Build branch openpipeline/v3.0 with version v3.0.2 to openpipeline on branch v3.0 (d8755f49f)

Build pipeline: openpipelines-bio.openpipeline.v3.0.2-rddzk Source commit: d8755f49fb Source message: Backport PR #1133 to 3.0.x (#1134)
2026-02-04 13:15:40 +00:00
parent c92534d8f2
commit 15dc1de68f
766 changed files with 3729 additions and 3669 deletions
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,3 +1,9 @@
+# openpipelines 3.0.2
+
+## BUG FIXES
+
+* Fix parsing of CSV's failing when using remote paths (S3), causing an `InvocationTargetException` error (backported from PR #1133).
+
 # openpipelines 3.0.1

 ## BUG FIXES
--- a/_viash.yaml
+++ b/_viash.yaml
@@ -1,5 +1,5 @@
 viash_version: 0.9.4
-version: v3.0.1
+version: v3.0.2
 source: src
 target: target
 # Note: this causes the docker images to be renamed
--- a/src/workflows/annotation/harmony_knn/main.nf
+++ b/src/workflows/annotation/harmony_knn/main.nf
@@ -50,8 +50,11 @@ workflow run_wf {
        )
      | flatMap {id, state ->
        def outputDir = state.output
-        def types = readCsv(state.output_types.toUriString())
-        
+        def csv = state.output_types.splitCsv(strip: true, sep: ",").findAll{!it[0].startsWith("#")}
+        def header = csv.head()
+        def types = csv.tail().collect { row ->
+            [header, row].transpose().collectEntries()
+        }
        types.collect{ dat ->
          // def new_id = id + "_" + dat.name
          def new_id = id // it's okay because the channel will get split up anyways
@@ -187,7 +190,11 @@ workflow run_wf {
                ]
                return [id, new_state]
            }
-            def files = readCsv(state.output_files.toUriString())
+            def csv = state.output_files.splitCsv(strip: true, sep: ",").findAll{!it[0].startsWith("#")}
+            def header = csv.head()
+            def files = csv.tail().collect { row ->
+                [header, row].transpose().collectEntries()
+            }
            def query_file = files.findAll{ dat -> dat.name == 'query' }
            assert query_file.size() == 1, 'there should only be one query file'
            def reference_file = files.findAll{ dat -> dat.name == 'reference' }
--- a/src/workflows/annotation/scvi_knn/main.nf
+++ b/src/workflows/annotation/scvi_knn/main.nf
@@ -53,7 +53,11 @@ workflow run_wf {
      )
      | flatMap {id, state ->
        def outputDir = state.output
-        def types = readCsv(state.output_types.toUriString())
+        def csv = state.output_types.splitCsv(strip: true, sep: ",").findAll{!it[0].startsWith("#")}
+        def header = csv.head()
+        def types = csv.tail().collect { row ->
+            [header, row].transpose().collectEntries()
+        }
        
        types.collect{ dat ->
          // def new_id = id + "_" + dat.name
@@ -190,7 +194,11 @@ workflow run_wf {
            ]
            return [id, new_state]
          }
-          def files = readCsv(state.output_files.toUriString())
+          def csv = state.output_files.splitCsv(strip: true, sep: ",").findAll{!it[0].startsWith("#")}
+          def header = csv.head()
+          def files = csv.tail().collect { row ->
+              [header, row].transpose().collectEntries()
+          }
          def query_file = files.findAll{ dat -> dat.name == 'query' }
          assert query_file.size() == 1, 'there should only be one query file'
          def reference_file = files.findAll{ dat -> dat.name == 'reference' }
--- a/src/workflows/ingestion/cellranger_multi/main.nf
+++ b/src/workflows/ingestion/cellranger_multi/main.nf
@@ -116,7 +116,11 @@ workflow run_wf {
  output_ch = h5mu_stub_ch.concat(h5mu_ch)
    | flatMap {id, state ->
      def h5mu_list = state.output_h5mu
-      def samples = readCsv(state.sample_csv.toUriString())
+      def csv = state.sample_csv.splitCsv(strip: true, sep: ",").findAll{!it[0].startsWith("#")}
+      def header = csv.head()
+      def samples = csv.tail().collect { row ->
+          [header, row].transpose().collectEntries()
+      }
      println "Samples: $samples" 
      def result = h5mu_list.collect{ h5mu_file ->
        println "H5mu: ${h5mu_file}, getName: ${h5mu_file.getName()}"
--- a/src/workflows/multiomics/process_batches/main.nf
+++ b/src/workflows/multiomics/process_batches/main.nf
@@ -43,7 +43,11 @@ workflow run_wf {
      // by reading the output csv (the csv contains 1 line per output file)
      | flatMap {id, state ->
        def outputDir = state.output
-        def types = readCsv(state.output_types.toUriString())
+        def csv = state.output_types.splitCsv(strip: true, sep: ",").findAll{!it[0].startsWith("#")}
+        def header = csv.head()
+        def types = csv.tail().collect { row ->
+            [header, row].transpose().collectEntries()
+        }
        
        types.collect{ dat ->
          def new_id = state.original_id + "_${dat.name}" // Make a unique ID by appending the modality name.
--- a/src/workflows/multiomics/process_samples/main.nf
+++ b/src/workflows/multiomics/process_samples/main.nf
@@ -52,7 +52,11 @@ workflow run_wf {
      )
      | flatMap {id, state ->
        def outputDir = state.output
-        def types = readCsv(state.output_types.toUriString())
+        def csv = state.output_types.splitCsv(strip: true, sep: ",").findAll{!it[0].startsWith("#")}
+        def header = csv.head()
+        def types = csv.tail().collect { row ->
+            [header, row].transpose().collectEntries()
+        }
        
        types.collect{ dat ->
          // def new_id = id + "_" + dat.name
--- a/target/_private/executable/tiledb/move_mudata_obsm_to_tiledb/.config.vsh.yaml
+++ b/target/_private/executable/tiledb/move_mudata_obsm_to_tiledb/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "move_mudata_obsm_to_tiledb"
 namespace: "tiledb"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -195,7 +195,7 @@ engines:
  id: "docker"
  image: "python:3.12"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "python"
@@ -237,11 +237,11 @@ build_info:
  output: "target/_private/executable/tiledb/move_mudata_obsm_to_tiledb"
  executable: "target/_private/executable/tiledb/move_mudata_obsm_to_tiledb/move_mudata_obsm_to_tiledb"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -271,7 +271,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_private/executable/tiledb/move_mudata_obsm_to_tiledb/move_mudata_obsm_to_tiledb
+++ b/target/_private/executable/tiledb/move_mudata_obsm_to_tiledb/move_mudata_obsm_to_tiledb
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# move_mudata_obsm_to_tiledb v3.0.1
+# move_mudata_obsm_to_tiledb v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -454,10 +454,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component tiledb move_mudata_obsm_to_tiledb"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:33Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:26Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -574,7 +574,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm --env AWS_ACCESS_KEY_ID --env AWS_SECRET_ACCESS_K

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "move_mudata_obsm_to_tiledb v3.0.1"
+  echo "move_mudata_obsm_to_tiledb v3.0.2"
  echo ""
  echo "Move .obsm items from a MuData modality to an existing tileDB database."
