CHANGELOG.md

# openpipeline_spatial 0.1.0

## NEW FUNCTIONALITY

* `filter/subset_cosmx`: Added a component to subset COSMX data (PR #3, PR #9).

* `convert/from_cosmx_to_h5mu`: Added converter component for COSMX data (PR #3, PR #9).

* `mapping/spaceranger_count`: Added a spaceranger count component (PR #2).

* `convert/from_spatialdata_to_h5mu`, `convert/from_xenium_to_spatialdata`, `convert/from_xenium_to_h5mu`: Added converter components for xenium data (PR #1, #10).

* `convert/from_xenium_to_spatialexperiment`, `convert/from_cosmx_to_spatialexperiment`: Added converter components for Xenium or CosMx data to SpatialExperiment objects (PR #9).

* `convert/from_cells2stats_to_h5mu`: Added a component to convert data resulting from Aviti Teton sequencers processed by Cells2Stats into an H5MU file (PR #15).

* `workflows/qc/qc`: Added a pipeline for calculating qc metrics of spatial omics samples (PR #5).

* `workflows/multiomics/spatial_process_samples`: Added a pipeline to pre-process multiple spatial omics samples (PR #7).

* `convert/from_h5mu_to_spatialexperiment`: Added converter component for H5MU data to SpatialExperiment objects (PR #15).
Build branch build/main with version build_main (408cceb) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-cvdhc Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/408cceb53bfbdaeaf2029527c4c5071776db5e7b Source message: deploy: bbebaa1a26a30c55af33fa6818c12123f9fe4824 2025-08-27 16:53:33 +00:00			`# openpipeline_spatial 0.1.0`
Build branch build/main with version build_main (491efce) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-kj8js Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/491efceaaf171f50aaa1d28f690c1e974cffc456 Source message: deploy: 7f820d2607f3e1fabc0183915d1bb427715e18ae 2025-07-10 12:45:04 +00:00
			`## NEW FUNCTIONALITY`

Build branch build/main with version build_main (280b21f) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-6h5zv Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/280b21fc21238c6e7b2e76089deffdef5d979b34 Source message: deploy: 6840f3802d04d96d44f29d3cdbd31c62d144b14d 2025-07-24 15:39:45 +00:00			* `filter/subset_cosmx`: Added a component to subset COSMX data (PR #3, PR #9).
Build branch build/main with version build_main (6ae6ad1) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-h86dl Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/6ae6ad193664a12a39c23f20030ebf03d9e886c6 Source message: deploy: 00cafd63af52decfa15830ba20bc88f7a9384965 2025-07-10 14:46:24 +00:00
Build branch build/main with version build_main (280b21f) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-6h5zv Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/280b21fc21238c6e7b2e76089deffdef5d979b34 Source message: deploy: 6840f3802d04d96d44f29d3cdbd31c62d144b14d 2025-07-24 15:39:45 +00:00			* `convert/from_cosmx_to_h5mu`: Added converter component for COSMX data (PR #3, PR #9).
Build branch build/main with version build_main (6ae6ad1) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-h86dl Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/6ae6ad193664a12a39c23f20030ebf03d9e886c6 Source message: deploy: 00cafd63af52decfa15830ba20bc88f7a9384965 2025-07-10 14:46:24 +00:00
			* `mapping/spaceranger_count`: Added a spaceranger count component (PR #2).

Build branch build/main with version build_main (33c1a3a) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-rtgd7 Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/33c1a3afb0dfebceff25b0a0104bf16582611716 Source message: deploy: a14a97d04951b3cd02cf6a5dff6ee4c539b3aae8 2025-08-19 12:22:13 +00:00			* `convert/from_spatialdata_to_h5mu`, `convert/from_xenium_to_spatialdata`, `convert/from_xenium_to_h5mu`: Added converter components for xenium data (PR #1, #10).
Build branch build/main with version build_main (280b21f) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-6h5zv Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/280b21fc21238c6e7b2e76089deffdef5d979b34 Source message: deploy: 6840f3802d04d96d44f29d3cdbd31c62d144b14d 2025-07-24 15:39:45 +00:00
			* `convert/from_xenium_to_spatialexperiment`, `convert/from_cosmx_to_spatialexperiment`: Added converter components for Xenium or CosMx data to SpatialExperiment objects (PR #9).

Build branch build/main with version build_main (fab3d7d) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-kc6j9 Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/fab3d7dbd86e169a9e3b736c0d7b5bb76b22a1e8 Source message: deploy: 595b7db03ab2dd1bd0de16f217e3e634ef016c59 2025-08-21 09:14:14 +00:00			* `convert/from_cells2stats_to_h5mu`: Added a component to convert data resulting from Aviti Teton sequencers processed by Cells2Stats into an H5MU file (PR #15).

Build branch build/main with version build_main (280b21f) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-6h5zv Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/280b21fc21238c6e7b2e76089deffdef5d979b34 Source message: deploy: 6840f3802d04d96d44f29d3cdbd31c62d144b14d 2025-07-24 15:39:45 +00:00			* `workflows/qc/qc`: Added a pipeline for calculating qc metrics of spatial omics samples (PR #5).

			* `workflows/multiomics/spatial_process_samples`: Added a pipeline to pre-process multiple spatial omics samples (PR #7).
Build branch build/main with version build_main (798a0cb) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-7frxn Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/798a0cb2692eaac648662732a05bb48f951f36a0 Source message: deploy: 5fc3bcd8432928c148e8f27d6ae49214a91add67 2025-08-22 15:00:12 +00:00
			* `convert/from_h5mu_to_spatialexperiment`: Added converter component for H5MU data to SpatialExperiment objects (PR #15).