Build branch main with version main (5a046ba)

Build pipeline: viash-hub.htrnaseq.main-vzhp4 Source commit: 5a046ba003 Source message: Fix detection of FASTQ files with non-alphanumerical sample names. (#65)
2025-08-01 11:53:04 +00:00
parent 6f76b49468
commit 36bd60bf4c
66 changed files with 132 additions and 130 deletions
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -4,6 +4,8 @@

 * Reverted functionality to set `fastq_publish_dir` and `results_publish_dir` using fromState (PR #64).

+* `runner`: fix detection of FASTQ files with non-numerical characters in the sample name (PR #65).
+
 # htrnaseq v0.9.0

 ## Breaking changes
--- a/src/utils/listInputDir/main.nf
+++ b/src/utils/listInputDir/main.nf
@@ -18,7 +18,7 @@ workflow run_wf {

        println("Extracting information from fastq/fasta filenames")
        def processed_fastqs = allFastqs.collect { f ->
-          def regex = ~/^(\w+)_S(\d+)_(L(\d+)_)?R(\d)_(\d+)\.fast[qa](\.gz)?$/
+          def regex = ~/^(\S+)_S(\d+)_(L(\d+)_)?R(\d)_(\d+)\.fast[qa](\.gz)?$/
          def validFastq = f.name ==~ regex

          assert validFastq: "${f} does not match the regex ${regex}"
--- a/target/executable/eset/create_eset/.config.vsh.yaml
+++ b/target/executable/eset/create_eset/.config.vsh.yaml
@@ -206,9 +206,9 @@ build_info:
  output: "target/executable/eset/create_eset"
  executable: "target/executable/eset/create_eset/create_eset"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/executable/eset/create_eset/create_eset
+++ b/target/executable/eset/create_eset/create_eset
@@ -456,9 +456,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR

 LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component eset create_eset"
-LABEL org.opencontainers.image.created="2025-08-01T09:22:57Z"
+LABEL org.opencontainers.image.created="2025-08-01T11:01:09Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/eset/create_fdata/.config.vsh.yaml
+++ b/target/executable/eset/create_fdata/.config.vsh.yaml
@@ -183,9 +183,9 @@ build_info:
  output: "target/executable/eset/create_fdata"
  executable: "target/executable/eset/create_fdata/create_fdata"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/executable/eset/create_fdata/create_fdata
+++ b/target/executable/eset/create_fdata/create_fdata
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component eset create_fdata"
-LABEL org.opencontainers.image.created="2025-08-01T09:22:58Z"
+LABEL org.opencontainers.image.created="2025-08-01T11:01:09Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/eset/create_pdata/.config.vsh.yaml
+++ b/target/executable/eset/create_pdata/.config.vsh.yaml
@@ -197,9 +197,9 @@ build_info:
  output: "target/executable/eset/create_pdata"
  executable: "target/executable/eset/create_pdata/create_pdata"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/executable/eset/create_pdata/create_pdata
+++ b/target/executable/eset/create_pdata/create_pdata
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component eset create_pdata"
-LABEL org.opencontainers.image.created="2025-08-01T09:22:57Z"
+LABEL org.opencontainers.image.created="2025-08-01T11:01:08Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
+++ b/target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
@@ -155,9 +155,9 @@ build_info:
  output: "target/executable/integration_test_components/htrnaseq/check_eset"
  executable: "target/executable/integration_test_components/htrnaseq/check_eset/check_eset"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/executable/integration_test_components/htrnaseq/check_eset/check_eset
+++ b/target/executable/integration_test_components/htrnaseq/check_eset/check_eset
@@ -455,9 +455,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR

 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/htrnaseq check_eset"
-LABEL org.opencontainers.image.created="2025-08-01T09:22:58Z"
+LABEL org.opencontainers.image.created="2025-08-01T11:01:09Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml
+++ b/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml
@@ -164,9 +164,9 @@ build_info:
  output: "target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output"
  executable: "target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output
+++ b/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output
@@ -457,9 +457,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/well_demultiplexing check_cutadapt_output"
-LABEL org.opencontainers.image.created="2025-08-01T09:22:58Z"
+LABEL org.opencontainers.image.created="2025-08-01T11:01:09Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/io/publish_fastqs/.config.vsh.yaml
+++ b/target/executable/io/publish_fastqs/.config.vsh.yaml
@@ -139,9 +139,9 @@ build_info:
  output: "target/executable/io/publish_fastqs"
  executable: "target/executable/io/publish_fastqs/publish_fastqs"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/executable/io/publish_fastqs/publish_fastqs
+++ b/target/executable/io/publish_fastqs/publish_fastqs
@@ -450,9 +450,9 @@ RUN apt-get update && \
  rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.description="Companion container for running component io publish_fastqs"
-LABEL org.opencontainers.image.created="2025-08-01T09:22:59Z"
+LABEL org.opencontainers.image.created="2025-08-01T11:01:10Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/io/publish_results/.config.vsh.yaml
+++ b/target/executable/io/publish_results/.config.vsh.yaml
@@ -202,9 +202,9 @@ build_info:
  output: "target/executable/io/publish_results"
  executable: "target/executable/io/publish_results/publish_results"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/executable/io/publish_results/publish_results
+++ b/target/executable/io/publish_results/publish_results
@@ -450,9 +450,9 @@ RUN apt-get update && \
  rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.description="Companion container for running component io publish_results"
-LABEL org.opencontainers.image.created="2025-08-01T09:22:59Z"
+LABEL org.opencontainers.image.created="2025-08-01T11:01:10Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/parallel_map/.config.vsh.yaml
+++ b/target/executable/parallel_map/.config.vsh.yaml
@@ -285,9 +285,9 @@ build_info:
  output: "target/executable/parallel_map"
  executable: "target/executable/parallel_map/parallel_map"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/executable/parallel_map/parallel_map
+++ b/target/executable/parallel_map/parallel_map
@@ -461,9 +461,9 @@ ENV STAR_BINARY=STAR
 COPY STAR /usr/local/bin/$STAR_BINARY
 LABEL org.opencontainers.image.authors="Dries Schaumont, Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component parallel_map"
-LABEL org.opencontainers.image.created="2025-08-01T09:22:59Z"
+LABEL org.opencontainers.image.created="2025-08-01T11:01:10Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/report/create_report/.config.vsh.yaml
+++ b/target/executable/report/create_report/.config.vsh.yaml
@@ -215,9 +215,9 @@ build_info:
  output: "target/executable/report/create_report"
  executable: "target/executable/report/create_report/create_report"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/executable/report/create_report/create_report
+++ b/target/executable/report/create_report/create_report
@@ -465,9 +465,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR

 LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component report create_report"
-LABEL org.opencontainers.image.created="2025-08-01T09:22:59Z"
+LABEL org.opencontainers.image.created="2025-08-01T11:01:10Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/stats/combine_star_logs/.config.vsh.yaml
+++ b/target/executable/stats/combine_star_logs/.config.vsh.yaml
@@ -204,9 +204,9 @@ build_info:
  output: "target/executable/stats/combine_star_logs"
  executable: "target/executable/stats/combine_star_logs/combine_star_logs"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/executable/stats/combine_star_logs/combine_star_logs
+++ b/target/executable/stats/combine_star_logs/combine_star_logs
@@ -457,9 +457,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component stats combine_star_logs"
-LABEL org.opencontainers.image.created="2025-08-01T09:22:57Z"
+LABEL org.opencontainers.image.created="2025-08-01T11:01:09Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/stats/generate_pool_statistics/.config.vsh.yaml
+++ b/target/executable/stats/generate_pool_statistics/.config.vsh.yaml
@@ -188,9 +188,9 @@ build_info:
  output: "target/executable/stats/generate_pool_statistics"
  executable: "target/executable/stats/generate_pool_statistics/generate_pool_statistics"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/executable/stats/generate_pool_statistics/generate_pool_statistics
+++ b/target/executable/stats/generate_pool_statistics/generate_pool_statistics
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component stats generate_pool_statistics"
-LABEL org.opencontainers.image.created="2025-08-01T09:22:59Z"
+LABEL org.opencontainers.image.created="2025-08-01T11:01:10Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/stats/generate_well_statistics/.config.vsh.yaml
+++ b/target/executable/stats/generate_well_statistics/.config.vsh.yaml
@@ -270,9 +270,9 @@ build_info:
  output: "target/executable/stats/generate_well_statistics"
  executable: "target/executable/stats/generate_well_statistics/generate_well_statistics"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/executable/stats/generate_well_statistics/generate_well_statistics
+++ b/target/executable/stats/generate_well_statistics/generate_well_statistics
@@ -461,9 +461,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component stats generate_well_statistics"
-LABEL org.opencontainers.image.created="2025-08-01T09:22:57Z"
+LABEL org.opencontainers.image.created="2025-08-01T11:01:08Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/executable/utils/save_params/.config.vsh.yaml
+++ b/target/executable/utils/save_params/.config.vsh.yaml
@@ -151,9 +151,9 @@ build_info:
  output: "target/executable/utils/save_params"
  executable: "target/executable/utils/save_params/save_params"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/executable/utils/save_params/save_params
+++ b/target/executable/utils/save_params/save_params
@@ -453,9 +453,9 @@ RUN pip install --upgrade pip && \
  pip install --upgrade --no-cache-dir "pyyaml"