  echo "The .obsm keys should not exist in the database yet; and the observations from"
@@ -664,7 +664,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "move_mudata_obsm_to_tiledb v3.0.1"
+            echo "move_mudata_obsm_to_tiledb v3.0.2"
            exit
            ;;
        --input_uri)
@@ -838,7 +838,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/tiledb/move_mudata_obsm_to_tiledb:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/tiledb/move_mudata_obsm_to_tiledb:v3.0.2'
  fi

  # print dockerfile
--- a/target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb/.config.vsh.yaml
+++ b/target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "move_mudata_obsm_to_tiledb"
 namespace: "tiledb"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -195,7 +195,7 @@ engines:
  id: "docker"
  image: "python:3.12"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "python"
@@ -237,11 +237,11 @@ build_info:
  output: "target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb"
  executable: "target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -271,7 +271,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb/main.nf
+++ b/target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb/main.nf
@@ -1,4 +1,4 @@
-// move_mudata_obsm_to_tiledb v3.0.1
+// move_mudata_obsm_to_tiledb v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "move_mudata_obsm_to_tiledb",
  "namespace" : "tiledb",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Dries Schaumont",
@@ -3277,7 +3277,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3335,12 +3335,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3365,7 +3365,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3910,7 +3910,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/tiledb/move_mudata_obsm_to_tiledb",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "label" : [
    "highmem",
--- a/target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb/nextflow.config
+++ b/target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'tiledb/move_mudata_obsm_to_tiledb'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'Move .obsm items from a MuData modality to an existing tileDB database.\nThe .obsm keys should not exist in the database yet; and the observations from the modality and \ntheir order should match with what is already present the tiledb database.\n'
  author = 'Dries Schaumont'
 }
--- a/target/_private/nextflow/workflows/multiomics/split_h5mu/.config.vsh.yaml
+++ b/target/_private/nextflow/workflows/multiomics/split_h5mu/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "split_h5mu"
 namespace: "workflows/multiomics"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -212,13 +212,13 @@ build_info:
  output: "target/_private/nextflow/workflows/multiomics/split_h5mu"
  executable: "target/_private/nextflow/workflows/multiomics/split_h5mu/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
  dependencies:
  - "target/nextflow/dataflow/split_h5mu"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -248,7 +248,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_private/nextflow/workflows/multiomics/split_h5mu/main.nf
+++ b/target/_private/nextflow/workflows/multiomics/split_h5mu/main.nf
@@ -1,4 +1,4 @@
-// split_h5mu v3.0.1
+// split_h5mu v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "split_h5mu",
  "namespace" : "workflows/multiomics",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Dries Schaumont",
@@ -3305,12 +3305,12 @@ meta = [
    "engine" : "native",
    "output" : "/workdir/root/repo/target/_private/nextflow/workflows/multiomics/split_h5mu",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3335,7 +3335,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
--- a/target/_private/nextflow/workflows/multiomics/split_h5mu/nextflow.config
+++ b/target/_private/nextflow/workflows/multiomics/split_h5mu/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'workflows/multiomics/split_h5mu'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'Split the samples of a single modality from a .h5mu (multimodal) sample into seperate .h5mu files based on the values of an .obs column of this modality. '
  author = 'Dries Schaumont'
 }
--- a/target/_private/nextflow/workflows/multiomics/split_modalities/.config.vsh.yaml
+++ b/target/_private/nextflow/workflows/multiomics/split_modalities/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "split_modalities"
 namespace: "workflows/multiomics"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Dries Schaumont"
  roles:
@@ -183,13 +183,13 @@ build_info:
  output: "target/_private/nextflow/workflows/multiomics/split_modalities"
  executable: "target/_private/nextflow/workflows/multiomics/split_modalities/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
  dependencies:
  - "target/nextflow/dataflow/split_modalities"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -219,7 +219,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_private/nextflow/workflows/multiomics/split_modalities/main.nf
+++ b/target/_private/nextflow/workflows/multiomics/split_modalities/main.nf
@@ -1,4 +1,4 @@
-// split_modalities v3.0.1
+// split_modalities v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "split_modalities",
  "namespace" : "workflows/multiomics",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Dries Schaumont",
@@ -3274,12 +3274,12 @@ meta = [
    "engine" : "native",
    "output" : "/workdir/root/repo/target/_private/nextflow/workflows/multiomics/split_modalities",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3304,7 +3304,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
--- a/target/_private/nextflow/workflows/multiomics/split_modalities/nextflow.config
+++ b/target/_private/nextflow/workflows/multiomics/split_modalities/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'workflows/multiomics/split_modalities'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'A pipeline to split a multimodal mudata files into several unimodal mudata files.'
  author = 'Dries Schaumont'
 }
--- a/target/_test/executable/download/sync_test_resources/.config.vsh.yaml
+++ b/target/_test/executable/download/sync_test_resources/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "sync_test_resources"
 namespace: "download"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Robrecht Cannoodt"
  roles:
@@ -174,7 +174,7 @@ engines:
  id: "docker"
  image: "amazon/aws-cli:2.17.11"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "yum"
@@ -195,11 +195,11 @@ build_info:
  output: "target/_test/executable/download/sync_test_resources"
  executable: "target/_test/executable/download/sync_test_resources/sync_test_resources"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -229,7 +229,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/download/sync_test_resources/sync_test_resources
+++ b/target/_test/executable/download/sync_test_resources/sync_test_resources
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# sync_test_resources v3.0.1
+# sync_test_resources v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -457,10 +457,10 @@ RUN wget https://github.com/mikefarah/yq/releases/latest/download/yq_linux_amd64

 LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
 LABEL org.opencontainers.image.description="Companion container for running component download sync_test_resources"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:30Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:35Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -577,7 +577,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "sync_test_resources v3.0.1"
+  echo "sync_test_resources v3.0.2"
  echo ""
  echo "Sync test resources to the local filesystem"
  echo ""
@@ -664,7 +664,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "sync_test_resources v3.0.1"
+            echo "sync_test_resources v3.0.2"
            exit
            ;;
        --input)
@@ -821,7 +821,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/download/sync_test_resources:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/download/sync_test_resources:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/annotation/harmony_knn_test/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/annotation/harmony_knn_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "harmony_knn_test"
 namespace: "test_workflows/annotation"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Dorien Roosen"
  info:
@@ -120,7 +120,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +151,11 @@ build_info:
  output: "target/_test/executable/test_workflows/annotation/harmony_knn_test"
  executable: "target/_test/executable/test_workflows/annotation/harmony_knn_test/harmony_knn_test"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -185,7 +185,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/annotation/harmony_knn_test/harmony_knn_test
+++ b/target/_test/executable/test_workflows/annotation/harmony_knn_test/harmony_knn_test
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# harmony_knn_test v3.0.1
+# harmony_knn_test v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/annotation harmony_knn_test"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:41Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:34Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "harmony_knn_test v3.0.1"
+  echo "harmony_knn_test v3.0.2"
  echo ""
  echo "This component tests the output of the annotation of the harmony_knn of"
  echo "workflow."
