Build branch htrnaseq/v0.14 with version v0.14.6 to htrnaseq on branch v0.14 (9346c55)

Build pipeline: viash-hub.htrnaseq.v0.14.6-q286w Source commit: 9346c55e3f Source message: Bump version to v0.14.6
2026-02-23 14:33:34 +00:00
125 changed files with 653 additions and 453 deletions
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,3 +1,9 @@
+# htrnaseq v0.14.6
+
+## Minor changes
+
+* Update `utils/save_params` to capture sub-workflow names and versions alongside input parameters (PR #95).
+
 # htrnaseq v0.14.5

 ## Bug fixes
--- a/_viash.yaml
+++ b/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/src/utils/save_params/config.vsh.yaml
+++ b/src/utils/save_params/config.vsh.yaml
@@ -16,6 +16,11 @@ argument_groups:
          base64 encoded yaml containing the state
        type: string
        required: true
+      - name: "--workflow_analysis"
+        description: |
+          Base64 encoded YAML containing workflow analysis information (name and version for all workflows)
+        type: string
+        required: false
    
  - name: Outputs
    arguments:
@@ -23,9 +28,9 @@ argument_groups:
        description: |
          The output YAML file
        type: file
+        default: "params.yaml"
        direction: output
        required: true
-        example: "output.yaml"

 resources:
  - type: python_script
--- a/src/utils/save_params/script.py
+++ b/src/utils/save_params/script.py
@@ -6,14 +6,23 @@ import base64
 par = {
    "id": "sample_one",
    "params_yaml": "cGFyYW1zX3lhbWw6IHt9Cg==",
+    "workflow_analysis": "LSBuYW1lOiBhbm5vdFZpc1FDX3dmCiAgdmVyc2lvbjogMC4xLjAK",
    "output": "output.yaml"
 }
 ## VIASH END

+# Custom representer to preserve dict order in YAML output
+# Note: Python 3.7+ dicts maintain insertion order by default
+def represent_dict(dumper, data):
+    return dumper.represent_dict(data.items())
+
 class Dumper(yaml.Dumper):
    def increase_indent(self, flow=False, indentless=False):
        return super(Dumper, self).increase_indent(flow, False)

+# Register the representer for dicts to preserve order
+Dumper.add_representer(dict, represent_dict)
+
 def decode_params_yaml(encoded_yaml):
    yaml_bytes = base64.b64decode(encoded_yaml)
    yaml_string = yaml_bytes.decode('utf-8')
@@ -23,6 +32,24 @@ def decode_params_yaml(encoded_yaml):

 params = decode_params_yaml(par['params_yaml'])

-with open(par["output"], 'w') as f:
-    yaml.dump(params, f, default_flow_style=False, Dumper=Dumper)
+# Build the output structure
+output_data = params  # params is a list of states
+
+# Add workflow analysis information if provided
+if par.get('workflow_analysis'):
+    try:
+        analysis_bytes = base64.b64decode(par['workflow_analysis'])
+        analysis_string = analysis_bytes.decode('utf-8')
+        analysis = yaml.safe_load(analysis_string)
+        # Since params is a list, create a dict wrapper
+        output_data = {
+            'params': params,
+            'analysis': analysis
+        }
+    except (TypeError, ValueError) as e:
+        e.add_note("Could not parse workflow_analysis YAML.")
+        raise
+
+with open(par["output"], 'w') as f:
+    yaml.dump(output_data, f, default_flow_style=False, Dumper=Dumper)

--- a/src/workflows/runner/main.nf
+++ b/src/workflows/runner/main.nf
@@ -6,8 +6,6 @@ def date = new Date().format('yyyyMMdd_hhmmss')
 session = nextflow.Nextflow.getSession()
 final service = session.publishDirExecutorService()

-
-
 def viash_config = java.nio.file.Paths.get("${moduleDir}/_viash.yaml")
 def version = get_version(viash_config)

@@ -21,6 +19,33 @@ def regex_trailing_slashes = ~/\/+$/
 def results_publish_dir = params.results_publish_dir - regex_trailing_slashes
 def fastq_publish_dir = params.fastq_publish_dir - regex_trailing_slashes

+def get_workflow_analysis() {
+  def dependencies = []
+  
+  if (meta.config.dependencies) {
+    meta.config.dependencies.each { dep_spec ->
+      def dependency_name = dep_spec.alias ? dep_spec.alias : dep_spec.name
+      def dependency_var = file(dependency_name).name
+      def dependency = binding.getVariable(dependency_var)
+        
+      def dep_entry = new LinkedHashMap()
+      dep_entry.name = dependency.config.name ?: "unknown_name"
+      dep_entry.version = dependency.config.version ?: "unknown_version"
+      dependencies << dep_entry
+    }
+  }
+  
+  // Build main analysis entry with dependencies using LinkedHashMap for order
+  def main_entry = new LinkedHashMap()
+  main_entry.name = meta.config.name ?: "unknown_name"
+  main_entry.version = meta.config.version ?: "unknown_version"
+  main_entry.dependencies = dependencies
+  
+  def analysis = [main_entry]
+  
+  println("Analysis workflows: ${analysis}")
+  return analysis
+}

 /* 
 This is a utility workflow that gathers the input events and saves their state to a YAML file.
@@ -44,7 +69,6 @@ workflow save_params_wf {
      | save_params.run(
        key: "save_params_runner",
        fromState: {id, state ->
-
          def convertPaths
          convertPaths = { value ->
            if (value instanceof java.nio.file.Path)
@@ -64,13 +88,19 @@ workflow save_params_wf {
          def yamlString = yaml.dump(convertedState)
          def encodedYaml = yamlString.bytes.encodeBase64().toString()
          
+          def yaml_builder = new org.yaml.snakeyaml.Yaml()
+          def analysis_yaml = yaml_builder.dump(get_workflow_analysis())
+          def encoded_analysis = analysis_yaml.bytes.encodeBase64().toString()
+          
          return [
            "id": id,
            "params_yaml": encodedYaml,
-            "output": state.run_params
+            "workflow_analysis": encoded_analysis
          ]
        },
-        toState: ["run_params": "output"]
+        toState: { id, output, state ->
+          state + [ run_params: output.output ]
+        }
      )

  emit:
--- a/target/_private/nextflow/utils/listInputDir/.config.vsh.yaml
+++ b/target/_private/nextflow/utils/listInputDir/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "listInputDir"
 namespace: "utils"
-version: "v0.14.5"
+version: "v0.14.6"
 argument_groups:
 - name: "Arguments"
  arguments:
@@ -169,11 +169,11 @@ build_info:
  output: "target/_private/nextflow/utils/listInputDir"
  executable: "target/_private/nextflow/utils/listInputDir/main.nf"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -205,7 +205,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/_private/nextflow/utils/listInputDir/_viash.yaml
+++ b/target/_private/nextflow/utils/listInputDir/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/_private/nextflow/utils/listInputDir/main.nf
+++ b/target/_private/nextflow/utils/listInputDir/main.nf
@@ -1,4 +1,4 @@
-// listInputDir v0.14.5
+// listInputDir v0.14.6
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3032,7 +3032,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "listInputDir",
  "namespace" : "utils",
-  "version" : "v0.14.5",
+  "version" : "v0.14.6",
  "argument_groups" : [
    {
      "name" : "Arguments",
@@ -3236,12 +3236,12 @@ meta = [
    "engine" : "native|native",
    "output" : "target/_private/nextflow/utils/listInputDir",
    "viash_version" : "0.9.4",
-    "git_commit" : "9d5018b257513e527f13faf524f1e9e6df01c465",
+    "git_commit" : "9346c55e3f894994935b0928759dca9e56866d37",
    "git_remote" : "https://github.com/viash-hub/htrnaseq"
  },
  "package_config" : {
    "name" : "htrnaseq",
-    "version" : "v0.14.5",
+    "version" : "v0.14.6",
    "summary" : "A workflow for high-throughput RNA-seq data analyses.\n",
    "description" : "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n",
    "info" : {
@@ -3259,7 +3259,7 @@ meta = [
      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+      ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
    ],
    "keywords" : [
      "bioinformatics",
--- a/target/_private/nextflow/utils/listInputDir/nextflow.config
+++ b/target/_private/nextflow/utils/listInputDir/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'utils/listInputDir'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.14.5'
+  version = 'v0.14.6'
  description = 'List the contents of a directory and parse contained fastq files'
 }

