Build branch openpipeline_qc/v0.2 with version v0.2.2 to openpipeline_qc on branch v0.2 (9b81d31)

Build pipeline: openpipelines-bio.openpipeline-qc.v0.2.2-vcq67

Source commit: 9b81d310d0

Source message: update version

CHANGELOG.MD

@@ -4,6 +4,12 @@
 
 * Surface updated CosMx and Visium features.
 
+# openpipeline_qc 0.2.2
+
+## BUG FIX
+
+* `src/ingestion_qc/h5mu_to_qc_json`: Use float32 instead of float16 for CosMx staining metrics to prevent overflow to infinity (PR #17).
+
 # openpipeline_qc 0.2.0
 
 ## NEW FEATURES

_viash.yaml

@@ -1,5 +1,5 @@
 viash_version: 0.9.4
-version: v0.2.1
+version: v0.2.2
 source: src
 target: target
 name: openpipeline_qc

src/ingestion_qc/h5mu_to_qc_json/script.py

@@ -307,7 +307,7 @@ def format_cosmx_columns(mod_obs):
         if key in mod_obs:
             if not pd.api.types.is_float_dtype(mod_obs[key]):
                 try:
-                    mod_obs[key] = mod_obs[key].astype("float16")
+                    mod_obs[key] = mod_obs[key].astype("float32")
                 except ValueError:
                     logger.warning(f"Could not convert column {key} to a float dtype.")
 

target/_private/executable/ingestion_qc/h5mu_to_qc_json/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "h5mu_to_qc_json"
 namespace: "ingestion_qc"
-version: "v0.2.1"
+version: "v0.2.2"
 authors:
 - name: "Jakub Majercik"
   roles:
@@ -488,7 +488,7 @@ engines:
   id: "docker"
   image: "python:3.12-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2.1"
+  target_tag: "v0.2.2"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -527,11 +527,11 @@ build_info:
   output: "target/_private/executable/ingestion_qc/h5mu_to_qc_json"
   executable: "target/_private/executable/ingestion_qc/h5mu_to_qc_json/h5mu_to_qc_json"
   viash_version: "0.9.4"
-  git_commit: "240a6de6240860a98d81e126416da9e68bf6f159"
+  git_commit: "9b81d310d031b120755e39001cc40f8ec51bc7c2"
   git_remote: "https://github.com/openpipelines-bio/openpipeline_qc"
 package_config:
   name: "openpipeline_qc"
-  version: "v0.2.1"
+  version: "v0.2.2"
   info:
     test_resources:
     - type: "s3"
@@ -556,7 +556,7 @@ package_config:
     )'"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.2.2'"
   organization: "vsh"
   links:
     repository: "https://github.com/openpipelines-bio/openpipeline_qc"

target/_private/executable/ingestion_qc/h5mu_to_qc_json/h5mu_to_qc_json

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# h5mu_to_qc_json v0.2.1
+# h5mu_to_qc_json v0.2.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -461,10 +461,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Jakub Majercik, Dorien Roosen, Robrecht Cannoodt, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component ingestion_qc h5mu_to_qc_json"
-LABEL org.opencontainers.image.created="2026-02-02T17:20:22Z"
+LABEL org.opencontainers.image.created="2026-02-03T16:37:26Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_qc"
-LABEL org.opencontainers.image.revision="240a6de6240860a98d81e126416da9e68bf6f159"
-LABEL org.opencontainers.image.version="v0.2.1"
+LABEL org.opencontainers.image.revision="9b81d310d031b120755e39001cc40f8ec51bc7c2"
+LABEL org.opencontainers.image.version="v0.2.2"
 
 VIASHDOCKER
   fi
@@ -581,7 +581,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "h5mu_to_qc_json v0.2.1"
+  echo "h5mu_to_qc_json v0.2.2"
   echo ""
   echo "Takes H5MU files that have been ingested by CellRanger, Xenium or CosMx and"
   echo "processed by the QC workflow, and generates:"
@@ -789,7 +789,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "h5mu_to_qc_json v0.2.1"
+            echo "h5mu_to_qc_json v0.2.2"
             exit
             ;;
         --input)
@@ -1236,7 +1236,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_qc/ingestion_qc/h5mu_to_qc_json:v0.2.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_qc/ingestion_qc/h5mu_to_qc_json:v0.2.2'
   fi
 