@@ -637,7 +637,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "harmony_knn_test v3.0.1"
+            echo "harmony_knn_test v3.0.2"
            exit
            ;;
        --input)
@@ -739,7 +739,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/annotation/harmony_knn_test:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/annotation/harmony_knn_test:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/annotation/scanvi_scarches_test/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/annotation/scanvi_scarches_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "scanvi_scarches_test"
 namespace: "test_workflows/annotation"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Dorien Roosen"
  info:
@@ -120,7 +120,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +151,11 @@ build_info:
  output: "target/_test/executable/test_workflows/annotation/scanvi_scarches_test"
  executable: "target/_test/executable/test_workflows/annotation/scanvi_scarches_test/scanvi_scarches_test"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -185,7 +185,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/annotation/scanvi_scarches_test/scanvi_scarches_test
+++ b/target/_test/executable/test_workflows/annotation/scanvi_scarches_test/scanvi_scarches_test
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# scanvi_scarches_test v3.0.1
+# scanvi_scarches_test v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/annotation scanvi_scarches_test"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:41Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:34Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "scanvi_scarches_test v3.0.1"
+  echo "scanvi_scarches_test v3.0.2"
  echo ""
  echo "This component tests the output of the annotation of the scanvi annotation"
  echo "workflow."
@@ -637,7 +637,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "scanvi_scarches_test v3.0.1"
+            echo "scanvi_scarches_test v3.0.2"
            exit
            ;;
        --input)
@@ -739,7 +739,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/annotation/scanvi_scarches_test:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/annotation/scanvi_scarches_test:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/annotation/scgpt_annotation_test/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/annotation/scgpt_annotation_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "scgpt_annotation_test"
 namespace: "test_workflows/annotation"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Dorien Roosen"
  info:
@@ -129,7 +129,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -160,11 +160,11 @@ build_info:
  output: "target/_test/executable/test_workflows/annotation/scgpt_annotation_test"
  executable: "target/_test/executable/test_workflows/annotation/scgpt_annotation_test/scgpt_annotation_test"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -194,7 +194,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/annotation/scgpt_annotation_test/scgpt_annotation_test
+++ b/target/_test/executable/test_workflows/annotation/scgpt_annotation_test/scgpt_annotation_test
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# scgpt_annotation_test v3.0.1
+# scgpt_annotation_test v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/annotation scgpt_annotation_test"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:41Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:35Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "scgpt_annotation_test v3.0.1"
+  echo "scgpt_annotation_test v3.0.2"
  echo ""
  echo "This component test the output of the the scgpt_annotation workflow."
  echo ""
@@ -641,7 +641,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "scgpt_annotation_test v3.0.1"
+            echo "scgpt_annotation_test v3.0.2"
            exit
            ;;
        --input)
@@ -754,7 +754,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/annotation/scgpt_annotation_test:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/annotation/scgpt_annotation_test:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/annotation/scvi_knn_test/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/annotation/scvi_knn_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "scvi_knn_test"
 namespace: "test_workflows/annotation"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Dorien Roosen"
  info:
@@ -120,7 +120,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +151,11 @@ build_info:
  output: "target/_test/executable/test_workflows/annotation/scvi_knn_test"
  executable: "target/_test/executable/test_workflows/annotation/scvi_knn_test/scvi_knn_test"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -185,7 +185,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/annotation/scvi_knn_test/scvi_knn_test
+++ b/target/_test/executable/test_workflows/annotation/scvi_knn_test/scvi_knn_test
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# scvi_knn_test v3.0.1
+# scvi_knn_test v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/annotation scvi_knn_test"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:41Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:34Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "scvi_knn_test v3.0.1"
+  echo "scvi_knn_test v3.0.2"
  echo ""
  echo "This component tests the output of the annotation of the scvi_knn of workflow."
  echo ""
@@ -636,7 +636,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "scvi_knn_test v3.0.1"
+            echo "scvi_knn_test v3.0.2"
            exit
            ;;
        --input)
@@ -738,7 +738,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/annotation/scvi_knn_test:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/annotation/scvi_knn_test:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/ingestion/bd_rhapsody_test/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/ingestion/bd_rhapsody_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "bd_rhapsody_test"
 namespace: "test_workflows/ingestion"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Jakub Majercik"
  info:
@@ -120,7 +120,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +151,11 @@ build_info:
  output: "target/_test/executable/test_workflows/ingestion/bd_rhapsody_test"
  executable: "target/_test/executable/test_workflows/ingestion/bd_rhapsody_test/bd_rhapsody_test"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -185,7 +185,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/ingestion/bd_rhapsody_test/bd_rhapsody_test
+++ b/target/_test/executable/test_workflows/ingestion/bd_rhapsody_test/bd_rhapsody_test
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# bd_rhapsody_test v3.0.1
+# bd_rhapsody_test v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Jakub Majercik"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/ingestion bd_rhapsody_test"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:44Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:33Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "bd_rhapsody_test v3.0.1"
+  echo "bd_rhapsody_test v3.0.2"
  echo ""
  echo "This component test the output of the integration test of the bd_rhapsody"
  echo "workflow."
@@ -637,7 +637,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "bd_rhapsody_test v3.0.1"
+            echo "bd_rhapsody_test v3.0.2"
            exit
            ;;
        --input)
@@ -739,7 +739,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/ingestion/bd_rhapsody_test:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/ingestion/bd_rhapsody_test:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/ingestion/cellranger_mapping_test/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/ingestion/cellranger_mapping_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "cellranger_mapping_test"
 namespace: "test_workflows/ingestion"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Jakub Majercik"
  info:
@@ -120,7 +120,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +151,11 @@ build_info:
  output: "target/_test/executable/test_workflows/ingestion/cellranger_mapping_test"
  executable: "target/_test/executable/test_workflows/ingestion/cellranger_mapping_test/cellranger_mapping_test"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -185,7 +185,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/ingestion/cellranger_mapping_test/cellranger_mapping_test
+++ b/target/_test/executable/test_workflows/ingestion/cellranger_mapping_test/cellranger_mapping_test
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# cellranger_mapping_test v3.0.1
+# cellranger_mapping_test v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Jakub Majercik"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/ingestion cellranger_mapping_test"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:44Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:33Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "cellranger_mapping_test v3.0.1"
+  echo "cellranger_mapping_test v3.0.2"
  echo ""
  echo "This component test the output of the integration test of the cellranger mapping"
  echo "workflow."
@@ -637,7 +637,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "cellranger_mapping_test v3.0.1"
+            echo "cellranger_mapping_test v3.0.2"
            exit
            ;;
        --input)
@@ -739,7 +739,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/ingestion/cellranger_mapping_test:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/ingestion/cellranger_mapping_test:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/ingestion/cellranger_multi_test/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/ingestion/cellranger_multi_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "cellranger_multi_test"
 namespace: "test_workflows/ingestion"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Jakub Majercik"
  info:
@@ -120,7 +120,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +151,11 @@ build_info:
  output: "target/_test/executable/test_workflows/ingestion/cellranger_multi_test"
  executable: "target/_test/executable/test_workflows/ingestion/cellranger_multi_test/cellranger_multi_test"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -185,7 +185,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/ingestion/cellranger_multi_test/cellranger_multi_test
+++ b/target/_test/executable/test_workflows/ingestion/cellranger_multi_test/cellranger_multi_test
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# cellranger_multi_test v3.0.1
+# cellranger_multi_test v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Jakub Majercik"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/ingestion cellranger_multi_test"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:43Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:33Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "cellranger_multi_test v3.0.1"
+  echo "cellranger_multi_test v3.0.2"
  echo ""
  echo "This component test the output of the integration test of the cellranger multi"
  echo "workflow."
