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openpipeline_spatial/CHANGELOG.md

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Build branch build/main with version build_main (491efce) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-kj8js Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/491efceaaf171f50aaa1d28f690c1e974cffc456 Source message: deploy: 7f820d2607f3e1fabc0183915d1bb427715e18ae
2025-07-10 12:45:04 +00:00
# openpipeline_spatial 0.0.0
## NEW FUNCTIONALITY
Build branch build/main with version build_main (280b21f) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-6h5zv Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/280b21fc21238c6e7b2e76089deffdef5d979b34 Source message: deploy: 6840f3802d04d96d44f29d3cdbd31c62d144b14d
2025-07-24 15:39:45 +00:00
* `filter/subset_cosmx`: Added a component to subset COSMX data (PR #3, PR #9).
Build branch build/main with version build_main (6ae6ad1) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-h86dl Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/6ae6ad193664a12a39c23f20030ebf03d9e886c6 Source message: deploy: 00cafd63af52decfa15830ba20bc88f7a9384965
2025-07-10 14:46:24 +00:00
Build branch build/main with version build_main (280b21f) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-6h5zv Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/280b21fc21238c6e7b2e76089deffdef5d979b34 Source message: deploy: 6840f3802d04d96d44f29d3cdbd31c62d144b14d
2025-07-24 15:39:45 +00:00
* `convert/from_cosmx_to_h5mu`: Added converter component for COSMX data (PR #3, PR #9).
Build branch build/main with version build_main (6ae6ad1) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-h86dl Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/6ae6ad193664a12a39c23f20030ebf03d9e886c6 Source message: deploy: 00cafd63af52decfa15830ba20bc88f7a9384965
2025-07-10 14:46:24 +00:00
* `mapping/spaceranger_count`: Added a spaceranger count component (PR #2).
Build branch build/main with version build_main (33c1a3a) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-rtgd7 Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/33c1a3afb0dfebceff25b0a0104bf16582611716 Source message: deploy: a14a97d04951b3cd02cf6a5dff6ee4c539b3aae8
2025-08-19 12:22:13 +00:00
* `convert/from_spatialdata_to_h5mu`, `convert/from_xenium_to_spatialdata`, `convert/from_xenium_to_h5mu`: Added converter components for xenium data (PR #1, #10).
Build branch build/main with version build_main (280b21f) Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-6h5zv Source commit: https://github.com/openpipelines-bio/openpipeline_spatial/commit/280b21fc21238c6e7b2e76089deffdef5d979b34 Source message: deploy: 6840f3802d04d96d44f29d3cdbd31c62d144b14d
2025-07-24 15:39:45 +00:00
* `convert/from_xenium_to_spatialexperiment`, `convert/from_cosmx_to_spatialexperiment`: Added converter components for Xenium or CosMx data to SpatialExperiment objects (PR #9).
* `workflows/qc/qc`: Added a pipeline for calculating qc metrics of spatial omics samples (PR #5).
* `workflows/multiomics/spatial_process_samples`: Added a pipeline to pre-process multiple spatial omics samples (PR #7).
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