   # print dockerfile
@@ -1970,7 +1970,7 @@ def format_cosmx_columns(mod_obs):
         if key in mod_obs:
             if not pd.api.types.is_float_dtype(mod_obs[key]):
                 try:
-                    mod_obs[key] = mod_obs[key].astype("float16")
+                    mod_obs[key] = mod_obs[key].astype("float32")
                 except ValueError:
                     logger.warning(f"Could not convert column {key} to a float dtype.")
 

target/_private/nextflow/ingestion_qc/h5mu_to_qc_json/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "h5mu_to_qc_json"
 namespace: "ingestion_qc"
-version: "v0.2.1"
+version: "v0.2.2"
 authors:
 - name: "Jakub Majercik"
   roles:
@@ -488,7 +488,7 @@ engines:
   id: "docker"
   image: "python:3.12-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2.1"
+  target_tag: "v0.2.2"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -527,11 +527,11 @@ build_info:
   output: "target/_private/nextflow/ingestion_qc/h5mu_to_qc_json"
   executable: "target/_private/nextflow/ingestion_qc/h5mu_to_qc_json/main.nf"
   viash_version: "0.9.4"
-  git_commit: "240a6de6240860a98d81e126416da9e68bf6f159"
+  git_commit: "9b81d310d031b120755e39001cc40f8ec51bc7c2"
   git_remote: "https://github.com/openpipelines-bio/openpipeline_qc"
 package_config:
   name: "openpipeline_qc"
-  version: "v0.2.1"
+  version: "v0.2.2"
   info:
     test_resources:
     - type: "s3"
@@ -556,7 +556,7 @@ package_config:
     )'"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.2.2'"
   organization: "vsh"
   links:
     repository: "https://github.com/openpipelines-bio/openpipeline_qc"

target/_private/nextflow/ingestion_qc/h5mu_to_qc_json/main.nf

@@ -1,4 +1,4 @@
-// h5mu_to_qc_json v0.2.1
+// h5mu_to_qc_json v0.2.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3038,7 +3038,7 @@ meta = [
   "config": processConfig(readJsonBlob('''{
   "name" : "h5mu_to_qc_json",
   "namespace" : "ingestion_qc",
-  "version" : "v0.2.1",
+  "version" : "v0.2.2",
   "authors" : [
     {
       "name" : "Jakub Majercik",
@@ -3657,7 +3657,7 @@ meta = [
       "id" : "docker",
       "image" : "python:3.12-slim",
       "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.2.1",
+      "target_tag" : "v0.2.2",
       "namespace_separator" : "/",
       "setup" : [
         {
@@ -3712,12 +3712,12 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/_private/nextflow/ingestion_qc/h5mu_to_qc_json",
     "viash_version" : "0.9.4",
-    "git_commit" : "240a6de6240860a98d81e126416da9e68bf6f159",
+    "git_commit" : "9b81d310d031b120755e39001cc40f8ec51bc7c2",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline_qc"
   },
   "package_config" : {
     "name" : "openpipeline_qc",
-    "version" : "v0.2.1",
+    "version" : "v0.2.2",
     "info" : {
       "test_resources" : [
         {
@@ -3748,7 +3748,7 @@ meta = [
       ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n.resources += {path: '/src/configs/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
       ".engines += { type: \\"native\\" }",
       ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.2.1'"
+      ".engines[.type == 'docker'].target_tag := 'v0.2.2'"
     ],
     "organization" : "vsh",
     "links" : {
@@ -4085,7 +4085,7 @@ def format_cosmx_columns(mod_obs):
         if key in mod_obs:
             if not pd.api.types.is_float_dtype(mod_obs[key]):
                 try:
-                    mod_obs[key] = mod_obs[key].astype("float16")
+                    mod_obs[key] = mod_obs[key].astype("float32")
                 except ValueError:
                     logger.warning(f"Could not convert column {key} to a float dtype.")
 