@@ -637,7 +637,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "cellranger_multi_test v3.0.1"
+            echo "cellranger_multi_test v3.0.2"
            exit
            ;;
        --input)
@@ -745,7 +745,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/ingestion/cellranger_multi_test:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/ingestion/cellranger_multi_test:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/ingestion/cellranger_postprocessing_test/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/ingestion/cellranger_postprocessing_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "cellranger_postprocessing_test"
 namespace: "test_workflows/ingestion"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Jakub Majercik"
  info:
@@ -140,7 +140,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -171,11 +171,11 @@ build_info:
  output: "target/_test/executable/test_workflows/ingestion/cellranger_postprocessing_test"
  executable: "target/_test/executable/test_workflows/ingestion/cellranger_postprocessing_test/cellranger_postprocessing_test"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -205,7 +205,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/ingestion/cellranger_postprocessing_test/cellranger_postprocessing_test
+++ b/target/_test/executable/test_workflows/ingestion/cellranger_postprocessing_test/cellranger_postprocessing_test
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# cellranger_postprocessing_test v3.0.1
+# cellranger_postprocessing_test v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Jakub Majercik"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/ingestion cellranger_postprocessing_test"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:43Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:33Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "cellranger_postprocessing_test v3.0.1"
+  echo "cellranger_postprocessing_test v3.0.2"
  echo ""
  echo "This component test the output of the integration test of the cellranger"
  echo "postprocessing workflow."
@@ -646,7 +646,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "cellranger_postprocessing_test v3.0.1"
+            echo "cellranger_postprocessing_test v3.0.2"
            exit
            ;;
        --input)
@@ -770,7 +770,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/ingestion/cellranger_postprocessing_test:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/ingestion/cellranger_postprocessing_test:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/ingestion/conversion_test/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/ingestion/conversion_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "conversion_test"
 namespace: "test_workflows/ingestion"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Jakub Majercik"
  info:
@@ -120,7 +120,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +151,11 @@ build_info:
  output: "target/_test/executable/test_workflows/ingestion/conversion_test"
  executable: "target/_test/executable/test_workflows/ingestion/conversion_test/conversion_test"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -185,7 +185,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/ingestion/conversion_test/conversion_test
+++ b/target/_test/executable/test_workflows/ingestion/conversion_test/conversion_test
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# conversion_test v3.0.1
+# conversion_test v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Jakub Majercik"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/ingestion conversion_test"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:44Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:34Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "conversion_test v3.0.1"
+  echo "conversion_test v3.0.2"
  echo ""
  echo "This component test the output of the integration test of the conversion"
  echo "workflow."
@@ -637,7 +637,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "conversion_test v3.0.1"
+            echo "conversion_test v3.0.2"
            exit
            ;;
        --input)
@@ -739,7 +739,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/ingestion/conversion_test:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/ingestion/conversion_test:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/multiomics/dimensionality_reduction_test/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/multiomics/dimensionality_reduction_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "dimensionality_reduction_test"
 namespace: "test_workflows/multiomics"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Kai Waldrant"
  info:
@@ -121,7 +121,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -148,11 +148,11 @@ build_info:
  output: "target/_test/executable/test_workflows/multiomics/dimensionality_reduction_test"
  executable: "target/_test/executable/test_workflows/multiomics/dimensionality_reduction_test/dimensionality_reduction_test"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -182,7 +182,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/multiomics/dimensionality_reduction_test/dimensionality_reduction_test
+++ b/target/_test/executable/test_workflows/multiomics/dimensionality_reduction_test/dimensionality_reduction_test
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# dimensionality_reduction_test v3.0.1
+# dimensionality_reduction_test v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -458,10 +458,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/multiomics dimensionality_reduction_test"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:42Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -578,7 +578,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "dimensionality_reduction_test v3.0.1"
+  echo "dimensionality_reduction_test v3.0.2"
  echo ""
  echo "This component test the output of the integration test of"
  echo "dimensionality_reduction."
@@ -636,7 +636,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "dimensionality_reduction_test v3.0.1"
+            echo "dimensionality_reduction_test v3.0.2"
            exit
            ;;
        --input)
@@ -738,7 +738,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/multiomics/dimensionality_reduction_test:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/multiomics/dimensionality_reduction_test:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/multiomics/process_batches/workflow_test/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/multiomics/process_batches/workflow_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "workflow_test"
 namespace: "test_workflows/multiomics/process_batches"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Kai Waldrant"
  info:
@@ -136,7 +136,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -167,11 +167,11 @@ build_info:
  output: "target/_test/executable/test_workflows/multiomics/process_batches/workflow_test"
  executable: "target/_test/executable/test_workflows/multiomics/process_batches/workflow_test/workflow_test"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -201,7 +201,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/multiomics/process_batches/workflow_test/workflow_test
+++ b/target/_test/executable/test_workflows/multiomics/process_batches/workflow_test/workflow_test
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# workflow_test v3.0.1
+# workflow_test v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/multiomics/process_batches workflow_test"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:42Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "workflow_test v3.0.1"
+  echo "workflow_test v3.0.2"
  echo ""
  echo "This component tests the output of the integration test of process_batches"
  echo "test_wf."
@@ -642,7 +642,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "workflow_test v3.0.1"
+            echo "workflow_test v3.0.2"
            exit
            ;;
        --input)
@@ -755,7 +755,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/multiomics/process_batches/workflow_test:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/multiomics/process_batches/workflow_test:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/multiomics/process_batches/workflow_test2/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/multiomics/process_batches/workflow_test2/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "workflow_test2"
 namespace: "test_workflows/multiomics/process_batches"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Kai Waldrant"
  info:
@@ -136,7 +136,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -167,11 +167,11 @@ build_info:
  output: "target/_test/executable/test_workflows/multiomics/process_batches/workflow_test2"
  executable: "target/_test/executable/test_workflows/multiomics/process_batches/workflow_test2/workflow_test2"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -201,7 +201,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/multiomics/process_batches/workflow_test2/workflow_test2
+++ b/target/_test/executable/test_workflows/multiomics/process_batches/workflow_test2/workflow_test2
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# workflow_test2 v3.0.1
+# workflow_test2 v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/multiomics/process_batches workflow_test2"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:43Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "workflow_test2 v3.0.1"
+  echo "workflow_test2 v3.0.2"
  echo ""
  echo "This component tests the output of the integration test of process_batches"
  echo "test_wf2."