--- a/target/_private/nextflow/workflows/well_fastqs_to_esets/.config.vsh.yaml
+++ b/target/_private/nextflow/workflows/well_fastqs_to_esets/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "well_fastqs_to_esets"
 namespace: "workflows"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -323,7 +323,7 @@ build_info:
  output: "target/_private/nextflow/workflows/well_fastqs_to_esets"
  executable: "target/_private/nextflow/workflows/well_fastqs_to_esets/main.nf"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
  dependencies:
  - "target/nextflow/stats/combine_star_logs"
@@ -340,7 +340,7 @@ build_info:
  - "target/nextflow/utils/save_params"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -372,7 +372,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/_private/nextflow/workflows/well_fastqs_to_esets/_viash.yaml
+++ b/target/_private/nextflow/workflows/well_fastqs_to_esets/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/_private/nextflow/workflows/well_fastqs_to_esets/main.nf
+++ b/target/_private/nextflow/workflows/well_fastqs_to_esets/main.nf
@@ -1,4 +1,4 @@
-// well_fastqs_to_esets v0.14.5
+// well_fastqs_to_esets v0.14.6
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "well_fastqs_to_esets",
  "namespace" : "workflows",
-  "version" : "v0.14.5",
+  "version" : "v0.14.6",
  "authors" : [
    {
      "name" : "Dries Schaumont",
@@ -3455,12 +3455,12 @@ meta = [
    "engine" : "native|native",
    "output" : "target/_private/nextflow/workflows/well_fastqs_to_esets",
    "viash_version" : "0.9.4",
-    "git_commit" : "9d5018b257513e527f13faf524f1e9e6df01c465",
+    "git_commit" : "9346c55e3f894994935b0928759dca9e56866d37",
    "git_remote" : "https://github.com/viash-hub/htrnaseq"
  },
  "package_config" : {
    "name" : "htrnaseq",
-    "version" : "v0.14.5",
+    "version" : "v0.14.6",
    "summary" : "A workflow for high-throughput RNA-seq data analyses.\n",
    "description" : "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n",
    "info" : {
@@ -3478,7 +3478,7 @@ meta = [
      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+      ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
    ],
    "keywords" : [
      "bioinformatics",
--- a/target/_private/nextflow/workflows/well_fastqs_to_esets/nextflow.config
+++ b/target/_private/nextflow/workflows/well_fastqs_to_esets/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'workflows/well_fastqs_to_esets'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.14.5'
+  version = 'v0.14.6'
  description = 'Map a list of FASTQ files (one for each well) to a reference genome and generate count matrices.\nSometimes counts from different FASTQ files need to be concatenated. This is done bases on the sample_id:\nif the sample ID of the two plates are identical, the FASTQ files will we joined _before_ mapping.\n'
  author = 'Dries Schaumont'
 }
--- a/target/executable/eset/create_eset/.config.vsh.yaml
+++ b/target/executable/eset/create_eset/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "create_eset"
 namespace: "eset"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -178,7 +178,7 @@ engines:
  id: "docker"
  image: "rocker/r2u:24.04"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "r"
@@ -206,11 +206,11 @@ build_info:
  output: "target/executable/eset/create_eset"
  executable: "target/executable/eset/create_eset/create_eset"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -242,7 +242,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/executable/eset/create_eset/_viash.yaml
+++ b/target/executable/eset/create_eset/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/executable/eset/create_eset/create_eset
+++ b/target/executable/eset/create_eset/create_eset
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# create_eset v0.14.5
+# create_eset v0.14.6
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -456,10 +456,10 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR

 LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component eset create_eset"
-LABEL org.opencontainers.image.created="2025-12-12T15:31:35Z"
+LABEL org.opencontainers.image.created="2026-02-23T13:37:11Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="9d5018b257513e527f13faf524f1e9e6df01c465"
-LABEL org.opencontainers.image.version="v0.14.5"
+LABEL org.opencontainers.image.revision="9346c55e3f894994935b0928759dca9e56866d37"
+LABEL org.opencontainers.image.version="v0.14.6"

 VIASHDOCKER
  fi
@@ -576,7 +576,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "create_eset v0.14.5"
+  echo "create_eset v0.14.6"
  echo ""
  echo "Arguments:"
  echo "    --pDataFile"
@@ -642,7 +642,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "create_eset v0.14.5"
+            echo "create_eset v0.14.6"
            exit
            ;;
        --pDataFile)
@@ -794,7 +794,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_eset:v0.14.5'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_eset:v0.14.6'
  fi

  # print dockerfile
--- a/target/executable/eset/create_fdata/.config.vsh.yaml
+++ b/target/executable/eset/create_fdata/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "create_fdata"
 namespace: "eset"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -154,7 +154,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -183,11 +183,11 @@ build_info:
  output: "target/executable/eset/create_fdata"
  executable: "target/executable/eset/create_fdata/create_fdata"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -219,7 +219,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/executable/eset/create_fdata/_viash.yaml
+++ b/target/executable/eset/create_fdata/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/executable/eset/create_fdata/create_fdata
+++ b/target/executable/eset/create_fdata/create_fdata
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# create_fdata v0.14.5
+# create_fdata v0.14.6
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -458,10 +458,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component eset create_fdata"
-LABEL org.opencontainers.image.created="2025-12-12T15:31:35Z"
+LABEL org.opencontainers.image.created="2026-02-23T13:37:11Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="9d5018b257513e527f13faf524f1e9e6df01c465"
-LABEL org.opencontainers.image.version="v0.14.5"
+LABEL org.opencontainers.image.revision="9346c55e3f894994935b0928759dca9e56866d37"
+LABEL org.opencontainers.image.version="v0.14.6"

 VIASHDOCKER
  fi
@@ -578,7 +578,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "create_fdata v0.14.5"
+  echo "create_fdata v0.14.6"
  echo ""
  echo "Create a fdata file"
  echo ""
@@ -643,7 +643,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "create_fdata v0.14.5"
+            echo "create_fdata v0.14.6"
            exit
            ;;
        --gtf)
@@ -756,7 +756,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_fdata:v0.14.5'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_fdata:v0.14.6'
  fi

  # print dockerfile
--- a/target/executable/eset/create_pdata/.config.vsh.yaml
+++ b/target/executable/eset/create_pdata/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "create_pdata"
 namespace: "eset"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -168,7 +168,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -197,11 +197,11 @@ build_info:
  output: "target/executable/eset/create_pdata"
  executable: "target/executable/eset/create_pdata/create_pdata"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -233,7 +233,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/executable/eset/create_pdata/_viash.yaml
+++ b/target/executable/eset/create_pdata/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/executable/eset/create_pdata/create_pdata
+++ b/target/executable/eset/create_pdata/create_pdata
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# create_pdata v0.14.5
+# create_pdata v0.14.6
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -458,10 +458,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component eset create_pdata"
-LABEL org.opencontainers.image.created="2025-12-12T15:31:35Z"
+LABEL org.opencontainers.image.created="2026-02-23T13:37:11Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="9d5018b257513e527f13faf524f1e9e6df01c465"
-LABEL org.opencontainers.image.version="v0.14.5"
+LABEL org.opencontainers.image.revision="9346c55e3f894994935b0928759dca9e56866d37"
+LABEL org.opencontainers.image.version="v0.14.6"

 VIASHDOCKER
  fi
@@ -578,7 +578,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "create_pdata v0.14.5"
+  echo "create_pdata v0.14.6"
  echo ""
  echo "Create a pdata file by combining the mapping statistics"
  echo ""
@@ -653,7 +653,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "create_pdata v0.14.5"
+            echo "create_pdata v0.14.6"
            exit
            ;;
        --star_stats_file)
@@ -777,7 +777,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_pdata:v0.14.5'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_pdata:v0.14.6'
  fi

  # print dockerfile
--- a/target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
+++ b/target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "check_eset"
 namespace: "integration_test_components/htrnaseq"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -134,7 +134,7 @@ engines:
  id: "docker"
  image: "bioconductor/bioconductor_docker:3.19"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "r"
@@ -155,11 +155,11 @@ build_info:
  output: "target/executable/integration_test_components/htrnaseq/check_eset"
  executable: "target/executable/integration_test_components/htrnaseq/check_eset/check_eset"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -191,7 +191,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/executable/integration_test_components/htrnaseq/check_eset/_viash.yaml
+++ b/target/executable/integration_test_components/htrnaseq/check_eset/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/executable/integration_test_components/htrnaseq/check_eset/check_eset
+++ b/target/executable/integration_test_components/htrnaseq/check_eset/check_eset
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# check_eset v0.14.5
+# check_eset v0.14.6
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -455,10 +455,10 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR

 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/htrnaseq check_eset"
-LABEL org.opencontainers.image.created="2025-12-12T15:31:36Z"
+LABEL org.opencontainers.image.created="2026-02-23T13:37:11Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="9d5018b257513e527f13faf524f1e9e6df01c465"
-LABEL org.opencontainers.image.version="v0.14.5"
+LABEL org.opencontainers.image.revision="9346c55e3f894994935b0928759dca9e56866d37"
+LABEL org.opencontainers.image.version="v0.14.6"