 LABEL org.opencontainers.image.description="Companion container for running component utils save_params"
-LABEL org.opencontainers.image.created="2025-08-01T09:22:59Z"
+LABEL org.opencontainers.image.created="2025-08-01T11:01:10Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
 LABEL org.opencontainers.image.version="main"

 VIASHDOCKER
--- a/target/nextflow/eset/create_eset/.config.vsh.yaml
+++ b/target/nextflow/eset/create_eset/.config.vsh.yaml
@@ -206,9 +206,9 @@ build_info:
  output: "target/nextflow/eset/create_eset"
  executable: "target/nextflow/eset/create_eset/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/eset/create_eset/main.nf
+++ b/target/nextflow/eset/create_eset/main.nf
@@ -3309,9 +3309,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/eset/create_eset",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/eset/create_fdata/.config.vsh.yaml
+++ b/target/nextflow/eset/create_fdata/.config.vsh.yaml
@@ -183,9 +183,9 @@ build_info:
  output: "target/nextflow/eset/create_fdata"
  executable: "target/nextflow/eset/create_fdata/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/eset/create_fdata/main.nf
+++ b/target/nextflow/eset/create_fdata/main.nf
@@ -3279,9 +3279,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/eset/create_fdata",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/eset/create_pdata/.config.vsh.yaml
+++ b/target/nextflow/eset/create_pdata/.config.vsh.yaml
@@ -197,9 +197,9 @@ build_info:
  output: "target/nextflow/eset/create_pdata"
  executable: "target/nextflow/eset/create_pdata/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/eset/create_pdata/main.nf
+++ b/target/nextflow/eset/create_pdata/main.nf
@@ -3293,9 +3293,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/eset/create_pdata",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
+++ b/target/nextflow/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
@@ -155,9 +155,9 @@ build_info:
  output: "target/nextflow/integration_test_components/htrnaseq/check_eset"
  executable: "target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf
+++ b/target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf
@@ -3233,9 +3233,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/integration_test_components/htrnaseq/check_eset",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml
+++ b/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml
@@ -164,9 +164,9 @@ build_info:
  output: "target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output"
  executable: "target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/main.nf
+++ b/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/main.nf
@@ -3244,9 +3244,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/io/publish_fastqs/.config.vsh.yaml
+++ b/target/nextflow/io/publish_fastqs/.config.vsh.yaml
@@ -139,9 +139,9 @@ build_info:
  output: "target/nextflow/io/publish_fastqs"
  executable: "target/nextflow/io/publish_fastqs/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/io/publish_fastqs/main.nf
+++ b/target/nextflow/io/publish_fastqs/main.nf
@@ -3207,9 +3207,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/io/publish_fastqs",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/io/publish_results/.config.vsh.yaml
+++ b/target/nextflow/io/publish_results/.config.vsh.yaml
@@ -202,9 +202,9 @@ build_info:
  output: "target/nextflow/io/publish_results"
  executable: "target/nextflow/io/publish_results/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/io/publish_results/main.nf
+++ b/target/nextflow/io/publish_results/main.nf
@@ -3277,9 +3277,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/io/publish_results",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/parallel_map/.config.vsh.yaml
+++ b/target/nextflow/parallel_map/.config.vsh.yaml
@@ -285,9 +285,9 @@ build_info:
  output: "target/nextflow/parallel_map"
  executable: "target/nextflow/parallel_map/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/parallel_map/main.nf
+++ b/target/nextflow/parallel_map/main.nf
@@ -3379,9 +3379,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/parallel_map",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/report/create_report/.config.vsh.yaml
+++ b/target/nextflow/report/create_report/.config.vsh.yaml
@@ -215,9 +215,9 @@ build_info:
  output: "target/nextflow/report/create_report"
  executable: "target/nextflow/report/create_report/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/report/create_report/main.nf
+++ b/target/nextflow/report/create_report/main.nf
@@ -3323,9 +3323,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/report/create_report",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/stats/combine_star_logs/.config.vsh.yaml
+++ b/target/nextflow/stats/combine_star_logs/.config.vsh.yaml
@@ -204,9 +204,9 @@ build_info:
  output: "target/nextflow/stats/combine_star_logs"
  executable: "target/nextflow/stats/combine_star_logs/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/stats/combine_star_logs/main.nf
+++ b/target/nextflow/stats/combine_star_logs/main.nf
@@ -3295,9 +3295,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/stats/combine_star_logs",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml
+++ b/target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml
@@ -188,9 +188,9 @@ build_info:
  output: "target/nextflow/stats/generate_pool_statistics"
  executable: "target/nextflow/stats/generate_pool_statistics/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/stats/generate_pool_statistics/main.nf
+++ b/target/nextflow/stats/generate_pool_statistics/main.nf
@@ -3279,9 +3279,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/stats/generate_pool_statistics",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/stats/generate_well_statistics/.config.vsh.yaml
+++ b/target/nextflow/stats/generate_well_statistics/.config.vsh.yaml
@@ -270,9 +270,9 @@ build_info:
  output: "target/nextflow/stats/generate_well_statistics"
  executable: "target/nextflow/stats/generate_well_statistics/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/stats/generate_well_statistics/main.nf
+++ b/target/nextflow/stats/generate_well_statistics/main.nf
@@ -3374,9 +3374,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/stats/generate_well_statistics",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/utils/concatRuns/.config.vsh.yaml
+++ b/target/nextflow/utils/concatRuns/.config.vsh.yaml
@@ -160,9 +160,9 @@ build_info:
  output: "target/nextflow/utils/concatRuns"
  executable: "target/nextflow/utils/concatRuns/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
  dependencies:
  - "target/dependencies/vsh/vsh/craftbox/v0.2.0/nextflow/concat_text"
 package_config:
--- a/target/nextflow/utils/concatRuns/main.nf
+++ b/target/nextflow/utils/concatRuns/main.nf
@@ -3229,9 +3229,9 @@ meta = [
    "engine" : "native|native",
    "output" : "target/nextflow/utils/concatRuns",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/utils/listInputDir/.config.vsh.yaml
+++ b/target/nextflow/utils/listInputDir/.config.vsh.yaml
@@ -171,9 +171,9 @@ build_info:
  output: "target/nextflow/utils/listInputDir"
  executable: "target/nextflow/utils/listInputDir/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/utils/listInputDir/main.nf
+++ b/target/nextflow/utils/listInputDir/main.nf
@@ -3239,9 +3239,9 @@ meta = [
    "engine" : "native|native",
    "output" : "target/nextflow/utils/listInputDir",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
@@ -3310,7 +3310,7 @@ workflow run_wf {

        println("Extracting information from fastq/fasta filenames")
        def processed_fastqs = allFastqs.collect { f ->
-          def regex = ~/^(\w+)_S(\d+)_(L(\d+)_)?R(\d)_(\d+)\.fast[qa](\.gz)?$/
+          def regex = ~/^(\S+)_S(\d+)_(L(\d+)_)?R(\d)_(\d+)\.fast[qa](\.gz)?$/
          def validFastq = f.name ==~ regex

          assert validFastq: "${f} does not match the regex ${regex}"
--- a/target/nextflow/utils/save_params/.config.vsh.yaml
+++ b/target/nextflow/utils/save_params/.config.vsh.yaml
@@ -151,9 +151,9 @@ build_info:
  output: "target/nextflow/utils/save_params"
  executable: "target/nextflow/utils/save_params/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/utils/save_params/main.nf
+++ b/target/nextflow/utils/save_params/main.nf
@@ -3223,9 +3223,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/utils/save_params",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/workflows/htrnaseq/.config.vsh.yaml
+++ b/target/nextflow/workflows/htrnaseq/.config.vsh.yaml
@@ -345,9 +345,9 @@ build_info:
  output: "target/nextflow/workflows/htrnaseq"
  executable: "target/nextflow/workflows/htrnaseq/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
  dependencies:
  - "target/nextflow/stats/combine_star_logs"
  - "target/nextflow/stats/generate_pool_statistics"
--- a/target/nextflow/workflows/htrnaseq/main.nf
+++ b/target/nextflow/workflows/htrnaseq/main.nf
@@ -3484,9 +3484,9 @@ meta = [
    "engine" : "native|native",
    "output" : "target/nextflow/workflows/htrnaseq",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/workflows/runner/.config.vsh.yaml
+++ b/target/nextflow/workflows/runner/.config.vsh.yaml
@@ -235,9 +235,9 @@ build_info:
  output: "target/nextflow/workflows/runner"
  executable: "target/nextflow/workflows/runner/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
  dependencies:
  - "target/nextflow/utils/listInputDir"
  - "target/nextflow/workflows/htrnaseq"
--- a/target/nextflow/workflows/runner/main.nf
+++ b/target/nextflow/workflows/runner/main.nf
@@ -3333,9 +3333,9 @@ meta = [
    "engine" : "native|native",
    "output" : "target/nextflow/workflows/runner",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/workflows/well_demultiplex/.config.vsh.yaml
+++ b/target/nextflow/workflows/well_demultiplex/.config.vsh.yaml
@@ -217,9 +217,9 @@ build_info:
  output: "target/nextflow/workflows/well_demultiplex"
  executable: "target/nextflow/workflows/well_demultiplex/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
  dependencies:
  - "target/dependencies/vsh/vsh/biobox/v0.3.1/nextflow/cutadapt"
  - "target/dependencies/vsh/vsh/craftbox/v0.2.0/nextflow/concat_text"
--- a/target/nextflow/workflows/well_demultiplex/main.nf
+++ b/target/nextflow/workflows/well_demultiplex/main.nf
@@ -3319,9 +3319,9 @@ meta = [
    "engine" : "native|native",
    "output" : "target/nextflow/workflows/well_demultiplex",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",
--- a/target/nextflow/workflows/well_metadata/.config.vsh.yaml
+++ b/target/nextflow/workflows/well_metadata/.config.vsh.yaml
@@ -215,9 +215,9 @@ build_info:
  output: "target/nextflow/workflows/well_metadata"
  executable: "target/nextflow/workflows/well_metadata/main.nf"
  viash_version: "0.9.4"
-  git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
+  git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
  git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-11-g10d3b38"
+  git_tag: "v0.7.2-12-g5a046ba"
 package_config:
  name: "htrnaseq"
  version: "main"
--- a/target/nextflow/workflows/well_metadata/main.nf
+++ b/target/nextflow/workflows/well_metadata/main.nf
@@ -3299,9 +3299,9 @@ meta = [
    "engine" : "native|native",
    "output" : "target/nextflow/workflows/well_metadata",
    "viash_version" : "0.9.4",
-    "git_commit" : "10d3b382d6ee8368c846736f24b076eeddfc8ce2",
+    "git_commit" : "5a046ba00351f55ce8e9f524bc329dabda0a7a14",
    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-11-g10d3b38"
+    "git_tag" : "v0.7.2-12-g5a046ba"
  },
  "package_config" : {
    "name" : "htrnaseq",