@@ -642,7 +642,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "workflow_test2 v3.0.1"
+            echo "workflow_test2 v3.0.2"
            exit
            ;;
        --input)
@@ -755,7 +755,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/multiomics/process_batches/workflow_test2:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/multiomics/process_batches/workflow_test2:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/multiomics/split_h5mu_test/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/multiomics/split_h5mu_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "split_h5mu_test"
 namespace: "test_workflows/multiomics"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Kai Waldrant"
  info:
@@ -145,7 +145,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -176,11 +176,11 @@ build_info:
  output: "target/_test/executable/test_workflows/multiomics/split_h5mu_test"
  executable: "target/_test/executable/test_workflows/multiomics/split_h5mu_test/split_h5mu_test"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -210,7 +210,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/multiomics/split_h5mu_test/split_h5mu_test
+++ b/target/_test/executable/test_workflows/multiomics/split_h5mu_test/split_h5mu_test
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# split_h5mu_test v3.0.1
+# split_h5mu_test v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/multiomics split_h5mu_test"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:42Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "split_h5mu_test v3.0.1"
+  echo "split_h5mu_test v3.0.2"
  echo ""
  echo "This component test the output of the integration test of split_h5mu."
  echo ""
@@ -646,7 +646,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "split_h5mu_test v3.0.1"
+            echo "split_h5mu_test v3.0.2"
            exit
            ;;
        --input)
@@ -770,7 +770,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/multiomics/split_h5mu_test:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/multiomics/split_h5mu_test:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/multiomics/split_modalities_test/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/multiomics/split_modalities_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "split_modalities_test"
 namespace: "test_workflows/multiomics"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Kai Waldrant"
  info:
@@ -145,7 +145,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -176,11 +176,11 @@ build_info:
  output: "target/_test/executable/test_workflows/multiomics/split_modalities_test"
  executable: "target/_test/executable/test_workflows/multiomics/split_modalities_test/split_modalities_test"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -210,7 +210,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/multiomics/split_modalities_test/split_modalities_test
+++ b/target/_test/executable/test_workflows/multiomics/split_modalities_test/split_modalities_test
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# split_modalities_test v3.0.1
+# split_modalities_test v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Kai Waldrant"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/multiomics split_modalities_test"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:42Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "split_modalities_test v3.0.1"
+  echo "split_modalities_test v3.0.2"
  echo ""
  echo "This component test the output of the integration test of split_modalities."
  echo ""
@@ -646,7 +646,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "split_modalities_test v3.0.1"
+            echo "split_modalities_test v3.0.2"
            exit
            ;;
        --input)
@@ -770,7 +770,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/multiomics/split_modalities_test:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/multiomics/split_modalities_test:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/executable/test_workflows/qc/qc_test/.config.vsh.yaml
+++ b/target/_test/executable/test_workflows/qc/qc_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "qc_test"
 namespace: "test_workflows/qc"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Jakub Majercik"
  info:
@@ -134,7 +134,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -165,11 +165,11 @@ build_info:
  output: "target/_test/executable/test_workflows/qc/qc_test"
  executable: "target/_test/executable/test_workflows/qc/qc_test/qc_test"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -199,7 +199,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/executable/test_workflows/qc/qc_test/qc_test
+++ b/target/_test/executable/test_workflows/qc/qc_test/qc_test
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# qc_test v3.0.1
+# qc_test v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Jakub Majercik"
 LABEL org.opencontainers.image.description="Companion container for running component test_workflows/qc qc_test"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:44Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:32Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "qc_test v3.0.1"
+  echo "qc_test v3.0.2"
  echo ""
  echo "This component test the output of the integration test of the QC workflow."
  echo ""
@@ -641,7 +641,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "qc_test v3.0.1"
+            echo "qc_test v3.0.2"
            exit
            ;;
        --input)
@@ -754,7 +754,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/qc/qc_test:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/test_workflows/qc/qc_test:v3.0.2'
  fi

  # print dockerfile
--- a/target/_test/nextflow/download/sync_test_resources/.config.vsh.yaml
+++ b/target/_test/nextflow/download/sync_test_resources/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "sync_test_resources"
 namespace: "download"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Robrecht Cannoodt"
  roles:
@@ -174,7 +174,7 @@ engines:
  id: "docker"
  image: "amazon/aws-cli:2.17.11"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "yum"
@@ -195,11 +195,11 @@ build_info:
  output: "target/_test/nextflow/download/sync_test_resources"
  executable: "target/_test/nextflow/download/sync_test_resources/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -229,7 +229,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/download/sync_test_resources/main.nf
+++ b/target/_test/nextflow/download/sync_test_resources/main.nf
@@ -1,4 +1,4 @@
-// sync_test_resources v3.0.1
+// sync_test_resources v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "sync_test_resources",
  "namespace" : "download",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Robrecht Cannoodt",
@@ -3257,7 +3257,7 @@ meta = [
      "id" : "docker",
      "image" : "amazon/aws-cli:2.17.11",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3285,12 +3285,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/download/sync_test_resources",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3315,7 +3315,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3801,7 +3801,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/download/sync_test_resources",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "tag" : "$id"
 }'''),
--- a/target/_test/nextflow/download/sync_test_resources/nextflow.config
+++ b/target/_test/nextflow/download/sync_test_resources/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'download/sync_test_resources'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'Sync test resources to the local filesystem'
  author = 'Robrecht Cannoodt'
 }
--- a/target/_test/nextflow/test_workflows/annotation/harmony_knn_test/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/annotation/harmony_knn_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "harmony_knn_test"
 namespace: "test_workflows/annotation"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Dorien Roosen"
  info:
@@ -120,7 +120,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +151,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/annotation/harmony_knn_test"
  executable: "target/_test/nextflow/test_workflows/annotation/harmony_knn_test/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -185,7 +185,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/annotation/harmony_knn_test/main.nf
+++ b/target/_test/nextflow/test_workflows/annotation/harmony_knn_test/main.nf
@@ -1,4 +1,4 @@
-// harmony_knn_test v3.0.1
+// harmony_knn_test v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "harmony_knn_test",
  "namespace" : "test_workflows/annotation",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Dorien Roosen",
@@ -3187,7 +3187,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3227,12 +3227,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/annotation/harmony_knn_test",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3257,7 +3257,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3740,7 +3740,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/annotation/harmony_knn_test",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "tag" : "$id"
 }'''),
--- a/target/_test/nextflow/test_workflows/annotation/harmony_knn_test/nextflow.config
+++ b/target/_test/nextflow/test_workflows/annotation/harmony_knn_test/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/annotation/harmony_knn_test'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component tests the output of the annotation of the harmony_knn of workflow.'
  author = 'Dorien Roosen'
 }
--- a/target/_test/nextflow/test_workflows/annotation/scanvi_scarches_test/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/annotation/scanvi_scarches_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "scanvi_scarches_test"
 namespace: "test_workflows/annotation"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Dorien Roosen"
  info:
@@ -120,7 +120,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +151,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/annotation/scanvi_scarches_test"
  executable: "target/_test/nextflow/test_workflows/annotation/scanvi_scarches_test/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -185,7 +185,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/annotation/scanvi_scarches_test/main.nf
+++ b/target/_test/nextflow/test_workflows/annotation/scanvi_scarches_test/main.nf
@@ -1,4 +1,4 @@
-// scanvi_scarches_test v3.0.1
+// scanvi_scarches_test v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "scanvi_scarches_test",
  "namespace" : "test_workflows/annotation",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Dorien Roosen",
@@ -3187,7 +3187,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3227,12 +3227,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/annotation/scanvi_scarches_test",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3257,7 +3257,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3736,7 +3736,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/annotation/scanvi_scarches_test",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "tag" : "$id"
 }'''),
--- a/target/_test/nextflow/test_workflows/annotation/scanvi_scarches_test/nextflow.config
+++ b/target/_test/nextflow/test_workflows/annotation/scanvi_scarches_test/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/annotation/scanvi_scarches_test'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component tests the output of the annotation of the scanvi annotation workflow.'