 VIASHDOCKER
  fi
@@ -575,7 +575,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "check_eset v0.14.5"
+  echo "check_eset v0.14.6"
  echo ""
  echo "This component test the ExpressionSet object as output by the main pipeline."
  echo ""
@@ -635,7 +635,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "check_eset v0.14.5"
+            echo "check_eset v0.14.6"
            exit
            ;;
        --eset)
@@ -754,7 +754,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/integration_test_components/htrnaseq/check_eset:v0.14.5'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/integration_test_components/htrnaseq/check_eset:v0.14.6'
  fi

  # print dockerfile
--- a/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml
+++ b/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "check_cutadapt_output"
 namespace: "integration_test_components/well_demultiplexing"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -141,7 +141,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -164,11 +164,11 @@ build_info:
  output: "target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output"
  executable: "target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -200,7 +200,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/_viash.yaml
+++ b/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output
+++ b/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# check_cutadapt_output v0.14.5
+# check_cutadapt_output v0.14.6
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -457,10 +457,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/well_demultiplexing check_cutadapt_output"
-LABEL org.opencontainers.image.created="2025-12-12T15:31:36Z"
+LABEL org.opencontainers.image.created="2026-02-23T13:37:11Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="9d5018b257513e527f13faf524f1e9e6df01c465"
-LABEL org.opencontainers.image.version="v0.14.5"
+LABEL org.opencontainers.image.revision="9346c55e3f894994935b0928759dca9e56866d37"
+LABEL org.opencontainers.image.version="v0.14.6"

 VIASHDOCKER
  fi
@@ -577,7 +577,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "check_cutadapt_output v0.14.5"
+  echo "check_cutadapt_output v0.14.6"
  echo ""
  echo "This component test the cutadapt output from the well_demultiplex subworkflow."
  echo ""
@@ -641,7 +641,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "check_cutadapt_output v0.14.5"
+            echo "check_cutadapt_output v0.14.6"
            exit
            ;;
        --fastq_r1)
@@ -783,7 +783,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/integration_test_components/well_demultiplexing/check_cutadapt_output:v0.14.5'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/integration_test_components/well_demultiplexing/check_cutadapt_output:v0.14.6'
  fi

  # print dockerfile
--- a/target/executable/io/publish_fastqs/.config.vsh.yaml
+++ b/target/executable/io/publish_fastqs/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "publish_fastqs"
 namespace: "io"
-version: "v0.14.5"
+version: "v0.14.6"
 argument_groups:
 - name: "Input arguments"
  arguments:
@@ -121,7 +121,7 @@ engines:
  id: "docker"
  image: "debian:stable-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -139,11 +139,11 @@ build_info:
  output: "target/executable/io/publish_fastqs"
  executable: "target/executable/io/publish_fastqs/publish_fastqs"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -175,7 +175,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/executable/io/publish_fastqs/_viash.yaml
+++ b/target/executable/io/publish_fastqs/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/executable/io/publish_fastqs/publish_fastqs
+++ b/target/executable/io/publish_fastqs/publish_fastqs
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# publish_fastqs v0.14.5
+# publish_fastqs v0.14.6
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -450,10 +450,10 @@ RUN apt-get update && \
  rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.description="Companion container for running component io publish_fastqs"
-LABEL org.opencontainers.image.created="2025-12-12T15:31:36Z"
+LABEL org.opencontainers.image.created="2026-02-23T13:37:12Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="9d5018b257513e527f13faf524f1e9e6df01c465"
-LABEL org.opencontainers.image.version="v0.14.5"
+LABEL org.opencontainers.image.revision="9346c55e3f894994935b0928759dca9e56866d37"
+LABEL org.opencontainers.image.version="v0.14.6"

 VIASHDOCKER
  fi
@@ -570,7 +570,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "publish_fastqs v0.14.5"
+  echo "publish_fastqs v0.14.6"
  echo ""
  echo "Publish the fastq files per well"
  echo ""
@@ -631,7 +631,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "publish_fastqs v0.14.5"
+            echo "publish_fastqs v0.14.6"
            exit
            ;;
        --input)
@@ -750,7 +750,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/io/publish_fastqs:v0.14.5'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/io/publish_fastqs:v0.14.6'
  fi

  # print dockerfile
--- a/target/executable/io/publish_results/.config.vsh.yaml
+++ b/target/executable/io/publish_results/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "publish_results"
 namespace: "io"
-version: "v0.14.5"
+version: "v0.14.6"
 argument_groups:
 - name: "Input arguments"
  arguments:
@@ -261,7 +261,7 @@ engines:
  id: "docker"
  image: "debian:stable-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -279,11 +279,11 @@ build_info:
  output: "target/executable/io/publish_results"
  executable: "target/executable/io/publish_results/publish_results"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -315,7 +315,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/executable/io/publish_results/_viash.yaml
+++ b/target/executable/io/publish_results/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/executable/io/publish_results/publish_results
+++ b/target/executable/io/publish_results/publish_results
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# publish_results v0.14.5
+# publish_results v0.14.6
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -450,10 +450,10 @@ RUN apt-get update && \
  rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.description="Companion container for running component io publish_results"
-LABEL org.opencontainers.image.created="2025-12-12T15:31:36Z"
+LABEL org.opencontainers.image.created="2026-02-23T13:37:12Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="9d5018b257513e527f13faf524f1e9e6df01c465"
-LABEL org.opencontainers.image.version="v0.14.5"
+LABEL org.opencontainers.image.revision="9346c55e3f894994935b0928759dca9e56866d37"
+LABEL org.opencontainers.image.version="v0.14.6"

 VIASHDOCKER
  fi
@@ -570,7 +570,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "publish_results v0.14.5"
+  echo "publish_results v0.14.6"
  echo ""
  echo "Publish the results"
  echo ""
@@ -683,7 +683,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "publish_results v0.14.5"
+            echo "publish_results v0.14.6"
            exit
            ;;
        --star_output)
@@ -986,7 +986,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/io/publish_results:v0.14.5'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/io/publish_results:v0.14.6'
  fi

  # print dockerfile
--- a/target/executable/parallel_map/.config.vsh.yaml
+++ b/target/executable/parallel_map/.config.vsh.yaml
@@ -1,5 +1,5 @@
 name: "parallel_map"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -248,7 +248,7 @@ engines:
  id: "docker"
  image: "debian:stable-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -285,11 +285,11 @@ build_info:
  output: "target/executable/parallel_map"
  executable: "target/executable/parallel_map/parallel_map"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -321,7 +321,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/executable/parallel_map/_viash.yaml
+++ b/target/executable/parallel_map/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/executable/parallel_map/parallel_map
+++ b/target/executable/parallel_map/parallel_map
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# parallel_map v0.14.5
+# parallel_map v0.14.6
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -461,10 +461,10 @@ ENV STAR_BINARY=STAR
 COPY STAR /usr/local/bin/$STAR_BINARY
 LABEL org.opencontainers.image.authors="Dries Schaumont, Toni Verbeiren"
 LABEL org.opencontainers.image.description="Companion container for running component parallel_map"
-LABEL org.opencontainers.image.created="2025-12-12T15:31:37Z"
+LABEL org.opencontainers.image.created="2026-02-23T13:37:11Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="9d5018b257513e527f13faf524f1e9e6df01c465"
-LABEL org.opencontainers.image.version="v0.14.5"
+LABEL org.opencontainers.image.revision="9346c55e3f894994935b0928759dca9e56866d37"
+LABEL org.opencontainers.image.version="v0.14.6"

 VIASHDOCKER
  fi
@@ -581,7 +581,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "parallel_map v0.14.5"
+  echo "parallel_map v0.14.6"
  echo ""
  echo "Map wells in batch, using STAR"
  echo "Spliced Transcripts Alignment to a Reference (C) Alexander Dobin"
@@ -705,7 +705,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "parallel_map v0.14.5"
+            echo "parallel_map v0.14.6"
            exit
            ;;
        --input_r1)
@@ -907,7 +907,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/parallel_map:v0.14.5'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/parallel_map:v0.14.6'
  fi

  # print dockerfile
--- a/target/executable/report/create_report/.config.vsh.yaml
+++ b/target/executable/report/create_report/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "create_report"
 namespace: "report"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -168,7 +168,7 @@ engines:
  id: "docker"
  image: "rocker/r2u:24.04"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -225,11 +225,11 @@ build_info:
  output: "target/executable/report/create_report"
  executable: "target/executable/report/create_report/create_report"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -261,7 +261,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/executable/report/create_report/_viash.yaml
+++ b/target/executable/report/create_report/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/executable/report/create_report/create_report
+++ b/target/executable/report/create_report/create_report
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# create_report v0.14.5
+# create_report v0.14.6
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -465,10 +465,10 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR

 LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component report create_report"
-LABEL org.opencontainers.image.created="2025-12-12T15:31:34Z"
+LABEL org.opencontainers.image.created="2026-02-23T13:37:10Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="9d5018b257513e527f13faf524f1e9e6df01c465"
-LABEL org.opencontainers.image.version="v0.14.5"
+LABEL org.opencontainers.image.revision="9346c55e3f894994935b0928759dca9e56866d37"
+LABEL org.opencontainers.image.version="v0.14.6"

 VIASHDOCKER
  fi
@@ -585,7 +585,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "create_report v0.14.5"
+  echo "create_report v0.14.6"
  echo ""
  echo "Create a basic QC report in HTML format based on a number of esets."
  echo ""
@@ -647,7 +647,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "create_report v0.14.5"
+            echo "create_report v0.14.6"
            exit
            ;;
        --eset)
@@ -777,7 +777,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/report/create_report:v0.14.5'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/report/create_report:v0.14.6'
  fi

  # print dockerfile
--- a/target/executable/stats/combine_star_logs/.config.vsh.yaml
+++ b/target/executable/stats/combine_star_logs/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "combine_star_logs"
 namespace: "stats"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -175,7 +175,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -204,11 +204,11 @@ build_info:
  output: "target/executable/stats/combine_star_logs"
  executable: "target/executable/stats/combine_star_logs/combine_star_logs"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -240,7 +240,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/executable/stats/combine_star_logs/_viash.yaml
+++ b/target/executable/stats/combine_star_logs/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/executable/stats/combine_star_logs/combine_star_logs
+++ b/target/executable/stats/combine_star_logs/combine_star_logs
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# combine_star_logs v0.14.5
+# combine_star_logs v0.14.6
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -457,10 +457,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component stats combine_star_logs"
-LABEL org.opencontainers.image.created="2025-12-12T15:31:34Z"
+LABEL org.opencontainers.image.created="2026-02-23T13:37:10Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="9d5018b257513e527f13faf524f1e9e6df01c465"
-LABEL org.opencontainers.image.version="v0.14.5"
+LABEL org.opencontainers.image.revision="9346c55e3f894994935b0928759dca9e56866d37"
+LABEL org.opencontainers.image.version="v0.14.6"

 VIASHDOCKER
  fi
@@ -577,7 +577,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "combine_star_logs v0.14.5"
+  echo "combine_star_logs v0.14.6"
  echo ""
  echo "Arguments:"
  echo "    --barcodes"
@@ -655,7 +655,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "combine_star_logs v0.14.5"
+            echo "combine_star_logs v0.14.6"
            exit
            ;;
        --barcodes)
@@ -825,7 +825,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/combine_star_logs:v0.14.5'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/combine_star_logs:v0.14.6'
  fi

  # print dockerfile
--- a/target/executable/stats/generate_pool_statistics/.config.vsh.yaml
+++ b/target/executable/stats/generate_pool_statistics/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "generate_pool_statistics"
 namespace: "stats"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -159,7 +159,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -188,11 +188,11 @@ build_info:
  output: "target/executable/stats/generate_pool_statistics"
  executable: "target/executable/stats/generate_pool_statistics/generate_pool_statistics"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -224,7 +224,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/executable/stats/generate_pool_statistics/_viash.yaml
+++ b/target/executable/stats/generate_pool_statistics/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/executable/stats/generate_pool_statistics/generate_pool_statistics
+++ b/target/executable/stats/generate_pool_statistics/generate_pool_statistics
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# generate_pool_statistics v0.14.5
+# generate_pool_statistics v0.14.6
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -458,10 +458,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component stats generate_pool_statistics"
-LABEL org.opencontainers.image.created="2025-12-12T15:31:36Z"
+LABEL org.opencontainers.image.created="2026-02-23T13:37:10Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="9d5018b257513e527f13faf524f1e9e6df01c465"
-LABEL org.opencontainers.image.version="v0.14.5"
+LABEL org.opencontainers.image.revision="9346c55e3f894994935b0928759dca9e56866d37"
+LABEL org.opencontainers.image.version="v0.14.6"

 VIASHDOCKER
  fi
@@ -578,7 +578,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "generate_pool_statistics v0.14.5"
+  echo "generate_pool_statistics v0.14.6"
  echo ""
  echo "Arguments:"
  echo "    --nrReadsNrGenesPerChrom"
@@ -648,7 +648,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "generate_pool_statistics v0.14.5"
+            echo "generate_pool_statistics v0.14.6"
            exit
            ;;
        --nrReadsNrGenesPerChrom)
@@ -767,7 +767,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/generate_pool_statistics:v0.14.5'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/generate_pool_statistics:v0.14.6'
  fi

  # print dockerfile
--- a/target/executable/stats/generate_well_statistics/.config.vsh.yaml
+++ b/target/executable/stats/generate_well_statistics/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "generate_well_statistics"
 namespace: "stats"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -230,7 +230,7 @@ engines:
  id: "docker"
  image: "python:3.13-trixie"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -260,11 +260,11 @@ build_info:
  output: "target/executable/stats/generate_well_statistics"
  executable: "target/executable/stats/generate_well_statistics/generate_well_statistics"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -296,7 +296,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/executable/stats/generate_well_statistics/_viash.yaml
+++ b/target/executable/stats/generate_well_statistics/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/executable/stats/generate_well_statistics/generate_well_statistics
+++ b/target/executable/stats/generate_well_statistics/generate_well_statistics
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# generate_well_statistics v0.14.5
+# generate_well_statistics v0.14.6
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -458,10 +458,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component stats generate_well_statistics"
-LABEL org.opencontainers.image.created="2025-12-12T15:31:36Z"
+LABEL org.opencontainers.image.created="2026-02-23T13:37:10Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="9d5018b257513e527f13faf524f1e9e6df01c465"
-LABEL org.opencontainers.image.version="v0.14.5"
+LABEL org.opencontainers.image.revision="9346c55e3f894994935b0928759dca9e56866d37"
+LABEL org.opencontainers.image.version="v0.14.6"

 VIASHDOCKER
  fi
@@ -578,7 +578,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "generate_well_statistics v0.14.5"
+  echo "generate_well_statistics v0.14.6"
  echo ""
  echo "Generate summary statistics from BAM files generated by STAR solo."
  echo ""
@@ -682,7 +682,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "generate_well_statistics v0.14.5"
+            echo "generate_well_statistics v0.14.6"
            exit
            ;;
        --input)
@@ -861,7 +861,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/generate_well_statistics:v0.14.5'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/stats/generate_well_statistics:v0.14.6'
  fi

  # print dockerfile
--- a/target/executable/utils/save_params/.config.vsh.yaml
+++ b/target/executable/utils/save_params/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "save_params"
 namespace: "utils"
-version: "v0.14.5"
+version: "v0.14.6"
 argument_groups:
 - name: "Inputs"
  arguments:
@@ -20,14 +20,23 @@ argument_groups:
    direction: "input"
    multiple: false
    multiple_sep: ";"
+  - type: "string"
+    name: "--workflow_analysis"
+    description: "Base64 encoded YAML containing workflow analysis information (name\
+      \ and version for all workflows)\n"
+    info: null
+    required: false
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
 - name: "Outputs"
  arguments:
  - type: "file"
    name: "--output"
    description: "The output YAML file\n"
    info: null
-    example:
-    - "output.yaml"
+    default:
+    - "params.yaml"
    must_exist: true
    create_parent: true
    required: true
@@ -128,7 +137,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +160,11 @@ build_info:
  output: "target/executable/utils/save_params"
  executable: "target/executable/utils/save_params/save_params"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -187,7 +196,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/executable/utils/save_params/_viash.yaml
+++ b/target/executable/utils/save_params/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/executable/utils/save_params/save_params
+++ b/target/executable/utils/save_params/save_params
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# save_params v0.14.5
+# save_params v0.14.6
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -453,10 +453,10 @@ RUN pip install --upgrade pip && \
  pip install --upgrade --no-cache-dir "pyyaml"

 LABEL org.opencontainers.image.description="Companion container for running component utils save_params"
-LABEL org.opencontainers.image.created="2025-12-12T15:31:36Z"
+LABEL org.opencontainers.image.created="2026-02-23T13:37:10Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="9d5018b257513e527f13faf524f1e9e6df01c465"
-LABEL org.opencontainers.image.version="v0.14.5"
+LABEL org.opencontainers.image.revision="9346c55e3f894994935b0928759dca9e56866d37"
+LABEL org.opencontainers.image.version="v0.14.6"

