_statistics 0.2.0
# generate_well_statistics v0.2.0
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -175,7 +175,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "generate_well_statistics 0.2.0"
echo "generate_well_statistics v0.2.0"
echo ""
echo "Generate summary statistics from BAM files generated by STAR solo."
echo ""
@@ -520,10 +520,10 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component stats generate_well_statistics"
LABEL org.opencontainers.image.created="2024-12-18T07:22:15Z"
LABEL org.opencontainers.image.created="2024-12-18T10:19:52Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="21e5572b2c0a77fb384424bdcb31b5d282204cce"
LABEL org.opencontainers.image.version="0.2.0"
LABEL org.opencontainers.image.revision="5a42daa1b5457daf455abc9b7820eff80ae27133"
LABEL org.opencontainers.image.version="v0.2.0"
VIASHDOCKER
fi
@@ -659,7 +659,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "generate_well_statistics 0.2.0"
echo "generate_well_statistics v0.2.0"
exit
;;
--input)
@@ -838,7 +838,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/generate_well_statistics:0.2.0'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/generate_well_statistics:v0.2.0'
fi
# print dockerfile