  author = 'Dorien Roosen'
 }
--- a/target/_test/nextflow/test_workflows/annotation/scgpt_annotation_test/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/annotation/scgpt_annotation_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "scgpt_annotation_test"
 namespace: "test_workflows/annotation"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Dorien Roosen"
  info:
@@ -129,7 +129,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -160,11 +160,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/annotation/scgpt_annotation_test"
  executable: "target/_test/nextflow/test_workflows/annotation/scgpt_annotation_test/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -194,7 +194,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/annotation/scgpt_annotation_test/main.nf
+++ b/target/_test/nextflow/test_workflows/annotation/scgpt_annotation_test/main.nf
@@ -1,4 +1,4 @@
-// scgpt_annotation_test v3.0.1
+// scgpt_annotation_test v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "scgpt_annotation_test",
  "namespace" : "test_workflows/annotation",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Dorien Roosen",
@@ -3199,7 +3199,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3239,12 +3239,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/annotation/scgpt_annotation_test",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3269,7 +3269,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3750,7 +3750,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/annotation/scgpt_annotation_test",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "tag" : "$id"
 }'''),
--- a/target/_test/nextflow/test_workflows/annotation/scgpt_annotation_test/nextflow.config
+++ b/target/_test/nextflow/test_workflows/annotation/scgpt_annotation_test/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/annotation/scgpt_annotation_test'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component test the output of the the scgpt_annotation workflow.'
  author = 'Dorien Roosen'
 }
--- a/target/_test/nextflow/test_workflows/annotation/scvi_knn_test/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/annotation/scvi_knn_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "scvi_knn_test"
 namespace: "test_workflows/annotation"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Dorien Roosen"
  info:
@@ -120,7 +120,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +151,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/annotation/scvi_knn_test"
  executable: "target/_test/nextflow/test_workflows/annotation/scvi_knn_test/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -185,7 +185,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/annotation/scvi_knn_test/main.nf
+++ b/target/_test/nextflow/test_workflows/annotation/scvi_knn_test/main.nf
@@ -1,4 +1,4 @@
-// scvi_knn_test v3.0.1
+// scvi_knn_test v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "scvi_knn_test",
  "namespace" : "test_workflows/annotation",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Dorien Roosen",
@@ -3187,7 +3187,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3227,12 +3227,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/annotation/scvi_knn_test",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3257,7 +3257,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3737,7 +3737,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/annotation/scvi_knn_test",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "tag" : "$id"
 }'''),
--- a/target/_test/nextflow/test_workflows/annotation/scvi_knn_test/nextflow.config
+++ b/target/_test/nextflow/test_workflows/annotation/scvi_knn_test/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/annotation/scvi_knn_test'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component tests the output of the annotation of the scvi_knn of workflow.'
  author = 'Dorien Roosen'
 }
--- a/target/_test/nextflow/test_workflows/ingestion/bd_rhapsody_test/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/ingestion/bd_rhapsody_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "bd_rhapsody_test"
 namespace: "test_workflows/ingestion"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Jakub Majercik"
  info:
@@ -120,7 +120,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +151,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/ingestion/bd_rhapsody_test"
  executable: "target/_test/nextflow/test_workflows/ingestion/bd_rhapsody_test/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -185,7 +185,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/ingestion/bd_rhapsody_test/main.nf
+++ b/target/_test/nextflow/test_workflows/ingestion/bd_rhapsody_test/main.nf
@@ -1,4 +1,4 @@
-// bd_rhapsody_test v3.0.1
+// bd_rhapsody_test v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "bd_rhapsody_test",
  "namespace" : "test_workflows/ingestion",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Jakub Majercik",
@@ -3187,7 +3187,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3227,12 +3227,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/ingestion/bd_rhapsody_test",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3257,7 +3257,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3742,7 +3742,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/ingestion/bd_rhapsody_test",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "tag" : "$id"
 }'''),
--- a/target/_test/nextflow/test_workflows/ingestion/bd_rhapsody_test/nextflow.config
+++ b/target/_test/nextflow/test_workflows/ingestion/bd_rhapsody_test/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/ingestion/bd_rhapsody_test'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component test the output of the integration test of the bd_rhapsody workflow.'
  author = 'Jakub Majercik'
 }
--- a/target/_test/nextflow/test_workflows/ingestion/cellranger_mapping_test/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/ingestion/cellranger_mapping_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "cellranger_mapping_test"
 namespace: "test_workflows/ingestion"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Jakub Majercik"
  info:
@@ -120,7 +120,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +151,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/ingestion/cellranger_mapping_test"
  executable: "target/_test/nextflow/test_workflows/ingestion/cellranger_mapping_test/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -185,7 +185,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/ingestion/cellranger_mapping_test/main.nf
+++ b/target/_test/nextflow/test_workflows/ingestion/cellranger_mapping_test/main.nf
@@ -1,4 +1,4 @@
-// cellranger_mapping_test v3.0.1
+// cellranger_mapping_test v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "cellranger_mapping_test",
  "namespace" : "test_workflows/ingestion",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Jakub Majercik",
@@ -3187,7 +3187,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3227,12 +3227,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/ingestion/cellranger_mapping_test",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3257,7 +3257,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3720,7 +3720,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/ingestion/cellranger_mapping_test",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "tag" : "$id"
 }'''),
--- a/target/_test/nextflow/test_workflows/ingestion/cellranger_mapping_test/nextflow.config
+++ b/target/_test/nextflow/test_workflows/ingestion/cellranger_mapping_test/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/ingestion/cellranger_mapping_test'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component test the output of the integration test of the cellranger mapping workflow.'
  author = 'Jakub Majercik'
 }
--- a/target/_test/nextflow/test_workflows/ingestion/cellranger_multi_test/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/ingestion/cellranger_multi_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "cellranger_multi_test"
 namespace: "test_workflows/ingestion"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Jakub Majercik"
  info:
@@ -120,7 +120,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +151,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/ingestion/cellranger_multi_test"
  executable: "target/_test/nextflow/test_workflows/ingestion/cellranger_multi_test/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -185,7 +185,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/ingestion/cellranger_multi_test/main.nf
+++ b/target/_test/nextflow/test_workflows/ingestion/cellranger_multi_test/main.nf
@@ -1,4 +1,4 @@
-// cellranger_multi_test v3.0.1
+// cellranger_multi_test v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "cellranger_multi_test",
  "namespace" : "test_workflows/ingestion",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Jakub Majercik",
@@ -3187,7 +3187,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3227,12 +3227,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/ingestion/cellranger_multi_test",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3257,7 +3257,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3724,7 +3724,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/ingestion/cellranger_multi_test",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "tag" : "$id"
 }'''),
--- a/target/_test/nextflow/test_workflows/ingestion/cellranger_multi_test/nextflow.config
+++ b/target/_test/nextflow/test_workflows/ingestion/cellranger_multi_test/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/ingestion/cellranger_multi_test'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component test the output of the integration test of the cellranger multi workflow.'
  author = 'Jakub Majercik'
 }
--- a/target/_test/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "cellranger_postprocessing_test"
 namespace: "test_workflows/ingestion"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Jakub Majercik"
  info:
@@ -140,7 +140,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -171,11 +171,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/ingestion/cellranger_postprocessing_test"
  executable: "target/_test/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -205,7 +205,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/main.nf
+++ b/target/_test/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/main.nf
@@ -1,4 +1,4 @@
-// cellranger_postprocessing_test v3.0.1
+// cellranger_postprocessing_test v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "cellranger_postprocessing_test",
  "namespace" : "test_workflows/ingestion",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Jakub Majercik",
@@ -3210,7 +3210,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3250,12 +3250,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/ingestion/cellranger_postprocessing_test",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3280,7 +3280,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3755,7 +3755,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/ingestion/cellranger_postprocessing_test",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "tag" : "$id"
 }'''),
--- a/target/_test/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/nextflow.config
+++ b/target/_test/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/ingestion/cellranger_postprocessing_test'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component test the output of the integration test of the cellranger postprocessing workflow.'
  author = 'Jakub Majercik'
 }
--- a/target/_test/nextflow/test_workflows/ingestion/conversion_test/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/ingestion/conversion_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "conversion_test"
 namespace: "test_workflows/ingestion"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Jakub Majercik"
  info:
@@ -120,7 +120,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -151,11 +151,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/ingestion/conversion_test"
  executable: "target/_test/nextflow/test_workflows/ingestion/conversion_test/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -185,7 +185,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/ingestion/conversion_test/main.nf
+++ b/target/_test/nextflow/test_workflows/ingestion/conversion_test/main.nf
@@ -1,4 +1,4 @@
-// conversion_test v3.0.1
+// conversion_test v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "conversion_test",
  "namespace" : "test_workflows/ingestion",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Jakub Majercik",
@@ -3187,7 +3187,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3227,12 +3227,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/ingestion/conversion_test",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3257,7 +3257,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3714,7 +3714,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/ingestion/conversion_test",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "tag" : "$id"
 }'''),
--- a/target/_test/nextflow/test_workflows/ingestion/conversion_test/nextflow.config
+++ b/target/_test/nextflow/test_workflows/ingestion/conversion_test/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/ingestion/conversion_test'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component test the output of the integration test of the conversion workflow.'
  author = 'Jakub Majercik'
 }
--- a/target/_test/nextflow/test_workflows/multiomics/dimensionality_reduction_test/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/multiomics/dimensionality_reduction_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "dimensionality_reduction_test"
 namespace: "test_workflows/multiomics"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Kai Waldrant"
  info:
@@ -121,7 +121,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -148,11 +148,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/multiomics/dimensionality_reduction_test"
  executable: "target/_test/nextflow/test_workflows/multiomics/dimensionality_reduction_test/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -182,7 +182,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/multiomics/dimensionality_reduction_test/main.nf
+++ b/target/_test/nextflow/test_workflows/multiomics/dimensionality_reduction_test/main.nf
@@ -1,4 +1,4 @@
-// dimensionality_reduction_test v3.0.1
+// dimensionality_reduction_test v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "dimensionality_reduction_test",
  "namespace" : "test_workflows/multiomics",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Kai Waldrant",
@@ -3189,7 +3189,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3224,12 +3224,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/multiomics/dimensionality_reduction_test",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3254,7 +3254,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3709,7 +3709,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/multiomics/dimensionality_reduction_test",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "tag" : "$id"
 }'''),
--- a/target/_test/nextflow/test_workflows/multiomics/dimensionality_reduction_test/nextflow.config
+++ b/target/_test/nextflow/test_workflows/multiomics/dimensionality_reduction_test/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/multiomics/dimensionality_reduction_test'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component test the output of the integration test of dimensionality_reduction.'
  author = 'Kai Waldrant'
 }
--- a/target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "workflow_test"
 namespace: "test_workflows/multiomics/process_batches"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Kai Waldrant"
  info:
@@ -136,7 +136,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -167,11 +167,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test"
  executable: "target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -201,7 +201,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test/main.nf
+++ b/target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test/main.nf
@@ -1,4 +1,4 @@
-// workflow_test v3.0.1
+// workflow_test v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "workflow_test",
  "namespace" : "test_workflows/multiomics/process_batches",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Kai Waldrant",
@@ -3206,7 +3206,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3246,12 +3246,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3276,7 +3276,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3743,7 +3743,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/multiomics/process_batches/workflow_test",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "label" : [
    "midmem"
--- a/target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test/nextflow.config
+++ b/target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/multiomics/process_batches/workflow_test'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component tests the output of the integration test of process_batches test_wf.'
  author = 'Kai Waldrant'
 }
--- a/target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test2/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test2/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "workflow_test2"
 namespace: "test_workflows/multiomics/process_batches"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Kai Waldrant"
  info:
@@ -136,7 +136,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -167,11 +167,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test2"
  executable: "target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test2/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -201,7 +201,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test2/main.nf
+++ b/target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test2/main.nf
@@ -1,4 +1,4 @@
-// workflow_test2 v3.0.1
+// workflow_test2 v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "workflow_test2",
  "namespace" : "test_workflows/multiomics/process_batches",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Kai Waldrant",
@@ -3206,7 +3206,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3246,12 +3246,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test2",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3276,7 +3276,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3768,7 +3768,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/multiomics/process_batches/workflow_test2",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "label" : [
    "midmem"
--- a/target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test2/nextflow.config
+++ b/target/_test/nextflow/test_workflows/multiomics/process_batches/workflow_test2/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/multiomics/process_batches/workflow_test2'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component tests the output of the integration test of process_batches test_wf2.'
  author = 'Kai Waldrant'
 }
--- a/target/_test/nextflow/test_workflows/multiomics/split_h5mu_test/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/multiomics/split_h5mu_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "split_h5mu_test"
 namespace: "test_workflows/multiomics"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Kai Waldrant"
  info:
@@ -145,7 +145,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -176,11 +176,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/multiomics/split_h5mu_test"
  executable: "target/_test/nextflow/test_workflows/multiomics/split_h5mu_test/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -210,7 +210,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/multiomics/split_h5mu_test/main.nf
+++ b/target/_test/nextflow/test_workflows/multiomics/split_h5mu_test/main.nf
@@ -1,4 +1,4 @@
-// split_h5mu_test v3.0.1
+// split_h5mu_test v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "split_h5mu_test",
  "namespace" : "test_workflows/multiomics",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Kai Waldrant",
@@ -3217,7 +3217,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3257,12 +3257,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/multiomics/split_h5mu_test",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3287,7 +3287,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3775,7 +3775,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/multiomics/split_h5mu_test",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "tag" : "$id"
 }'''),
--- a/target/_test/nextflow/test_workflows/multiomics/split_h5mu_test/nextflow.config
+++ b/target/_test/nextflow/test_workflows/multiomics/split_h5mu_test/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/multiomics/split_h5mu_test'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component test the output of the integration test of split_h5mu.'