 VIASHDOCKER
  fi
@@ -573,7 +573,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "save_params v0.14.5"
+  echo "save_params v0.14.6"
  echo ""
  echo "Save parameters to a YAML file"
  echo ""
@@ -586,10 +586,15 @@ function ViashHelp {
  echo "        type: string, required parameter"
  echo "        base64 encoded yaml containing the state"
  echo ""
+  echo "    --workflow_analysis"
+  echo "        type: string"
+  echo "        Base64 encoded YAML containing workflow analysis information (name and"
+  echo "        version for all workflows)"
+  echo ""
  echo "Outputs:"
  echo "    --output"
  echo "        type: file, required parameter, output, file must exist"
-  echo "        example: output.yaml"
+  echo "        default: params.yaml"
  echo "        The output YAML file"
  echo ""
  echo "Viash built in Computational Requirements:"
@@ -639,7 +644,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "save_params v0.14.5"
+            echo "save_params v0.14.6"
            exit
            ;;
        --id)
@@ -664,6 +669,17 @@ while [[ $# -gt 0 ]]; do
            VIASH_PAR_PARAMS_YAML=$(ViashRemoveFlags "$1")
            shift 1
            ;;
+        --workflow_analysis)
+            [ -n "$VIASH_PAR_WORKFLOW_ANALYSIS" ] && ViashError Bad arguments for option \'--workflow_analysis\': \'$VIASH_PAR_WORKFLOW_ANALYSIS\' \& \'$2\' - you should provide exactly one argument for this option. && exit 1
+            VIASH_PAR_WORKFLOW_ANALYSIS="$2"
+            [ $# -lt 2 ] && ViashError Not enough arguments passed to --workflow_analysis. Use "--help" to get more information on the parameters. && exit 1
+            shift 2
+            ;;
+        --workflow_analysis=*)
+            [ -n "$VIASH_PAR_WORKFLOW_ANALYSIS" ] && ViashError Bad arguments for option \'--workflow_analysis=*\': \'$VIASH_PAR_WORKFLOW_ANALYSIS\' \& \'$2\' - you should provide exactly one argument for this option. && exit 1
+            VIASH_PAR_WORKFLOW_ANALYSIS=$(ViashRemoveFlags "$1")
+            shift 1
+            ;;
        --output)
            [ -n "$VIASH_PAR_OUTPUT" ] && ViashError Bad arguments for option \'--output\': \'$VIASH_PAR_OUTPUT\' \& \'$2\' - you should provide exactly one argument for this option. && exit 1
            VIASH_PAR_OUTPUT="$2"
@@ -763,7 +779,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/utils/save_params:v0.14.5'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/utils/save_params:v0.14.6'
  fi

  # print dockerfile
@@ -1056,6 +1072,7 @@ import base64
 par = {
  'id': $( if [ ! -z ${VIASH_PAR_ID+x} ]; then echo "r'${VIASH_PAR_ID//\'/\'\"\'\"r\'}'"; else echo None; fi ),
  'params_yaml': $( if [ ! -z ${VIASH_PAR_PARAMS_YAML+x} ]; then echo "r'${VIASH_PAR_PARAMS_YAML//\'/\'\"\'\"r\'}'"; else echo None; fi ),
+  'workflow_analysis': $( if [ ! -z ${VIASH_PAR_WORKFLOW_ANALYSIS+x} ]; then echo "r'${VIASH_PAR_WORKFLOW_ANALYSIS//\'/\'\"\'\"r\'}'"; else echo None; fi ),
  'output': $( if [ ! -z ${VIASH_PAR_OUTPUT+x} ]; then echo "r'${VIASH_PAR_OUTPUT//\'/\'\"\'\"r\'}'"; else echo None; fi )
 }
 meta = {
@@ -1084,10 +1101,18 @@ dep = {

 ## VIASH END

+# Custom representer to preserve dict order in YAML output
+# Note: Python 3.7+ dicts maintain insertion order by default
+def represent_dict(dumper, data):
+    return dumper.represent_dict(data.items())
+
 class Dumper(yaml.Dumper):
    def increase_indent(self, flow=False, indentless=False):
        return super(Dumper, self).increase_indent(flow, False)

+# Register the representer for dicts to preserve order
+Dumper.add_representer(dict, represent_dict)
+
 def decode_params_yaml(encoded_yaml):
    yaml_bytes = base64.b64decode(encoded_yaml)
    yaml_string = yaml_bytes.decode('utf-8')
@@ -1097,8 +1122,26 @@ def decode_params_yaml(encoded_yaml):

 params = decode_params_yaml(par['params_yaml'])

+# Build the output structure
+output_data = params  # params is a list of states
+
+# Add workflow analysis information if provided
+if par.get('workflow_analysis'):
+    try:
+        analysis_bytes = base64.b64decode(par['workflow_analysis'])
+        analysis_string = analysis_bytes.decode('utf-8')
+        analysis = yaml.safe_load(analysis_string)
+        # Since params is a list, create a dict wrapper
+        output_data = {
+            'params': params,
+            'analysis': analysis
+        }
+    except (TypeError, ValueError) as e:
+        e.add_note("Could not parse workflow_analysis YAML.")
+        raise
+
 with open(par["output"], 'w') as f:
-    yaml.dump(params, f, default_flow_style=False, Dumper=Dumper)
+    yaml.dump(output_data, f, default_flow_style=False, Dumper=Dumper)
 VIASHMAIN
 python -B "\$tempscript" &
 wait "\$!"
--- a/target/nextflow/eset/create_eset/.config.vsh.yaml
+++ b/target/nextflow/eset/create_eset/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "create_eset"
 namespace: "eset"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -178,7 +178,7 @@ engines:
  id: "docker"
  image: "rocker/r2u:24.04"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "r"
@@ -206,11 +206,11 @@ build_info:
  output: "target/nextflow/eset/create_eset"
  executable: "target/nextflow/eset/create_eset/main.nf"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -242,7 +242,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/nextflow/eset/create_eset/_viash.yaml
+++ b/target/nextflow/eset/create_eset/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/nextflow/eset/create_eset/main.nf
+++ b/target/nextflow/eset/create_eset/main.nf
@@ -1,4 +1,4 @@
-// create_eset v0.14.5
+// create_eset v0.14.6
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3036,7 +3036,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "create_eset",
  "namespace" : "eset",
-  "version" : "v0.14.5",
+  "version" : "v0.14.6",
  "authors" : [
    {
      "name" : "Dries Schaumont",
@@ -3271,7 +3271,7 @@ meta = [
      "id" : "docker",
      "image" : "rocker/r2u:24.04",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.14.5",
+      "target_tag" : "v0.14.6",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3309,12 +3309,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/eset/create_eset",
    "viash_version" : "0.9.4",
-    "git_commit" : "9d5018b257513e527f13faf524f1e9e6df01c465",
+    "git_commit" : "9346c55e3f894994935b0928759dca9e56866d37",
    "git_remote" : "https://github.com/viash-hub/htrnaseq"
  },
  "package_config" : {
    "name" : "htrnaseq",
-    "version" : "v0.14.5",
+    "version" : "v0.14.6",
    "summary" : "A workflow for high-throughput RNA-seq data analyses.\n",
    "description" : "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n",
    "info" : {
@@ -3332,7 +3332,7 @@ meta = [
      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+      ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
    ],
    "keywords" : [
      "bioinformatics",
@@ -4217,7 +4217,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/htrnaseq/eset/create_eset",
-    "tag" : "v0.14.5"
+    "tag" : "v0.14.6"
  },
  "tag" : "$id"
 }'''),
--- a/target/nextflow/eset/create_eset/nextflow.config
+++ b/target/nextflow/eset/create_eset/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'eset/create_eset'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.14.5'
+  version = 'v0.14.6'
  author = 'Dries Schaumont, Marijke Van Moerbeke'
 }

