vsh/openpipeline_spatial
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openpipeline_spatial/CHANGELOG.md
CI a606f73474 Build branch build/main with version build_main (33c1a3a) 
Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-rtgd7

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2025-08-19 12:22:13 +00:00

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openpipeline_spatial 0.0.0

NEW FUNCTIONALITY

  • filter/subset_cosmx: Added a component to subset COSMX data (PR #3, PR #9).

  • convert/from_cosmx_to_h5mu: Added converter component for COSMX data (PR #3, PR #9).

  • mapping/spaceranger_count: Added a spaceranger count component (PR #2).

  • convert/from_spatialdata_to_h5mu, convert/from_xenium_to_spatialdata, convert/from_xenium_to_h5mu: Added converter components for xenium data (PR #1, #10).

  • convert/from_xenium_to_spatialexperiment, convert/from_cosmx_to_spatialexperiment: Added converter components for Xenium or CosMx data to SpatialExperiment objects (PR #9).

  • workflows/qc/qc: Added a pipeline for calculating qc metrics of spatial omics samples (PR #5).

  • workflows/multiomics/spatial_process_samples: Added a pipeline to pre-process multiple spatial omics samples (PR #7).

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