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Build branch main with version main (e3a7de4)

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Build pipeline: viash-hub.htrnaseq.main-x6qhq

Source commit: e3a7de40e8

Source message: Fix for cutadapt's --no-indels not being applied (#24)
This commit is contained in:
CI
2024-12-19 14:11:12 +00:00
parent 51245a8027
commit 51a1df053e
50 changed files with 141 additions and 139 deletions
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2
CHANGELOG.md
View File

@@ -2,7 +2,7 @@
# Minor changes
* Use `v0.2.0` version of cutadapt instead of `main` (PR #23).
* Use `v0.3.0` version of cutadapt instead of `main` (PR #23 and PR #24).
# demultiplex v0.2.0

2
src/workflows/well_demultiplex/config.vsh.yaml
View File

@@ -85,7 +85,7 @@ repositories:
- name: bb
type: vsh
repo: biobox
tag: v0.2.0
tag: v0.3.0
- name: cb
type: vsh
repo: craftbox

17
target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/cutadapt/.config.vsh.yaml → target/dependencies/vsh/vsh/biobox/v0.3.0/nextflow/cutadapt/.config.vsh.yaml
View File

@@ -1,5 +1,5 @@
name: "cutadapt"
version: "v0.2.0"
version: "v0.3.0"
authors:
- name: "Toni Verbeiren"
roles:
@@ -251,7 +251,7 @@ argument_groups:
direction: "input"
multiple: false
multiple_sep: ";"
- type: "boolean_false"
- type: "boolean_true"
name: "--no_indels"
description: "Allow only mismatches in alignments.\n"
info: null
@@ -286,7 +286,7 @@ argument_groups:
description: "Interpret IUPAC wildcards in reads.\n"
info: null
direction: "input"
- type: "boolean_false"
- type: "boolean_true"
name: "--no_match_adapter_wildcards"
description: "Do not interpret IUPAC wildcards in adapters.\n"
info: null
@@ -718,7 +718,7 @@ engines:
id: "docker"
image: "python:3.12"
target_registry: "images.viash-hub.com"
target_tag: "v0.2.0"
target_tag: "v0.3.0"
namespace_separator: "/"
setup:
- type: "python"
@@ -740,11 +740,12 @@ build_info:
output: "target/nextflow/cutadapt"
executable: "target/nextflow/cutadapt/main.nf"
viash_version: "0.9.0"
git_commit: "7e530218844c373048bc33de58f021b6460642e5"
git_remote: "https://x-access-token:ghs_kiUBq39QrAlnG6IaeAcTcXhllzqpOV4LDB3e@github.com/viash-hub/biobox"
git_commit: "d86bd5cf62104af02caa852aacd352b1aa97ed60"
git_remote: "https://x-access-token:ghs_EwAUAMYJ0K4VBHlAEMs4ZP2OyQYqJM0PSfEO@github.com/viash-hub/biobox"
git_tag: "v0.2.0-29-gd86bd5c"
package_config:
name: "biobox"
version: "v0.2.0"
version: "v0.3.0"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0"
@@ -754,7 +755,7 @@ package_config:
- ".requirements.commands := ['ps']\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.2.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.3.0'"
keywords:
- "bioinformatics"
- "modules"

27
target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/cutadapt/main.nf → target/dependencies/vsh/vsh/biobox/v0.3.0/nextflow/cutadapt/main.nf
View File

@@ -1,4 +1,4 @@
// cutadapt v0.2.0
// cutadapt v0.3.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2808,7 +2808,7 @@ meta = [
"resources_dir": moduleDir.toRealPath().normalize(),
"config": processConfig(readJsonBlob('''{
"name" : "cutadapt",
"version" : "v0.2.0",
"version" : "v0.3.0",
"authors" : [
{
"name" : "Toni Verbeiren",
@@ -3063,7 +3063,7 @@ meta = [
"multiple_sep" : ";"
},
{
"type" : "boolean_false",
"type" : "boolean_true",
"name" : "--no_indels",
"description" : "Allow only mismatches in alignments.\n",
"direction" : "input"
@@ -3105,7 +3105,7 @@ meta = [
"direction" : "input"
},
{
"type" : "boolean_false",
"type" : "boolean_true",
"name" : "--no_match_adapter_wildcards",
"description" : "Do not interpret IUPAC wildcards in adapters.\n",
"direction" : "input"
@@ -3589,7 +3589,7 @@ meta = [
"id" : "docker",
"image" : "python:3.12",
"target_registry" : "images.viash-hub.com",
"target_tag" : "v0.2.0",
"target_tag" : "v0.3.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3619,12 +3619,13 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/cutadapt",
"viash_version" : "0.9.0",
"git_commit" : "7e530218844c373048bc33de58f021b6460642e5",
"git_remote" : "https://x-access-token:ghs_kiUBq39QrAlnG6IaeAcTcXhllzqpOV4LDB3e@github.com/viash-hub/biobox"
"git_commit" : "d86bd5cf62104af02caa852aacd352b1aa97ed60",
"git_remote" : "https://x-access-token:ghs_EwAUAMYJ0K4VBHlAEMs4ZP2OyQYqJM0PSfEO@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-29-gd86bd5c"
},
"package_config" : {
"name" : "biobox",
"version" : "v0.2.0",
"version" : "v0.3.0",
"description" : "A collection of bioinformatics tools for working with sequence data.\n",
"viash_version" : "0.9.0",
"source" : "src",
@@ -3633,7 +3634,7 @@ meta = [
".requirements.commands := ['ps']\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := 'v0.2.0'"
".engines[.type == 'docker'].target_tag := 'v0.3.0'"
],
"keywords" : [
"bioinformatics",
@@ -3825,9 +3826,9 @@ debug
# Input arguments
###########################################################
echo ">> Parsing input arguments"
[[ "\\$par_no_indels" == "true" ]] && unset par_no_indels
[[ "\\$par_no_indels" == "false" ]] && unset par_no_indels
[[ "\\$par_match_read_wildcards" == "false" ]] && unset par_match_read_wildcards
[[ "\\$par_no_match_adapter_wildcards" == "true" ]] && unset par_no_match_adapter_wildcards
[[ "\\$par_no_match_adapter_wildcards" == "false" ]] && unset par_no_match_adapter_wildcards
[[ "\\$par_revcomp" == "false" ]] && unset par_revcomp
input_args=\\$(echo \\\\
@@ -3837,7 +3838,7 @@ input_args=\\$(echo \\\\
\\${par_overlap:+--overlap "\\${par_overlap}"} \\\\
\\${par_match_read_wildcards:+--match-read-wildcards} \\\\
\\${par_no_match_adapter_wildcards:+--no-match-adapter-wildcards} \\\\
\\${par_action:+--action "\\${par_action}"} \\\\
\\${par_action:+--action="\\${par_action}"} \\\\
\\${par_revcomp:+--revcomp} \\\\
)
debug "Arguments to cutadapt:"
@@ -4346,7 +4347,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/biobox/cutadapt",
"tag" : "v0.2.0"
"tag" : "v0.3.0"
},
"tag" : "$id"
}'''),

2
target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/cutadapt/nextflow.config → target/dependencies/vsh/vsh/biobox/v0.3.0/nextflow/cutadapt/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'cutadapt'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = 'v0.2.0'
version = 'v0.3.0'
description = 'Cutadapt removes adapter sequences from high-throughput sequencing reads.\n'
author = 'Toni Verbeiren'
}

42
target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/cutadapt/nextflow_schema.json → target/dependencies/vsh/vsh/biobox/v0.3.0/nextflow/cutadapt/nextflow_schema.json
View File

@@ -180,7 +180,7 @@
"description": "Type: `boolean_true`, default: `false`. Treat adapters given with -a/-A etc",
"help_text": "Type: `boolean_true`, default: `false`. Treat adapters given with -a/-A etc. as pairs. Either both\nor none are removed from each read pair.\n"
,
"default": "False"
"default":false
}
@@ -203,7 +203,7 @@
"description": "Type: `boolean_true`, default: `false`. Read and/or write interleaved paired-end reads",
"help_text": "Type: `boolean_true`, default: `false`. Read and/or write interleaved paired-end reads.\n"
,
"default": "False"
"default":false
}
@@ -251,10 +251,10 @@
"no_indels": {
"type":
"boolean",
"description": "Type: `boolean_false`, default: `true`. Allow only mismatches in alignments",
"help_text": "Type: `boolean_false`, default: `true`. Allow only mismatches in alignments.\n"
"description": "Type: `boolean_true`, default: `false`. Allow only mismatches in alignments",
"help_text": "Type: `boolean_true`, default: `false`. Allow only mismatches in alignments.\n"
,
"default": "True"
"default":false
}
@@ -285,7 +285,7 @@
"description": "Type: `boolean_true`, default: `false`. Interpret IUPAC wildcards in reads",
"help_text": "Type: `boolean_true`, default: `false`. Interpret IUPAC wildcards in reads.\n"
,
"default": "False"
"default":false
}
@@ -293,10 +293,10 @@
"no_match_adapter_wildcards": {
"type":
"boolean",
"description": "Type: `boolean_false`, default: `true`. Do not interpret IUPAC wildcards in adapters",
"help_text": "Type: `boolean_false`, default: `true`. Do not interpret IUPAC wildcards in adapters.\n"
"description": "Type: `boolean_true`, default: `false`. Do not interpret IUPAC wildcards in adapters",
"help_text": "Type: `boolean_true`, default: `false`. Do not interpret IUPAC wildcards in adapters.\n"
,
"default": "True"
"default":false
}
@@ -319,7 +319,7 @@
"description": "Type: `boolean_true`, default: `false`. Check both the read and its reverse complement for adapter\nmatches",
"help_text": "Type: `boolean_true`, default: `false`. Check both the read and its reverse complement for adapter\nmatches. If match is on reverse-complemented version,\noutput that one.\n"
,
"default": "False"
"default":false
}
@@ -422,7 +422,7 @@
"description": "Type: `boolean_true`, default: `false`. Trim poly-A tails",
"help_text": "Type: `boolean_true`, default: `false`. Trim poly-A tails"
,
"default": "False"
"default":false
}
@@ -443,7 +443,7 @@
"description": "Type: `boolean_true`, default: `false`. Trim N\u0027s on ends of reads",
"help_text": "Type: `boolean_true`, default: `false`. Trim N\u0027s on ends of reads."
,
"default": "False"
"default":false
}
@@ -504,7 +504,7 @@
"description": "Type: `boolean_true`, default: `false`. Change negative quality values to zero",
"help_text": "Type: `boolean_true`, default: `false`. Change negative quality values to zero."
,
"default": "False"
"default":false
}
@@ -575,7 +575,7 @@
"description": "Type: `boolean_true`, default: `false`. Discard reads that contain an adapter",
"help_text": "Type: `boolean_true`, default: `false`. Discard reads that contain an adapter. Use also -O to\navoid discarding too many randomly matching reads.\n"
,
"default": "False"
"default":false
}
@@ -586,7 +586,7 @@
"description": "Type: `boolean_true`, default: `false`. Discard reads that do not contain an adapter",
"help_text": "Type: `boolean_true`, default: `false`. Discard reads that do not contain an adapter.\n"
,
"default": "False"
"default":false
}
@@ -597,7 +597,7 @@
"description": "Type: `boolean_true`, default: `false`. Discard reads that did not pass CASAVA filtering (header\nhas :Y:)",
"help_text": "Type: `boolean_true`, default: `false`. Discard reads that did not pass CASAVA filtering (header\nhas :Y:).\n"
,
"default": "False"
"default":false
}
@@ -630,7 +630,7 @@
"description": "Type: `boolean_true`, default: `false`. Write report in JSON format to this file",
"help_text": "Type: `boolean_true`, default: `false`. Write report in JSON format to this file.\n"
,
"default": "False"
"default":false
}
@@ -641,7 +641,7 @@
"description": "Type: List of `file`, required, default: `$id.$key.output_*.fast[a,q]`, example: `fastq/*_001.fast[a,q]`, multiple_sep: `\";\"`. Glob pattern for matching the expected output files",
"help_text": "Type: List of `file`, required, default: `$id.$key.output_*.fast[a,q]`, example: `fastq/*_001.fast[a,q]`, multiple_sep: `\";\"`. Glob pattern for matching the expected output files.\nShould include `$output_dir`.\n"
,
"default": "$id.$key.output_*.fast[a,q]"
"default":"$id.$key.output_*.fast[a,q]"
}
@@ -652,7 +652,7 @@
"description": "Type: `boolean_true`, default: `false`. Output FASTA to standard output even on FASTQ input",
"help_text": "Type: `boolean_true`, default: `false`. Output FASTA to standard output even on FASTQ input.\n"
,
"default": "False"
"default":false
}
@@ -663,7 +663,7 @@
"description": "Type: `boolean_true`, default: `false`. Write information about each read and its adapter matches\ninto info",
"help_text": "Type: `boolean_true`, default: `false`. Write information about each read and its adapter matches\ninto info.txt in the output directory.\nSee the documentation for the file format.\n"
,
"default": "False"
"default":false
}
@@ -684,7 +684,7 @@
"description": "Type: `boolean_true`, default: `false`. Print debug information",
"help_text": "Type: `boolean_true`, default: `false`. Print debug information"
,
"default": "False"
"default":false
}

4
target/executable/eset/create_eset/.config.vsh.yaml
View File

@@ -220,8 +220,8 @@ build_info:
output: "target/executable/eset/create_eset"
executable: "target/executable/eset/create_eset/create_eset"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/eset/create_eset/create_eset
View File

@@ -488,9 +488,9 @@ remotes::install_url("https://cran.r-project.org/src/contrib/Archive/Seurat/Seur
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_eset"
LABEL org.opencontainers.image.created="2024-12-18T13:03:28Z"
LABEL org.opencontainers.image.created="2024-12-19T12:36:40Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
LABEL org.opencontainers.image.revision="e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/eset/create_fdata/.config.vsh.yaml
View File

@@ -177,8 +177,8 @@ build_info:
output: "target/executable/eset/create_fdata"
executable: "target/executable/eset/create_fdata/create_fdata"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/eset/create_fdata/create_fdata
View File

@@ -478,9 +478,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_fdata"
LABEL org.opencontainers.image.created="2024-12-18T13:03:30Z"
LABEL org.opencontainers.image.created="2024-12-19T12:36:42Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
LABEL org.opencontainers.image.revision="e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/eset/create_pdata/.config.vsh.yaml
View File

@@ -191,8 +191,8 @@ build_info:
output: "target/executable/eset/create_pdata"
executable: "target/executable/eset/create_pdata/create_pdata"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/eset/create_pdata/create_pdata
View File

@@ -488,9 +488,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_pdata"
LABEL org.opencontainers.image.created="2024-12-18T13:03:28Z"
LABEL org.opencontainers.image.created="2024-12-19T12:36:40Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
LABEL org.opencontainers.image.revision="e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
View File

@@ -148,8 +148,8 @@ build_info:
output: "target/executable/integration_test_components/htrnaseq/check_eset"
executable: "target/executable/integration_test_components/htrnaseq/check_eset/check_eset"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/integration_test_components/htrnaseq/check_eset/check_eset
View File

@@ -470,9 +470,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/htrnaseq check_eset"
LABEL org.opencontainers.image.created="2024-12-18T13:03:29Z"
LABEL org.opencontainers.image.created="2024-12-19T12:36:42Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
LABEL org.opencontainers.image.revision="e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/parallel_map/.config.vsh.yaml
View File

@@ -264,8 +264,8 @@ build_info:
output: "target/executable/parallel_map"
executable: "target/executable/parallel_map/parallel_map"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/parallel_map/parallel_map
View File

@@ -517,9 +517,9 @@ ENV STAR_BINARY=STAR
COPY STAR /usr/local/bin/$STAR_BINARY
LABEL org.opencontainers.image.authors="Dries Schaumont, Toni Verbeiren"
LABEL org.opencontainers.image.description="Companion container for running component parallel_map"
LABEL org.opencontainers.image.created="2024-12-18T13:03:28Z"
LABEL org.opencontainers.image.created="2024-12-19T12:36:41Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
LABEL org.opencontainers.image.revision="e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/report/create_report/.config.vsh.yaml
View File

@@ -201,8 +201,8 @@ build_info:
output: "target/executable/report/create_report"
executable: "target/executable/report/create_report/create_report"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/report/create_report/create_report
View File

@@ -476,9 +476,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component report create_report"
LABEL org.opencontainers.image.created="2024-12-18T13:03:29Z"
LABEL org.opencontainers.image.created="2024-12-19T12:36:41Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
LABEL org.opencontainers.image.revision="e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/stats/combine_star_logs/.config.vsh.yaml
View File

@@ -198,8 +198,8 @@ build_info:
output: "target/executable/stats/combine_star_logs"
executable: "target/executable/stats/combine_star_logs/combine_star_logs"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/stats/combine_star_logs/combine_star_logs
View File

@@ -490,9 +490,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component stats combine_star_logs"
LABEL org.opencontainers.image.created="2024-12-18T13:03:28Z"
LABEL org.opencontainers.image.created="2024-12-19T12:36:40Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
LABEL org.opencontainers.image.revision="e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/stats/generate_pool_statistics/.config.vsh.yaml
View File

@@ -182,8 +182,8 @@ build_info:
output: "target/executable/stats/generate_pool_statistics"
executable: "target/executable/stats/generate_pool_statistics/generate_pool_statistics"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/stats/generate_pool_statistics/generate_pool_statistics
View File

@@ -483,9 +483,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component stats generate_pool_statistics"
LABEL org.opencontainers.image.created="2024-12-18T13:03:27Z"
LABEL org.opencontainers.image.created="2024-12-19T12:36:40Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
LABEL org.opencontainers.image.revision="e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/stats/generate_well_statistics/.config.vsh.yaml
View File

@@ -262,8 +262,8 @@ build_info:
output: "target/executable/stats/generate_well_statistics"
executable: "target/executable/stats/generate_well_statistics/generate_well_statistics"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/stats/generate_well_statistics/generate_well_statistics
View File

@@ -520,9 +520,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component stats generate_well_statistics"
LABEL org.opencontainers.image.created="2024-12-18T13:03:28Z"
LABEL org.opencontainers.image.created="2024-12-19T12:36:41Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
LABEL org.opencontainers.image.revision="e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/nextflow/eset/create_eset/.config.vsh.yaml
View File

@@ -220,8 +220,8 @@ build_info:
output: "target/nextflow/eset/create_eset"
executable: "target/nextflow/eset/create_eset/main.nf"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/nextflow/eset/create_eset/main.nf
View File

@@ -3090,8 +3090,8 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/eset/create_eset",
"viash_version" : "0.9.0",
"git_commit" : "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582",
"git_remote" : "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
"git_commit" : "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790",
"git_remote" : "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",

4
target/nextflow/eset/create_fdata/.config.vsh.yaml
View File

@@ -177,8 +177,8 @@ build_info:
output: "target/nextflow/eset/create_fdata"
executable: "target/nextflow/eset/create_fdata/main.nf"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/nextflow/eset/create_fdata/main.nf
View File

@@ -3044,8 +3044,8 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/eset/create_fdata",
"viash_version" : "0.9.0",
"git_commit" : "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582",
"git_remote" : "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
"git_commit" : "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790",
"git_remote" : "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",

4
target/nextflow/eset/create_pdata/.config.vsh.yaml
View File

@@ -191,8 +191,8 @@ build_info:
output: "target/nextflow/eset/create_pdata"
executable: "target/nextflow/eset/create_pdata/main.nf"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/nextflow/eset/create_pdata/main.nf
View File

@@ -3058,8 +3058,8 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/eset/create_pdata",
"viash_version" : "0.9.0",
"git_commit" : "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582",
"git_remote" : "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
"git_commit" : "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790",
"git_remote" : "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",

4
target/nextflow/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
View File

@@ -148,8 +148,8 @@ build_info:
output: "target/nextflow/integration_test_components/htrnaseq/check_eset"
executable: "target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf
View File

@@ -2997,8 +2997,8 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/integration_test_components/htrnaseq/check_eset",
"viash_version" : "0.9.0",
"git_commit" : "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582",
"git_remote" : "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
"git_commit" : "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790",
"git_remote" : "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",

4
target/nextflow/parallel_map/.config.vsh.yaml
View File

@@ -264,8 +264,8 @@ build_info:
output: "target/nextflow/parallel_map"
executable: "target/nextflow/parallel_map/main.nf"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/nextflow/parallel_map/main.nf
View File

@@ -3148,8 +3148,8 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/parallel_map",
"viash_version" : "0.9.0",
"git_commit" : "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582",
"git_remote" : "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
"git_commit" : "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790",
"git_remote" : "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",

4
target/nextflow/report/create_report/.config.vsh.yaml
View File

@@ -201,8 +201,8 @@ build_info:
output: "target/nextflow/report/create_report"
executable: "target/nextflow/report/create_report/main.nf"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/nextflow/report/create_report/main.nf
View File

@@ -3077,8 +3077,8 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/report/create_report",
"viash_version" : "0.9.0",
"git_commit" : "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582",
"git_remote" : "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
"git_commit" : "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790",
"git_remote" : "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",

4
target/nextflow/stats/combine_star_logs/.config.vsh.yaml
View File

@@ -198,8 +198,8 @@ build_info:
output: "target/nextflow/stats/combine_star_logs"
executable: "target/nextflow/stats/combine_star_logs/main.nf"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/nextflow/stats/combine_star_logs/main.nf
View File

@@ -3060,8 +3060,8 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/stats/combine_star_logs",
"viash_version" : "0.9.0",
"git_commit" : "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582",
"git_remote" : "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
"git_commit" : "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790",
"git_remote" : "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",

4
target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml
View File

@@ -182,8 +182,8 @@ build_info:
output: "target/nextflow/stats/generate_pool_statistics"
executable: "target/nextflow/stats/generate_pool_statistics/main.nf"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/nextflow/stats/generate_pool_statistics/main.nf
View File

@@ -3044,8 +3044,8 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/stats/generate_pool_statistics",
"viash_version" : "0.9.0",
"git_commit" : "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582",
"git_remote" : "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
"git_commit" : "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790",
"git_remote" : "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",

4
target/nextflow/stats/generate_well_statistics/.config.vsh.yaml
View File

@@ -262,8 +262,8 @@ build_info:
output: "target/nextflow/stats/generate_well_statistics"
executable: "target/nextflow/stats/generate_well_statistics/main.nf"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/nextflow/stats/generate_well_statistics/main.nf
View File

@@ -3135,8 +3135,8 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/stats/generate_well_statistics",
"viash_version" : "0.9.0",
"git_commit" : "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582",
"git_remote" : "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
"git_commit" : "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790",
"git_remote" : "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",

4
target/nextflow/workflows/htrnaseq/.config.vsh.yaml
View File

@@ -308,8 +308,8 @@ build_info:
output: "target/nextflow/workflows/htrnaseq"
executable: "target/nextflow/workflows/htrnaseq/main.nf"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
dependencies:
- "target/nextflow/stats/combine_star_logs"
- "target/nextflow/stats/generate_pool_statistics"

4
target/nextflow/workflows/htrnaseq/main.nf
View File

@@ -3210,8 +3210,8 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/workflows/htrnaseq",
"viash_version" : "0.9.0",
"git_commit" : "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582",
"git_remote" : "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
"git_commit" : "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790",
"git_remote" : "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",

4
target/nextflow/workflows/parallel_map_wf/.config.vsh.yaml
View File

@@ -175,8 +175,8 @@ build_info:
output: "target/nextflow/workflows/parallel_map_wf"
executable: "target/nextflow/workflows/parallel_map_wf/main.nf"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
dependencies:
- "target/nextflow/parallel_map"
- "target/nextflow/workflows/utils/groupWells"

4
target/nextflow/workflows/parallel_map_wf/main.nf
View File

@@ -3028,8 +3028,8 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/workflows/parallel_map_wf",
"viash_version" : "0.9.0",
"git_commit" : "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582",
"git_remote" : "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
"git_commit" : "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790",
"git_remote" : "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",

4
target/nextflow/workflows/utils/groupWells/.config.vsh.yaml
View File

@@ -185,8 +185,8 @@ build_info:
output: "target/nextflow/workflows/utils/groupWells"
executable: "target/nextflow/workflows/utils/groupWells/main.nf"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/nextflow/workflows/utils/groupWells/main.nf
View File

@@ -3039,8 +3039,8 @@ meta = [
"engine" : "native",
"output" : "target/nextflow/workflows/utils/groupWells",
"viash_version" : "0.9.0",
"git_commit" : "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582",
"git_remote" : "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
"git_commit" : "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790",
"git_remote" : "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",

10
target/nextflow/workflows/well_demultiplex/.config.vsh.yaml
View File

@@ -161,7 +161,7 @@ dependencies:
repository:
type: "vsh"
repo: "biobox"
tag: "v0.2.0"
tag: "v0.3.0"
- name: "concat_text"
repository:
type: "vsh"
@@ -171,7 +171,7 @@ repositories:
- type: "vsh"
name: "bb"
repo: "biobox"
tag: "v0.2.0"
tag: "v0.3.0"
- type: "vsh"
name: "cb"
repo: "craftbox"
@@ -255,10 +255,10 @@ build_info:
output: "target/nextflow/workflows/well_demultiplex"
executable: "target/nextflow/workflows/well_demultiplex/main.nf"
viash_version: "0.9.0"
git_commit: "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582"
git_remote: "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
git_commit: "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790"
git_remote: "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
dependencies:
- "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/cutadapt"
- "target/dependencies/vsh/vsh/biobox/v0.3.0/nextflow/cutadapt"
- "target/dependencies/vsh/vsh/craftbox/v0.1.0/nextflow/concat_text"
package_config:
name: "htrnaseq"

10
target/nextflow/workflows/well_demultiplex/main.nf
View File

@@ -3016,7 +3016,7 @@ meta = [
"repository" : {
"type" : "vsh",
"repo" : "biobox",
"tag" : "v0.2.0"
"tag" : "v0.3.0"
}
},
{
@@ -3033,7 +3033,7 @@ meta = [
"type" : "vsh",
"name" : "bb",
"repo" : "biobox",
"tag" : "v0.2.0"
"tag" : "v0.3.0"
},
{
"type" : "vsh",
@@ -3134,8 +3134,8 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/workflows/well_demultiplex",
"viash_version" : "0.9.0",
"git_commit" : "f6cf9bf06a6b2ff974abc1a20c6fcd4cd413a582",
"git_remote" : "https://x-access-token:ghs_RDdNKgc3SasBNW6yAiKUCtvC07L9Tt3Ov5Cj@github.com/viash-hub/htrnaseq"
"git_commit" : "e3a7de40e8c1f809e7a3e2ca1e34e2f7150d0790",
"git_remote" : "https://x-access-token:ghs_nFNHagvyTq2ZDrbyQ3KbmmqZYpur9V22CgJA@github.com/viash-hub/htrnaseq"
},
"package_config" : {
"name" : "htrnaseq",
@@ -3178,7 +3178,7 @@ meta = [
// resolve dependencies dependencies (if any)
meta["root_dir"] = getRootDir()
include { cutadapt } from "${meta.root_dir}/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/cutadapt/main.nf"
include { cutadapt } from "${meta.root_dir}/dependencies/vsh/vsh/biobox/v0.3.0/nextflow/cutadapt/main.nf"
include { concat_text } from "${meta.root_dir}/dependencies/vsh/vsh/craftbox/v0.1.0/nextflow/concat_text/main.nf"
// inner workflow