--- a/target/nextflow/eset/create_fdata/.config.vsh.yaml
+++ b/target/nextflow/eset/create_fdata/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "create_fdata"
 namespace: "eset"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -154,7 +154,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -183,11 +183,11 @@ build_info:
  output: "target/nextflow/eset/create_fdata"
  executable: "target/nextflow/eset/create_fdata/main.nf"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -219,7 +219,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/nextflow/eset/create_fdata/_viash.yaml
+++ b/target/nextflow/eset/create_fdata/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/nextflow/eset/create_fdata/main.nf
+++ b/target/nextflow/eset/create_fdata/main.nf
@@ -1,4 +1,4 @@
-// create_fdata v0.14.5
+// create_fdata v0.14.6
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3036,7 +3036,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "create_fdata",
  "namespace" : "eset",
-  "version" : "v0.14.5",
+  "version" : "v0.14.6",
  "authors" : [
    {
      "name" : "Dries Schaumont",
@@ -3238,7 +3238,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.14.5",
+      "target_tag" : "v0.14.6",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3279,12 +3279,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/eset/create_fdata",
    "viash_version" : "0.9.4",
-    "git_commit" : "9d5018b257513e527f13faf524f1e9e6df01c465",
+    "git_commit" : "9346c55e3f894994935b0928759dca9e56866d37",
    "git_remote" : "https://github.com/viash-hub/htrnaseq"
  },
  "package_config" : {
    "name" : "htrnaseq",
-    "version" : "v0.14.5",
+    "version" : "v0.14.6",
    "summary" : "A workflow for high-throughput RNA-seq data analyses.\n",
    "description" : "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n",
    "info" : {
@@ -3302,7 +3302,7 @@ meta = [
      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+      ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
    ],
    "keywords" : [
      "bioinformatics",
@@ -3872,7 +3872,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/htrnaseq/eset/create_fdata",
-    "tag" : "v0.14.5"
+    "tag" : "v0.14.6"
  },
  "tag" : "$id"
 }'''),
--- a/target/nextflow/eset/create_fdata/nextflow.config
+++ b/target/nextflow/eset/create_fdata/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'eset/create_fdata'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.14.5'
+  version = 'v0.14.6'
  description = 'Create a fdata file\n'
  author = 'Dries Schaumont, Marijke Van Moerbeke'
 }
--- a/target/nextflow/eset/create_pdata/.config.vsh.yaml
+++ b/target/nextflow/eset/create_pdata/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "create_pdata"
 namespace: "eset"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -168,7 +168,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -197,11 +197,11 @@ build_info:
  output: "target/nextflow/eset/create_pdata"
  executable: "target/nextflow/eset/create_pdata/main.nf"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -233,7 +233,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/nextflow/eset/create_pdata/_viash.yaml
+++ b/target/nextflow/eset/create_pdata/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/nextflow/eset/create_pdata/main.nf
+++ b/target/nextflow/eset/create_pdata/main.nf
@@ -1,4 +1,4 @@
-// create_pdata v0.14.5
+// create_pdata v0.14.6
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3036,7 +3036,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "create_pdata",
  "namespace" : "eset",
-  "version" : "v0.14.5",
+  "version" : "v0.14.6",
  "authors" : [
    {
      "name" : "Dries Schaumont",
@@ -3252,7 +3252,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.14.5",
+      "target_tag" : "v0.14.6",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3293,12 +3293,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/eset/create_pdata",
    "viash_version" : "0.9.4",
-    "git_commit" : "9d5018b257513e527f13faf524f1e9e6df01c465",
+    "git_commit" : "9346c55e3f894994935b0928759dca9e56866d37",
    "git_remote" : "https://github.com/viash-hub/htrnaseq"
  },
  "package_config" : {
    "name" : "htrnaseq",
-    "version" : "v0.14.5",
+    "version" : "v0.14.6",
    "summary" : "A workflow for high-throughput RNA-seq data analyses.\n",
    "description" : "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n",
    "info" : {
@@ -3316,7 +3316,7 @@ meta = [
      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+      ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
    ],
    "keywords" : [
      "bioinformatics",
@@ -3812,7 +3812,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/htrnaseq/eset/create_pdata",
-    "tag" : "v0.14.5"
+    "tag" : "v0.14.6"
  },
  "tag" : "$id"
 }'''),
--- a/target/nextflow/eset/create_pdata/nextflow.config
+++ b/target/nextflow/eset/create_pdata/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'eset/create_pdata'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.14.5'
+  version = 'v0.14.6'
  description = 'Create a pdata file by combining the mapping statistics \n'
  author = 'Dries Schaumont, Marijke Van Moerbeke'
 }
--- a/target/nextflow/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
+++ b/target/nextflow/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "check_eset"
 namespace: "integration_test_components/htrnaseq"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -134,7 +134,7 @@ engines:
  id: "docker"
  image: "bioconductor/bioconductor_docker:3.19"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "r"
@@ -155,11 +155,11 @@ build_info:
  output: "target/nextflow/integration_test_components/htrnaseq/check_eset"
  executable: "target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -191,7 +191,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/nextflow/integration_test_components/htrnaseq/check_eset/_viash.yaml
+++ b/target/nextflow/integration_test_components/htrnaseq/check_eset/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf
+++ b/target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf
@@ -1,4 +1,4 @@
-// check_eset v0.14.5
+// check_eset v0.14.6
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "check_eset",
  "namespace" : "integration_test_components/htrnaseq",
-  "version" : "v0.14.5",
+  "version" : "v0.14.6",
  "authors" : [
    {
      "name" : "Dries Schaumont",
@@ -3206,7 +3206,7 @@ meta = [
      "id" : "docker",
      "image" : "bioconductor/bioconductor_docker:3.19",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.14.5",
+      "target_tag" : "v0.14.6",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3233,12 +3233,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/integration_test_components/htrnaseq/check_eset",
    "viash_version" : "0.9.4",
-    "git_commit" : "9d5018b257513e527f13faf524f1e9e6df01c465",
+    "git_commit" : "9346c55e3f894994935b0928759dca9e56866d37",
    "git_remote" : "https://github.com/viash-hub/htrnaseq"
  },
  "package_config" : {
    "name" : "htrnaseq",
-    "version" : "v0.14.5",
+    "version" : "v0.14.6",
    "summary" : "A workflow for high-throughput RNA-seq data analyses.\n",
    "description" : "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n",
    "info" : {
@@ -3256,7 +3256,7 @@ meta = [
      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+      ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
    ],
    "keywords" : [
      "bioinformatics",
@@ -3906,7 +3906,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/htrnaseq/integration_test_components/htrnaseq/check_eset",
-    "tag" : "v0.14.5"
+    "tag" : "v0.14.6"
  },
  "tag" : "$id"
 }'''),
--- a/target/nextflow/integration_test_components/htrnaseq/check_eset/nextflow.config
+++ b/target/nextflow/integration_test_components/htrnaseq/check_eset/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'integration_test_components/htrnaseq/check_eset'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.14.5'
+  version = 'v0.14.6'
  description = 'This component test the ExpressionSet object as output by the main pipeline.'
  author = 'Dries Schaumont'
 }
--- a/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml
+++ b/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "check_cutadapt_output"
 namespace: "integration_test_components/well_demultiplexing"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -141,7 +141,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -164,11 +164,11 @@ build_info:
  output: "target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output"
  executable: "target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/main.nf"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -200,7 +200,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/_viash.yaml
+++ b/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/main.nf
+++ b/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/main.nf
@@ -1,4 +1,4 @@
-// check_cutadapt_output v0.14.5
+// check_cutadapt_output v0.14.6
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "check_cutadapt_output",
  "namespace" : "integration_test_components/well_demultiplexing",
-  "version" : "v0.14.5",
+  "version" : "v0.14.6",
  "authors" : [
    {
      "name" : "Dries Schaumont",
@@ -3213,7 +3213,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.14.5",
+      "target_tag" : "v0.14.6",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3244,12 +3244,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output",
    "viash_version" : "0.9.4",
-    "git_commit" : "9d5018b257513e527f13faf524f1e9e6df01c465",
+    "git_commit" : "9346c55e3f894994935b0928759dca9e56866d37",
    "git_remote" : "https://github.com/viash-hub/htrnaseq"
  },
  "package_config" : {
    "name" : "htrnaseq",
-    "version" : "v0.14.5",
+    "version" : "v0.14.6",
    "summary" : "A workflow for high-throughput RNA-seq data analyses.\n",
    "description" : "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n",
    "info" : {
@@ -3267,7 +3267,7 @@ meta = [
      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+      ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
    ],
    "keywords" : [
      "bioinformatics",
@@ -3786,7 +3786,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/htrnaseq/integration_test_components/well_demultiplexing/check_cutadapt_output",
-    "tag" : "v0.14.5"
+    "tag" : "v0.14.6"
  },
  "tag" : "$id"
 }'''),
--- a/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/nextflow.config
+++ b/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'integration_test_components/well_demultiplexing/check_cutadapt_output'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.14.5'
+  version = 'v0.14.6'
  description = 'This component test the cutadapt output from the well_demultiplex subworkflow.'
  author = 'Dries Schaumont'
 }
--- a/target/nextflow/io/publish_fastqs/.config.vsh.yaml
+++ b/target/nextflow/io/publish_fastqs/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "publish_fastqs"
 namespace: "io"
-version: "v0.14.5"
+version: "v0.14.6"
 argument_groups:
 - name: "Input arguments"
  arguments:
@@ -121,7 +121,7 @@ engines:
  id: "docker"
  image: "debian:stable-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -139,11 +139,11 @@ build_info:
  output: "target/nextflow/io/publish_fastqs"
  executable: "target/nextflow/io/publish_fastqs/main.nf"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -175,7 +175,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/nextflow/io/publish_fastqs/_viash.yaml
+++ b/target/nextflow/io/publish_fastqs/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/nextflow/io/publish_fastqs/main.nf
+++ b/target/nextflow/io/publish_fastqs/main.nf
@@ -1,4 +1,4 @@
-// publish_fastqs v0.14.5
+// publish_fastqs v0.14.6
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3032,7 +3032,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "publish_fastqs",
  "namespace" : "io",
-  "version" : "v0.14.5",
+  "version" : "v0.14.6",
  "argument_groups" : [
    {
      "name" : "Input arguments",
@@ -3184,7 +3184,7 @@ meta = [
      "id" : "docker",
      "image" : "debian:stable-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.14.5",
+      "target_tag" : "v0.14.6",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3207,12 +3207,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/io/publish_fastqs",
    "viash_version" : "0.9.4",
-    "git_commit" : "9d5018b257513e527f13faf524f1e9e6df01c465",
+    "git_commit" : "9346c55e3f894994935b0928759dca9e56866d37",
    "git_remote" : "https://github.com/viash-hub/htrnaseq"
  },
  "package_config" : {
    "name" : "htrnaseq",
-    "version" : "v0.14.5",
+    "version" : "v0.14.6",
    "summary" : "A workflow for high-throughput RNA-seq data analyses.\n",
    "description" : "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n",
    "info" : {
@@ -3230,7 +3230,7 @@ meta = [
      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+      ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
    ],
    "keywords" : [
      "bioinformatics",
@@ -3682,7 +3682,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/htrnaseq/io/publish_fastqs",
-    "tag" : "v0.14.5"
+    "tag" : "v0.14.6"
  },
  "tag" : "$id"
 }'''),
--- a/target/nextflow/io/publish_fastqs/nextflow.config
+++ b/target/nextflow/io/publish_fastqs/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'io/publish_fastqs'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.14.5'
+  version = 'v0.14.6'
  description = 'Publish the fastq files per well'
 }