@@ -4642,7 +4642,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "images.viash-hub.com",
     "image" : "vsh/openpipeline_qc/ingestion_qc/h5mu_to_qc_json",
-    "tag" : "v0.2.1"
+    "tag" : "v0.2.2"
   },
   "label" : [
     "midmem",

target/_private/nextflow/ingestion_qc/h5mu_to_qc_json/nextflow.config

@@ -2,7 +2,7 @@ manifest {
   name = 'ingestion_qc/h5mu_to_qc_json'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.2.1'
+  version = 'v0.2.2'
   description = 'Takes H5MU files that have been ingested by CellRanger, Xenium or CosMx and processed by the QC workflow, and generates:\n- A JSON file that contains the combined data for the QC report\n- A JSON file that defines the layout and structure of the QC report\n'
   author = 'Jakub Majercik, Dorien Roosen, Robrecht Cannoodt, Weiwei Schultz'
 }

target/executable/ingestion_qc/detect_ingestion_method/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "detect_ingestion_method"
 namespace: "ingestion_qc"
-version: "v0.2.1"
+version: "v0.2.2"
 authors:
 - name: "Dorien Roosen"
   roles:
@@ -190,7 +190,7 @@ engines:
   id: "docker"
   image: "python:3.12-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2.1"
+  target_tag: "v0.2.2"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -229,11 +229,11 @@ build_info:
   output: "target/executable/ingestion_qc/detect_ingestion_method"
   executable: "target/executable/ingestion_qc/detect_ingestion_method/detect_ingestion_method"
   viash_version: "0.9.4"
-  git_commit: "240a6de6240860a98d81e126416da9e68bf6f159"
+  git_commit: "9b81d310d031b120755e39001cc40f8ec51bc7c2"
   git_remote: "https://github.com/openpipelines-bio/openpipeline_qc"
 package_config:
   name: "openpipeline_qc"
-  version: "v0.2.1"
+  version: "v0.2.2"
   info:
     test_resources:
     - type: "s3"
@@ -258,7 +258,7 @@ package_config:
     )'"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.2.2'"
   organization: "vsh"
   links:
     repository: "https://github.com/openpipelines-bio/openpipeline_qc"

target/executable/ingestion_qc/detect_ingestion_method/detect_ingestion_method

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# detect_ingestion_method v0.2.1
+# detect_ingestion_method v0.2.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -459,10 +459,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component ingestion_qc detect_ingestion_method"
-LABEL org.opencontainers.image.created="2026-02-02T17:20:23Z"
+LABEL org.opencontainers.image.created="2026-02-03T16:37:27Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_qc"
-LABEL org.opencontainers.image.revision="240a6de6240860a98d81e126416da9e68bf6f159"
-LABEL org.opencontainers.image.version="v0.2.1"
+LABEL org.opencontainers.image.revision="9b81d310d031b120755e39001cc40f8ec51bc7c2"
+LABEL org.opencontainers.image.version="v0.2.2"
 
 VIASHDOCKER
   fi
@@ -579,7 +579,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "detect_ingestion_method v0.2.1"
+  echo "detect_ingestion_method v0.2.2"
   echo ""
   echo "Detects the ingestion method of a dataset."
   echo "Currently detects either 10X CellRanger Multi, 10X Xenium or Nanostring CosMx,"
@@ -656,7 +656,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "detect_ingestion_method v0.2.1"
+            echo "detect_ingestion_method v0.2.2"
             exit
             ;;
         --input)
@@ -791,7 +791,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_qc/ingestion_qc/detect_ingestion_method:v0.2.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_qc/ingestion_qc/detect_ingestion_method:v0.2.2'
   fi
 
   # print dockerfile

target/executable/ingestion_qc/generate_html/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "generate_html"
 namespace: "ingestion_qc"
-version: "v0.2.1"
+version: "v0.2.2"
 authors:
 - name: "Jakub Majercik"
   roles:
@@ -209,7 +209,7 @@ engines:
   id: "docker"
   image: "node:latest"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2.1"
+  target_tag: "v0.2.2"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -231,11 +231,11 @@ build_info:
   output: "target/executable/ingestion_qc/generate_html"
   executable: "target/executable/ingestion_qc/generate_html/generate_html"
   viash_version: "0.9.4"
-  git_commit: "240a6de6240860a98d81e126416da9e68bf6f159"
+  git_commit: "9b81d310d031b120755e39001cc40f8ec51bc7c2"
   git_remote: "https://github.com/openpipelines-bio/openpipeline_qc"
 package_config:
   name: "openpipeline_qc"
-  version: "v0.2.1"
+  version: "v0.2.2"
   info:
     test_resources:
     - type: "s3"
@@ -260,7 +260,7 @@ package_config:
     )'"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.2.2'"
   organization: "vsh"
   links:
     repository: "https://github.com/openpipelines-bio/openpipeline_qc"

target/executable/ingestion_qc/generate_html/generate_html

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# generate_html v0.2.1
+# generate_html v0.2.2
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -461,10 +461,10 @@ RUN cd /opt && git clone -b v0.2.1 https://github.com/openpipelines-bio/siqc.git
 
 LABEL org.opencontainers.image.authors="Jakub Majercik, Dorien Roosen, Robrecht Cannoodt, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component ingestion_qc generate_html"
-LABEL org.opencontainers.image.created="2026-02-02T17:20:23Z"
+LABEL org.opencontainers.image.created="2026-02-03T16:37:27Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_qc"
-LABEL org.opencontainers.image.revision="240a6de6240860a98d81e126416da9e68bf6f159"
-LABEL org.opencontainers.image.version="v0.2.1"
+LABEL org.opencontainers.image.revision="9b81d310d031b120755e39001cc40f8ec51bc7c2"
+LABEL org.opencontainers.image.version="v0.2.2"
 
 VIASHDOCKER
   fi
@@ -581,7 +581,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "generate_html v0.2.1"
+  echo "generate_html v0.2.2"
   echo ""
   echo "Generate an HTML report from the QC metrics"
   echo ""
@@ -649,7 +649,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "generate_html v0.2.1"
+            echo "generate_html v0.2.2"
             exit
             ;;
         --input_data)
@@ -773,7 +773,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_qc/ingestion_qc/generate_html:v0.2.1'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_qc/ingestion_qc/generate_html:v0.2.2'
   fi
 
   # print dockerfile

target/nextflow/ingestion_qc/detect_ingestion_method/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "detect_ingestion_method"
 namespace: "ingestion_qc"
-version: "v0.2.1"
+version: "v0.2.2"
 authors:
 - name: "Dorien Roosen"
   roles:
@@ -190,7 +190,7 @@ engines:
   id: "docker"
   image: "python:3.12-slim"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2.1"
+  target_tag: "v0.2.2"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -229,11 +229,11 @@ build_info:
   output: "target/nextflow/ingestion_qc/detect_ingestion_method"
   executable: "target/nextflow/ingestion_qc/detect_ingestion_method/main.nf"
   viash_version: "0.9.4"
-  git_commit: "240a6de6240860a98d81e126416da9e68bf6f159"
+  git_commit: "9b81d310d031b120755e39001cc40f8ec51bc7c2"
   git_remote: "https://github.com/openpipelines-bio/openpipeline_qc"
 package_config:
   name: "openpipeline_qc"
-  version: "v0.2.1"
+  version: "v0.2.2"
   info:
     test_resources:
     - type: "s3"
@@ -258,7 +258,7 @@ package_config:
     )'"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.2.2'"
   organization: "vsh"
   links:
     repository: "https://github.com/openpipelines-bio/openpipeline_qc"

target/nextflow/ingestion_qc/detect_ingestion_method/main.nf

@@ -1,4 +1,4 @@
-// detect_ingestion_method v0.2.1
+// detect_ingestion_method v0.2.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3036,7 +3036,7 @@ meta = [
   "config": processConfig(readJsonBlob('''{
   "name" : "detect_ingestion_method",
   "namespace" : "ingestion_qc",
-  "version" : "v0.2.1",
+  "version" : "v0.2.2",
   "authors" : [
     {
       "name" : "Dorien Roosen",
@@ -3290,7 +3290,7 @@ meta = [
       "id" : "docker",
       "image" : "python:3.12-slim",
       "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.2.1",
+      "target_tag" : "v0.2.2",
       "namespace_separator" : "/",
       "setup" : [
         {
@@ -3345,12 +3345,12 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/ingestion_qc/detect_ingestion_method",
     "viash_version" : "0.9.4",
-    "git_commit" : "240a6de6240860a98d81e126416da9e68bf6f159",
+    "git_commit" : "9b81d310d031b120755e39001cc40f8ec51bc7c2",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline_qc"
   },
   "package_config" : {
     "name" : "openpipeline_qc",
-    "version" : "v0.2.1",
+    "version" : "v0.2.2",
     "info" : {
       "test_resources" : [
         {
@@ -3381,7 +3381,7 @@ meta = [
       ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n.resources += {path: '/src/configs/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
       ".engines += { type: \\"native\\" }",
       ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.2.1'"
+      ".engines[.type == 'docker'].target_tag := 'v0.2.2'"
     ],
     "organization" : "vsh",
     "links" : {
@@ -3872,7 +3872,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "images.viash-hub.com",
     "image" : "vsh/openpipeline_qc/ingestion_qc/detect_ingestion_method",
-    "tag" : "v0.2.1"
+    "tag" : "v0.2.2"
   },
   "label" : [
     "lowmem",

target/nextflow/ingestion_qc/detect_ingestion_method/nextflow.config

@@ -2,7 +2,7 @@ manifest {
   name = 'ingestion_qc/detect_ingestion_method'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.2.1'
+  version = 'v0.2.2'
   description = 'Detects the ingestion method of a dataset.\nCurrently detects either 10X CellRanger Multi, 10X Xenium or Nanostring CosMx, but can be extended to other technologies upon request.\n'
   author = 'Dorien Roosen, Weiwei Schultz'
 }

target/nextflow/ingestion_qc/generate_html/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "generate_html"
 namespace: "ingestion_qc"
-version: "v0.2.1"
+version: "v0.2.2"
 authors:
 - name: "Jakub Majercik"
   roles:
@@ -209,7 +209,7 @@ engines:
   id: "docker"
   image: "node:latest"
   target_registry: "images.viash-hub.com"
-  target_tag: "v0.2.1"
+  target_tag: "v0.2.2"
   namespace_separator: "/"
   setup:
   - type: "apt"
@@ -231,11 +231,11 @@ build_info:
   output: "target/nextflow/ingestion_qc/generate_html"
   executable: "target/nextflow/ingestion_qc/generate_html/main.nf"
   viash_version: "0.9.4"
-  git_commit: "240a6de6240860a98d81e126416da9e68bf6f159"
+  git_commit: "9b81d310d031b120755e39001cc40f8ec51bc7c2"
   git_remote: "https://github.com/openpipelines-bio/openpipeline_qc"
 package_config:
   name: "openpipeline_qc"
-  version: "v0.2.1"
+  version: "v0.2.2"
   info:
     test_resources:
     - type: "s3"
@@ -260,7 +260,7 @@ package_config:
     )'"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.2.2'"
   organization: "vsh"
   links:
     repository: "https://github.com/openpipelines-bio/openpipeline_qc"

target/nextflow/ingestion_qc/generate_html/main.nf

@@ -1,4 +1,4 @@
-// generate_html v0.2.1
+// generate_html v0.2.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3038,7 +3038,7 @@ meta = [
   "config": processConfig(readJsonBlob('''{
   "name" : "generate_html",
   "namespace" : "ingestion_qc",
-  "version" : "v0.2.1",
+  "version" : "v0.2.2",
   "authors" : [
     {
       "name" : "Jakub Majercik",
@@ -3330,7 +3330,7 @@ meta = [
       "id" : "docker",
       "image" : "node:latest",
       "target_registry" : "images.viash-hub.com",
-      "target_tag" : "v0.2.1",
+      "target_tag" : "v0.2.2",
       "namespace_separator" : "/",
       "setup" : [
         {
@@ -3359,12 +3359,12 @@ meta = [
     "engine" : "docker|native",
     "output" : "/workdir/root/repo/target/nextflow/ingestion_qc/generate_html",
     "viash_version" : "0.9.4",
-    "git_commit" : "240a6de6240860a98d81e126416da9e68bf6f159",
+    "git_commit" : "9b81d310d031b120755e39001cc40f8ec51bc7c2",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline_qc"
   },
   "package_config" : {
     "name" : "openpipeline_qc",
-    "version" : "v0.2.1",
+    "version" : "v0.2.2",
     "info" : {
       "test_resources" : [
         {
@@ -3395,7 +3395,7 @@ meta = [
       ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n.resources += {path: '/src/configs/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
       ".engines += { type: \\"native\\" }",
       ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.2.1'"
+      ".engines[.type == 'docker'].target_tag := 'v0.2.2'"
     ],
     "organization" : "vsh",
     "links" : {
@@ -3830,7 +3830,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "images.viash-hub.com",
     "image" : "vsh/openpipeline_qc/ingestion_qc/generate_html",
-    "tag" : "v0.2.1"
+    "tag" : "v0.2.2"
   },
   "label" : [
     "lowmem",

target/nextflow/ingestion_qc/generate_html/nextflow.config

@@ -2,7 +2,7 @@ manifest {
   name = 'ingestion_qc/generate_html'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.2.1'
+  version = 'v0.2.2'
   description = 'Generate an HTML report from the QC metrics'
   author = 'Jakub Majercik, Dorien Roosen, Robrecht Cannoodt, Weiwei Schultz'
 }

target/nextflow/workflows/generate_qc_report/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "generate_qc_report"
 namespace: "workflows"
-version: "v0.2.1"
+version: "v0.2.2"
 authors:
 - name: "Jakub Majercik"
   roles:
@@ -465,7 +465,7 @@ build_info:
   output: "target/nextflow/workflows/generate_qc_report"
   executable: "target/nextflow/workflows/generate_qc_report/main.nf"
   viash_version: "0.9.4"
-  git_commit: "240a6de6240860a98d81e126416da9e68bf6f159"
+  git_commit: "9b81d310d031b120755e39001cc40f8ec51bc7c2"
   git_remote: "https://github.com/openpipelines-bio/openpipeline_qc"
   dependencies:
   - "target/dependencies/vsh/vsh/openpipeline/v4.0.0/nextflow/metadata/add_id"
@@ -476,7 +476,7 @@ build_info:
   - "target/dependencies/vsh/vsh/craftbox/v0.2.0/nextflow/move_files_to_directory"
 package_config:
   name: "openpipeline_qc"
-  version: "v0.2.1"
+  version: "v0.2.2"
   info:
     test_resources:
     - type: "s3"
@@ -501,7 +501,7 @@ package_config:
     )'"
   - ".engines += { type: \"native\" }"
   - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.2.1'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.2.2'"
   organization: "vsh"
   links:
     repository: "https://github.com/openpipelines-bio/openpipeline_qc"

target/nextflow/workflows/generate_qc_report/main.nf

@@ -1,4 +1,4 @@
-// generate_qc_report v0.2.1
+// generate_qc_report v0.2.2
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3038,7 +3038,7 @@ meta = [
   "config": processConfig(readJsonBlob('''{
   "name" : "generate_qc_report",
   "namespace" : "workflows",
-  "version" : "v0.2.1",
+  "version" : "v0.2.2",
   "authors" : [
     {
       "name" : "Jakub Majercik",
@@ -3642,12 +3642,12 @@ meta = [
     "engine" : "native",
     "output" : "/workdir/root/repo/target/nextflow/workflows/generate_qc_report",
     "viash_version" : "0.9.4",
-    "git_commit" : "240a6de6240860a98d81e126416da9e68bf6f159",
+    "git_commit" : "9b81d310d031b120755e39001cc40f8ec51bc7c2",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline_qc"
   },
   "package_config" : {
     "name" : "openpipeline_qc",
-    "version" : "v0.2.1",
+    "version" : "v0.2.2",
     "info" : {
       "test_resources" : [
         {
@@ -3678,7 +3678,7 @@ meta = [
       ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n.resources += {path: '/src/configs/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
       ".engines += { type: \\"native\\" }",
       ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
-      ".engines[.type == 'docker'].target_tag := 'v0.2.1'"
+      ".engines[.type == 'docker'].target_tag := 'v0.2.2'"
     ],
     "organization" : "vsh",
     "links" : {

target/nextflow/workflows/generate_qc_report/nextflow.config

@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/generate_qc_report'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = 'v0.2.1'
+  version = 'v0.2.2'
   description = 'Run the ingestion QC report generation'
   author = 'Jakub Majercik, Dorien Roosen, Robrecht Cannoodt, Weiwei Schultz'
 }