vsh/htrnaseq
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Build branch main with version main (5a046ba)

Browse Source 
Build pipeline: viash-hub.htrnaseq.main-vzhp4

Source commit: 5a046ba003

Source message: Fix detection of FASTQ files with non-alphanumerical sample names. (#65)
This commit is contained in:
CI
2025-08-01 11:53:04 +00:00
parent 6f76b49468
commit 36bd60bf4c
66 changed files with 132 additions and 130 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
target/executable/eset/create_eset/.config.vsh.yaml
View File

@@ -206,9 +206,9 @@ build_info:
output: "target/executable/eset/create_eset"
executable: "target/executable/eset/create_eset/create_eset"
viash_version: "0.9.4"
git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
git_remote: "https://github.com/viash-hub/htrnaseq"
git_tag: "v0.7.2-11-g10d3b38"
git_tag: "v0.7.2-12-g5a046ba"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/eset/create_eset/create_eset
View File

@@ -456,9 +456,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_eset"
LABEL org.opencontainers.image.created="2025-08-01T09:22:57Z"
LABEL org.opencontainers.image.created="2025-08-01T11:01:09Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/eset/create_fdata/.config.vsh.yaml
View File

@@ -183,9 +183,9 @@ build_info:
output: "target/executable/eset/create_fdata"
executable: "target/executable/eset/create_fdata/create_fdata"
viash_version: "0.9.4"
git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
git_remote: "https://github.com/viash-hub/htrnaseq"
git_tag: "v0.7.2-11-g10d3b38"
git_tag: "v0.7.2-12-g5a046ba"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/eset/create_fdata/create_fdata
View File

@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_fdata"
LABEL org.opencontainers.image.created="2025-08-01T09:22:58Z"
LABEL org.opencontainers.image.created="2025-08-01T11:01:09Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/eset/create_pdata/.config.vsh.yaml
View File

@@ -197,9 +197,9 @@ build_info:
output: "target/executable/eset/create_pdata"
executable: "target/executable/eset/create_pdata/create_pdata"
viash_version: "0.9.4"
git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
git_remote: "https://github.com/viash-hub/htrnaseq"
git_tag: "v0.7.2-11-g10d3b38"
git_tag: "v0.7.2-12-g5a046ba"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/eset/create_pdata/create_pdata
View File

@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_pdata"
LABEL org.opencontainers.image.created="2025-08-01T09:22:57Z"
LABEL org.opencontainers.image.created="2025-08-01T11:01:08Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
View File

@@ -155,9 +155,9 @@ build_info:
output: "target/executable/integration_test_components/htrnaseq/check_eset"
executable: "target/executable/integration_test_components/htrnaseq/check_eset/check_eset"
viash_version: "0.9.4"
git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
git_remote: "https://github.com/viash-hub/htrnaseq"
git_tag: "v0.7.2-11-g10d3b38"
git_tag: "v0.7.2-12-g5a046ba"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/integration_test_components/htrnaseq/check_eset/check_eset
View File

@@ -455,9 +455,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/htrnaseq check_eset"
LABEL org.opencontainers.image.created="2025-08-01T09:22:58Z"
LABEL org.opencontainers.image.created="2025-08-01T11:01:09Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml
View File

@@ -164,9 +164,9 @@ build_info:
output: "target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output"
executable: "target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output"
viash_version: "0.9.4"
git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
git_remote: "https://github.com/viash-hub/htrnaseq"
git_tag: "v0.7.2-11-g10d3b38"
git_tag: "v0.7.2-12-g5a046ba"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output
View File

@@ -457,9 +457,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/well_demultiplexing check_cutadapt_output"
LABEL org.opencontainers.image.created="2025-08-01T09:22:58Z"
LABEL org.opencontainers.image.created="2025-08-01T11:01:09Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/io/publish_fastqs/.config.vsh.yaml
View File

@@ -139,9 +139,9 @@ build_info:
output: "target/executable/io/publish_fastqs"
executable: "target/executable/io/publish_fastqs/publish_fastqs"
viash_version: "0.9.4"
git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
git_remote: "https://github.com/viash-hub/htrnaseq"
git_tag: "v0.7.2-11-g10d3b38"
git_tag: "v0.7.2-12-g5a046ba"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/io/publish_fastqs/publish_fastqs
View File

@@ -450,9 +450,9 @@ RUN apt-get update && \
rm -rf /var/lib/apt/lists/*
LABEL org.opencontainers.image.description="Companion container for running component io publish_fastqs"
LABEL org.opencontainers.image.created="2025-08-01T09:22:59Z"
LABEL org.opencontainers.image.created="2025-08-01T11:01:10Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/io/publish_results/.config.vsh.yaml
View File

@@ -202,9 +202,9 @@ build_info:
output: "target/executable/io/publish_results"
executable: "target/executable/io/publish_results/publish_results"
viash_version: "0.9.4"
git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
git_remote: "https://github.com/viash-hub/htrnaseq"
git_tag: "v0.7.2-11-g10d3b38"
git_tag: "v0.7.2-12-g5a046ba"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/io/publish_results/publish_results
View File