--- a/target/nextflow/io/publish_results/.config.vsh.yaml
+++ b/target/nextflow/io/publish_results/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "publish_results"
 namespace: "io"
-version: "v0.14.5"
+version: "v0.14.6"
 argument_groups:
 - name: "Input arguments"
  arguments:
@@ -261,7 +261,7 @@ engines:
  id: "docker"
  image: "debian:stable-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -279,11 +279,11 @@ build_info:
  output: "target/nextflow/io/publish_results"
  executable: "target/nextflow/io/publish_results/main.nf"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -315,7 +315,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/nextflow/io/publish_results/_viash.yaml
+++ b/target/nextflow/io/publish_results/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/nextflow/io/publish_results/main.nf
+++ b/target/nextflow/io/publish_results/main.nf
@@ -1,4 +1,4 @@
-// publish_results v0.14.5
+// publish_results v0.14.6
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3032,7 +3032,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "publish_results",
  "namespace" : "io",
-  "version" : "v0.14.5",
+  "version" : "v0.14.6",
  "argument_groups" : [
    {
      "name" : "Input arguments",
@@ -3346,7 +3346,7 @@ meta = [
      "id" : "docker",
      "image" : "debian:stable-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.14.5",
+      "target_tag" : "v0.14.6",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3369,12 +3369,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/io/publish_results",
    "viash_version" : "0.9.4",
-    "git_commit" : "9d5018b257513e527f13faf524f1e9e6df01c465",
+    "git_commit" : "9346c55e3f894994935b0928759dca9e56866d37",
    "git_remote" : "https://github.com/viash-hub/htrnaseq"
  },
  "package_config" : {
    "name" : "htrnaseq",
-    "version" : "v0.14.5",
+    "version" : "v0.14.6",
    "summary" : "A workflow for high-throughput RNA-seq data analyses.\n",
    "description" : "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n",
    "info" : {
@@ -3392,7 +3392,7 @@ meta = [
      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+      ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
    ],
    "keywords" : [
      "bioinformatics",
@@ -3909,7 +3909,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/htrnaseq/io/publish_results",
-    "tag" : "v0.14.5"
+    "tag" : "v0.14.6"
  },
  "tag" : "$id"
 }'''),
--- a/target/nextflow/io/publish_results/nextflow.config
+++ b/target/nextflow/io/publish_results/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'io/publish_results'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.14.5'
+  version = 'v0.14.6'
  description = 'Publish the results'
 }

--- a/target/nextflow/parallel_map/.config.vsh.yaml
+++ b/target/nextflow/parallel_map/.config.vsh.yaml
@@ -1,5 +1,5 @@
 name: "parallel_map"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -248,7 +248,7 @@ engines:
  id: "docker"
  image: "debian:stable-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -285,11 +285,11 @@ build_info:
  output: "target/nextflow/parallel_map"
  executable: "target/nextflow/parallel_map/main.nf"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -321,7 +321,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/nextflow/parallel_map/_viash.yaml
+++ b/target/nextflow/parallel_map/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/nextflow/parallel_map/main.nf
+++ b/target/nextflow/parallel_map/main.nf
@@ -1,4 +1,4 @@
-// parallel_map v0.14.5
+// parallel_map v0.14.6
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "resources_dir": moduleDir.toRealPath().normalize(),
  "config": processConfig(readJsonBlob('''{
  "name" : "parallel_map",
-  "version" : "v0.14.5",
+  "version" : "v0.14.6",
  "authors" : [
    {
      "name" : "Dries Schaumont",
@@ -3332,7 +3332,7 @@ meta = [
      "id" : "docker",
      "image" : "debian:stable-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.14.5",
+      "target_tag" : "v0.14.6",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3379,12 +3379,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/parallel_map",
    "viash_version" : "0.9.4",
-    "git_commit" : "9d5018b257513e527f13faf524f1e9e6df01c465",
+    "git_commit" : "9346c55e3f894994935b0928759dca9e56866d37",
    "git_remote" : "https://github.com/viash-hub/htrnaseq"
  },
  "package_config" : {
    "name" : "htrnaseq",
-    "version" : "v0.14.5",
+    "version" : "v0.14.6",
    "summary" : "A workflow for high-throughput RNA-seq data analyses.\n",
    "description" : "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n",
    "info" : {
@@ -3402,7 +3402,7 @@ meta = [
      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+      ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
    ],
    "keywords" : [
      "bioinformatics",
@@ -4173,7 +4173,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/htrnaseq/parallel_map",
-    "tag" : "v0.14.5"
+    "tag" : "v0.14.6"
  },
  "tag" : "$id"
 }'''),
--- a/target/nextflow/parallel_map/nextflow.config
+++ b/target/nextflow/parallel_map/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'parallel_map'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.14.5'
+  version = 'v0.14.6'
  description = 'Map wells in batch, using STAR\nSpliced Transcripts Alignment to a Reference (C) Alexander Dobin\nhttps://github.com/alexdobin/STAR\n'
  author = 'Dries Schaumont, Toni Verbeiren'
 }
--- a/target/nextflow/report/create_report/.config.vsh.yaml
+++ b/target/nextflow/report/create_report/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "create_report"
 namespace: "report"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -168,7 +168,7 @@ engines:
  id: "docker"
  image: "rocker/r2u:24.04"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -225,11 +225,11 @@ build_info:
  output: "target/nextflow/report/create_report"
  executable: "target/nextflow/report/create_report/main.nf"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -261,7 +261,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/nextflow/report/create_report/_viash.yaml
+++ b/target/nextflow/report/create_report/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/nextflow/report/create_report/main.nf
+++ b/target/nextflow/report/create_report/main.nf
@@ -1,4 +1,4 @@
-// create_report v0.14.5
+// create_report v0.14.6
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3036,7 +3036,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "create_report",
  "namespace" : "report",
-  "version" : "v0.14.5",
+  "version" : "v0.14.6",
  "authors" : [
    {
      "name" : "Dries Schaumont",
@@ -3261,7 +3261,7 @@ meta = [
      "id" : "docker",
      "image" : "rocker/r2u:24.04",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.14.5",
+      "target_tag" : "v0.14.6",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3334,12 +3334,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/report/create_report",
    "viash_version" : "0.9.4",
-    "git_commit" : "9d5018b257513e527f13faf524f1e9e6df01c465",
+    "git_commit" : "9346c55e3f894994935b0928759dca9e56866d37",
    "git_remote" : "https://github.com/viash-hub/htrnaseq"
  },
  "package_config" : {
    "name" : "htrnaseq",
-    "version" : "v0.14.5",
+    "version" : "v0.14.6",
    "summary" : "A workflow for high-throughput RNA-seq data analyses.\n",
    "description" : "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n",
    "info" : {
@@ -3357,7 +3357,7 @@ meta = [
      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+      ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
    ],
    "keywords" : [
      "bioinformatics",
@@ -3849,7 +3849,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/htrnaseq/report/create_report",
-    "tag" : "v0.14.5"
+    "tag" : "v0.14.6"
  },
  "tag" : "$id"
 }'''),
--- a/target/nextflow/report/create_report/nextflow.config
+++ b/target/nextflow/report/create_report/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'report/create_report'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.14.5'
+  version = 'v0.14.6'
  description = 'Create a basic QC report in HTML format based on a number of esets.\n'
  author = 'Dries Schaumont, Marijke Van Moerbeke'
 }
--- a/target/nextflow/stats/combine_star_logs/.config.vsh.yaml
+++ b/target/nextflow/stats/combine_star_logs/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "combine_star_logs"
 namespace: "stats"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -175,7 +175,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -204,11 +204,11 @@ build_info:
  output: "target/nextflow/stats/combine_star_logs"
  executable: "target/nextflow/stats/combine_star_logs/main.nf"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -240,7 +240,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/nextflow/stats/combine_star_logs/_viash.yaml
+++ b/target/nextflow/stats/combine_star_logs/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/nextflow/stats/combine_star_logs/main.nf
+++ b/target/nextflow/stats/combine_star_logs/main.nf
@@ -1,4 +1,4 @@
-// combine_star_logs v0.14.5
+// combine_star_logs v0.14.6
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "combine_star_logs",
  "namespace" : "stats",
-  "version" : "v0.14.5",
+  "version" : "v0.14.6",
  "authors" : [
    {
      "name" : "Dries Schaumont",
@@ -3254,7 +3254,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.14.5",
+      "target_tag" : "v0.14.6",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3295,12 +3295,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/stats/combine_star_logs",
    "viash_version" : "0.9.4",
-    "git_commit" : "9d5018b257513e527f13faf524f1e9e6df01c465",
+    "git_commit" : "9346c55e3f894994935b0928759dca9e56866d37",
    "git_remote" : "https://github.com/viash-hub/htrnaseq"
  },
  "package_config" : {
    "name" : "htrnaseq",
-    "version" : "v0.14.5",
+    "version" : "v0.14.6",
    "summary" : "A workflow for high-throughput RNA-seq data analyses.\n",
    "description" : "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n",
    "info" : {
@@ -3318,7 +3318,7 @@ meta = [
      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+      ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
    ],
    "keywords" : [
      "bioinformatics",
@@ -3977,7 +3977,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/htrnaseq/stats/combine_star_logs",
-    "tag" : "v0.14.5"
+    "tag" : "v0.14.6"
  },
  "tag" : "$id"
 }'''),
--- a/target/nextflow/stats/combine_star_logs/nextflow.config
+++ b/target/nextflow/stats/combine_star_logs/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'stats/combine_star_logs'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.14.5'
+  version = 'v0.14.6'
  author = 'Dries Schaumont'
 }

--- a/target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml
+++ b/target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "generate_pool_statistics"
 namespace: "stats"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -159,7 +159,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -188,11 +188,11 @@ build_info:
  output: "target/nextflow/stats/generate_pool_statistics"
  executable: "target/nextflow/stats/generate_pool_statistics/main.nf"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -224,7 +224,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/nextflow/stats/generate_pool_statistics/_viash.yaml
+++ b/target/nextflow/stats/generate_pool_statistics/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/nextflow/stats/generate_pool_statistics/main.nf
+++ b/target/nextflow/stats/generate_pool_statistics/main.nf
@@ -1,4 +1,4 @@
-// generate_pool_statistics v0.14.5
+// generate_pool_statistics v0.14.6
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3036,7 +3036,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "generate_pool_statistics",
  "namespace" : "stats",
-  "version" : "v0.14.5",
+  "version" : "v0.14.6",
  "authors" : [
    {
      "name" : "Dries Schaumont",
@@ -3238,7 +3238,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.14.5",
+      "target_tag" : "v0.14.6",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3279,12 +3279,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/stats/generate_pool_statistics",
    "viash_version" : "0.9.4",
-    "git_commit" : "9d5018b257513e527f13faf524f1e9e6df01c465",
+    "git_commit" : "9346c55e3f894994935b0928759dca9e56866d37",
    "git_remote" : "https://github.com/viash-hub/htrnaseq"
  },
  "package_config" : {
    "name" : "htrnaseq",
-    "version" : "v0.14.5",
+    "version" : "v0.14.6",
    "summary" : "A workflow for high-throughput RNA-seq data analyses.\n",
    "description" : "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n",
    "info" : {
@@ -3302,7 +3302,7 @@ meta = [
      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+      ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
    ],
    "keywords" : [
      "bioinformatics",
@@ -3832,7 +3832,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/htrnaseq/stats/generate_pool_statistics",
-    "tag" : "v0.14.5"
+    "tag" : "v0.14.6"
  },
  "tag" : "$id"
 }'''),
--- a/target/nextflow/stats/generate_pool_statistics/nextflow.config
+++ b/target/nextflow/stats/generate_pool_statistics/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'stats/generate_pool_statistics'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.14.5'
+  version = 'v0.14.6'
  author = 'Dries Schaumont, Marijke Van Moerbeke'
 }

--- a/target/nextflow/stats/generate_well_statistics/.config.vsh.yaml
+++ b/target/nextflow/stats/generate_well_statistics/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "generate_well_statistics"
 namespace: "stats"
-version: "v0.14.5"
+version: "v0.14.6"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -230,7 +230,7 @@ engines:
  id: "docker"
  image: "python:3.13-trixie"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.14.5"
+  target_tag: "v0.14.6"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -260,11 +260,11 @@ build_info:
  output: "target/nextflow/stats/generate_well_statistics"
  executable: "target/nextflow/stats/generate_well_statistics/main.nf"
  viash_version: "0.9.4"
-  git_commit: "9d5018b257513e527f13faf524f1e9e6df01c465"
+  git_commit: "9346c55e3f894994935b0928759dca9e56866d37"
  git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
  name: "htrnaseq"
-  version: "v0.14.5"
+  version: "v0.14.6"
  summary: "A workflow for high-throughput RNA-seq data analyses.\n"
  description: "This workflow is designed to process high-throughput RNA-seq data,\
    \ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -296,7 +296,7 @@ package_config:
    \ '_viash.yaml'}\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
  keywords:
  - "bioinformatics"
  - "sequencing"
--- a/target/nextflow/stats/generate_well_statistics/_viash.yaml
+++ b/target/nextflow/stats/generate_well_statistics/_viash.yaml
@@ -1,5 +1,5 @@
 name: htrnaseq
-version: v0.14.5
+version: v0.14.6
 summary: |
  A workflow for high-throughput RNA-seq data analyses.
 description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
--- a/target/nextflow/stats/generate_well_statistics/main.nf
+++ b/target/nextflow/stats/generate_well_statistics/main.nf
@@ -1,4 +1,4 @@
-// generate_well_statistics v0.14.5
+// generate_well_statistics v0.14.6
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3036,7 +3036,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "generate_well_statistics",
  "namespace" : "stats",
-  "version" : "v0.14.5",
+  "version" : "v0.14.6",
  "authors" : [
    {
      "name" : "Dries Schaumont",
@@ -3319,7 +3319,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.13-trixie",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.14.5",
+      "target_tag" : "v0.14.6",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3361,12 +3361,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/stats/generate_well_statistics",
    "viash_version" : "0.9.4",
-    "git_commit" : "9d5018b257513e527f13faf524f1e9e6df01c465",
+    "git_commit" : "9346c55e3f894994935b0928759dca9e56866d37",
    "git_remote" : "https://github.com/viash-hub/htrnaseq"
  },
  "package_config" : {
    "name" : "htrnaseq",
-    "version" : "v0.14.5",
+    "version" : "v0.14.6",
    "summary" : "A workflow for high-throughput RNA-seq data analyses.\n",
    "description" : "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n",
    "info" : {
@@ -3384,7 +3384,7 @@ meta = [
      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.14.5'"
+      ".engines[.type == 'docker'].target_tag := 'v0.14.6'"
    ],
    "keywords" : [
      "bioinformatics",
@@ -3905,7 +3905,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/htrnaseq/stats/generate_well_statistics",
-    "tag" : "v0.14.5"
+    "tag" : "v0.14.6"
  },
  "tag" : "$id"
 }'''),
--- a/target/nextflow/stats/generate_well_statistics/nextflow.config
+++ b/target/nextflow/stats/generate_well_statistics/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'stats/generate_well_statistics'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.14.5'
+  version = 'v0.14.6'
  description = 'Generate summary statistics from BAM files generated by STAR solo.'
  author = 'Dries Schaumont, Marijke Van Moerbeke'
 }
--- a/Show More
+++ b/Show More