  author = 'Kai Waldrant'
 }
--- a/target/_test/nextflow/test_workflows/multiomics/split_modalities_test/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/multiomics/split_modalities_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "split_modalities_test"
 namespace: "test_workflows/multiomics"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Kai Waldrant"
  info:
@@ -145,7 +145,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -176,11 +176,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/multiomics/split_modalities_test"
  executable: "target/_test/nextflow/test_workflows/multiomics/split_modalities_test/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -210,7 +210,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/multiomics/split_modalities_test/main.nf
+++ b/target/_test/nextflow/test_workflows/multiomics/split_modalities_test/main.nf
@@ -1,4 +1,4 @@
-// split_modalities_test v3.0.1
+// split_modalities_test v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "split_modalities_test",
  "namespace" : "test_workflows/multiomics",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Kai Waldrant",
@@ -3217,7 +3217,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3257,12 +3257,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/multiomics/split_modalities_test",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3287,7 +3287,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3777,7 +3777,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/multiomics/split_modalities_test",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "tag" : "$id"
 }'''),
--- a/target/_test/nextflow/test_workflows/multiomics/split_modalities_test/nextflow.config
+++ b/target/_test/nextflow/test_workflows/multiomics/split_modalities_test/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/multiomics/split_modalities_test'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component test the output of the integration test of split_modalities.'
  author = 'Kai Waldrant'
 }
--- a/target/_test/nextflow/test_workflows/qc/qc_test/.config.vsh.yaml
+++ b/target/_test/nextflow/test_workflows/qc/qc_test/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "qc_test"
 namespace: "test_workflows/qc"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Jakub Majercik"
  info:
@@ -134,7 +134,7 @@ engines:
  id: "docker"
  image: "python:3.12-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -165,11 +165,11 @@ build_info:
  output: "target/_test/nextflow/test_workflows/qc/qc_test"
  executable: "target/_test/nextflow/test_workflows/qc/qc_test/main.nf"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -199,7 +199,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/_test/nextflow/test_workflows/qc/qc_test/main.nf
+++ b/target/_test/nextflow/test_workflows/qc/qc_test/main.nf
@@ -1,4 +1,4 @@
-// qc_test v3.0.1
+// qc_test v3.0.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
  "config": processConfig(readJsonBlob('''{
  "name" : "qc_test",
  "namespace" : "test_workflows/qc",
-  "version" : "v3.0.1",
+  "version" : "v3.0.2",
  "authors" : [
    {
      "name" : "Jakub Majercik",
@@ -3205,7 +3205,7 @@ meta = [
      "id" : "docker",
      "image" : "python:3.12-slim",
      "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v3.0.1",
+      "target_tag" : "v3.0.2",
      "namespace_separator" : "/",
      "setup" : [
        {
@@ -3245,12 +3245,12 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/_test/nextflow/test_workflows/qc/qc_test",
    "viash_version" : "0.9.4",
-    "git_commit" : "5a72b308876ca0b755a3a04043e89bdacea3aa26",
+    "git_commit" : "d8755f49fba93566e25f67521dc681f083834ec3",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline"
  },
  "package_config" : {
    "name" : "openpipeline",
-    "version" : "v3.0.1",
+    "version" : "v3.0.2",
    "summary" : "Best-practice workflows for single-cell multi-omics analyses.\n",
    "description" : "OpenPipelines are extensible single cell analysis pipelines for reproducible and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\nIn terms of workflows, the following has been made available, but keep in mind that\nindividual tools and functionality can be executed as standalone components as well.\n\n  * Demultiplexing: conversion of raw sequencing data to FASTQ objects.\n  * Ingestion: Read mapping and generating a count matrix.\n  * Single sample processing: cell filtering and doublet detection.\n  * Multisample processing: Count transformation, normalization, QC metric calulations.\n  * Integration: Clustering, integration and batch correction using single and multimodal methods.\n  * Downstream analysis workflows\n",
    "info" : {
@@ -3275,7 +3275,7 @@ meta = [
      ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
      ".engines += { type: \\"native\\" }",
      ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+      ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
    ],
    "keywords" : [
      "single-cell",
@@ -3784,7 +3784,7 @@ meta["defaults"] = [
  "container" : {
    "registry" : "images.viash-hub.com",
    "image" : "vsh/openpipeline/test_workflows/qc/qc_test",
-    "tag" : "v3.0.1"
+    "tag" : "v3.0.2"
  },
  "label" : [
    "midmem",
--- a/target/_test/nextflow/test_workflows/qc/qc_test/nextflow.config
+++ b/target/_test/nextflow/test_workflows/qc/qc_test/nextflow.config
@@ -2,7 +2,7 @@ manifest {
  name = 'test_workflows/qc/qc_test'
  mainScript = 'main.nf'
  nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.1'
+  version = 'v3.0.2'
  description = 'This component test the output of the integration test of the QC workflow.'
  author = 'Jakub Majercik'
 }
--- a/target/executable/annotate/celltypist/.config.vsh.yaml
+++ b/target/executable/annotate/celltypist/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "celltypist"
 namespace: "annotate"
-version: "v3.0.1"
+version: "v3.0.2"
 authors:
 - name: "Jakub Majercik"
  roles:
@@ -372,7 +372,7 @@ engines:
  id: "docker"
  image: "python:3.10-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v3.0.1"
+  target_tag: "v3.0.2"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -422,11 +422,11 @@ build_info:
  output: "target/executable/annotate/celltypist"
  executable: "target/executable/annotate/celltypist/celltypist"
  viash_version: "0.9.4"
-  git_commit: "5a72b308876ca0b755a3a04043e89bdacea3aa26"
+  git_commit: "d8755f49fba93566e25f67521dc681f083834ec3"
  git_remote: "https://github.com/openpipelines-bio/openpipeline"
 package_config:
  name: "openpipeline"
-  version: "v3.0.1"
+  version: "v3.0.2"
  summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
  description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
    \ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -456,7 +456,7 @@ package_config:
    )'"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v3.0.2'"
  keywords:
  - "single-cell"
  - "multimodal"
--- a/target/executable/annotate/celltypist/celltypist
+++ b/target/executable/annotate/celltypist/celltypist
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# celltypist v3.0.1
+# celltypist v3.0.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -465,10 +465,10 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Jakub Majercik, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component annotate celltypist"
-LABEL org.opencontainers.image.created="2025-12-22T14:27:35Z"
+LABEL org.opencontainers.image.created="2026-02-04T12:39:31Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="5a72b308876ca0b755a3a04043e89bdacea3aa26"
-LABEL org.opencontainers.image.version="v3.0.1"
+LABEL org.opencontainers.image.revision="d8755f49fba93566e25f67521dc681f083834ec3"
+LABEL org.opencontainers.image.version="v3.0.2"

 VIASHDOCKER
  fi
@@ -585,7 +585,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "celltypist v3.0.1"
+  echo "celltypist v3.0.2"
  echo ""
  echo "Automated cell type annotation tool for scRNA-seq datasets on the basis of"
  echo "logistic regression classifiers optimised by the stochastic gradient descent"
@@ -769,7 +769,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "celltypist v3.0.1"
+            echo "celltypist v3.0.2"
            exit
            ;;
        --input)
@@ -1091,7 +1091,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/annotate/celltypist:v3.0.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/annotate/celltypist:v3.0.2'
  fi

  # print dockerfile
--- a/Show More
+++ b/Show More