@@ -450,9 +450,9 @@ RUN apt-get update && \
rm -rf /var/lib/apt/lists/*
LABEL org.opencontainers.image.description="Companion container for running component io publish_results"
LABEL org.opencontainers.image.created="2025-08-01T09:22:59Z"
LABEL org.opencontainers.image.created="2025-08-01T11:01:10Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/parallel_map/.config.vsh.yaml
View File

@@ -285,9 +285,9 @@ build_info:
output: "target/executable/parallel_map"
executable: "target/executable/parallel_map/parallel_map"
viash_version: "0.9.4"
git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
git_remote: "https://github.com/viash-hub/htrnaseq"
git_tag: "v0.7.2-11-g10d3b38"
git_tag: "v0.7.2-12-g5a046ba"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/parallel_map/parallel_map
View File

@@ -461,9 +461,9 @@ ENV STAR_BINARY=STAR
COPY STAR /usr/local/bin/$STAR_BINARY
LABEL org.opencontainers.image.authors="Dries Schaumont, Toni Verbeiren"
LABEL org.opencontainers.image.description="Companion container for running component parallel_map"
LABEL org.opencontainers.image.created="2025-08-01T09:22:59Z"
LABEL org.opencontainers.image.created="2025-08-01T11:01:10Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/report/create_report/.config.vsh.yaml
View File

@@ -215,9 +215,9 @@ build_info:
output: "target/executable/report/create_report"
executable: "target/executable/report/create_report/create_report"
viash_version: "0.9.4"
git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
git_remote: "https://github.com/viash-hub/htrnaseq"
git_tag: "v0.7.2-11-g10d3b38"
git_tag: "v0.7.2-12-g5a046ba"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/report/create_report/create_report
View File

@@ -465,9 +465,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component report create_report"
LABEL org.opencontainers.image.created="2025-08-01T09:22:59Z"
LABEL org.opencontainers.image.created="2025-08-01T11:01:10Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/stats/combine_star_logs/.config.vsh.yaml
View File

@@ -204,9 +204,9 @@ build_info:
output: "target/executable/stats/combine_star_logs"
executable: "target/executable/stats/combine_star_logs/combine_star_logs"
viash_version: "0.9.4"
git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
git_remote: "https://github.com/viash-hub/htrnaseq"
git_tag: "v0.7.2-11-g10d3b38"
git_tag: "v0.7.2-12-g5a046ba"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/stats/combine_star_logs/combine_star_logs
View File

@@ -457,9 +457,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component stats combine_star_logs"
LABEL org.opencontainers.image.created="2025-08-01T09:22:57Z"
LABEL org.opencontainers.image.created="2025-08-01T11:01:09Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/stats/generate_pool_statistics/.config.vsh.yaml
View File

@@ -188,9 +188,9 @@ build_info:
output: "target/executable/stats/generate_pool_statistics"
executable: "target/executable/stats/generate_pool_statistics/generate_pool_statistics"
viash_version: "0.9.4"
git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
git_remote: "https://github.com/viash-hub/htrnaseq"
git_tag: "v0.7.2-11-g10d3b38"
git_tag: "v0.7.2-12-g5a046ba"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/stats/generate_pool_statistics/generate_pool_statistics
View File

@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component stats generate_pool_statistics"
LABEL org.opencontainers.image.created="2025-08-01T09:22:59Z"
LABEL org.opencontainers.image.created="2025-08-01T11:01:10Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/stats/generate_well_statistics/.config.vsh.yaml
View File

@@ -270,9 +270,9 @@ build_info:
output: "target/executable/stats/generate_well_statistics"
executable: "target/executable/stats/generate_well_statistics/generate_well_statistics"
viash_version: "0.9.4"
git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
git_remote: "https://github.com/viash-hub/htrnaseq"
git_tag: "v0.7.2-11-g10d3b38"
git_tag: "v0.7.2-12-g5a046ba"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/stats/generate_well_statistics/generate_well_statistics
View File

@@ -461,9 +461,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component stats generate_well_statistics"
LABEL org.opencontainers.image.created="2025-08-01T09:22:57Z"
LABEL org.opencontainers.image.created="2025-08-01T11:01:08Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/utils/save_params/.config.vsh.yaml
View File

@@ -151,9 +151,9 @@ build_info:
output: "target/executable/utils/save_params"
executable: "target/executable/utils/save_params/save_params"
viash_version: "0.9.4"
git_commit: "10d3b382d6ee8368c846736f24b076eeddfc8ce2"
git_commit: "5a046ba00351f55ce8e9f524bc329dabda0a7a14"
git_remote: "https://github.com/viash-hub/htrnaseq"
git_tag: "v0.7.2-11-g10d3b38"
git_tag: "v0.7.2-12-g5a046ba"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/utils/save_params/save_params
View File

@@ -453,9 +453,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "pyyaml"
LABEL org.opencontainers.image.description="Companion container for running component utils save_params"
LABEL org.opencontainers.image.created="2025-08-01T09:22:59Z"
LABEL org.opencontainers.image.created="2025-08-01T11:01:10Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="10d3b382d6ee8368c846736f24b076eeddfc8ce2"
LABEL org.opencontainers.image.revision="5a046ba00351f55ce8e9f524bc329dabda0a7a14"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER