Build branch spatial-qc with version spatial-qc (790ee27)

Build pipeline: openpipelines-bio.openpipeline-spatial.spatial-qc-gtqph Source commit: 790ee277e5 Source message: remove null
2025-07-16 13:47:39 +00:00
parent 281119ebb4
commit 2b23b12659
23 changed files with 27 additions and 30 deletions
--- a/null/run.spatial_qc.state.yaml
+++ b/null/run.spatial_qc.state.yaml
@@ -1,3 +0,0 @@
-id: run
-output: !file 'resources_test/xenium/xenium_tiny_qc.h5mu'
-
--- a/target/executable/convert/from_cosmx_to_h5mu/.config.vsh.yaml
+++ b/target/executable/convert/from_cosmx_to_h5mu/.config.vsh.yaml
@@ -235,7 +235,7 @@ build_info:
  output: "target/executable/convert/from_cosmx_to_h5mu"
  executable: "target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu"
  viash_version: "0.9.4"
-  git_commit: "66eb7bb4a87993c4fc32394a663636619090ea75"
+  git_commit: "790ee277e503df53a6203cec15cf3e0bd0515cf8"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu
+++ b/target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_cosmx_to_h5mu"
-LABEL org.opencontainers.image.created="2025-07-16T09:34:23Z"
+LABEL org.opencontainers.image.created="2025-07-16T13:35:15Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="66eb7bb4a87993c4fc32394a663636619090ea75"
+LABEL org.opencontainers.image.revision="790ee277e503df53a6203cec15cf3e0bd0515cf8"
 LABEL org.opencontainers.image.version="spatial-qc"

 VIASHDOCKER
--- a/target/executable/convert/from_spatialdata_to_h5mu/.config.vsh.yaml
+++ b/target/executable/convert/from_spatialdata_to_h5mu/.config.vsh.yaml
@@ -221,7 +221,7 @@ build_info:
  output: "target/executable/convert/from_spatialdata_to_h5mu"
  executable: "target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu"
  viash_version: "0.9.4"
-  git_commit: "66eb7bb4a87993c4fc32394a663636619090ea75"
+  git_commit: "790ee277e503df53a6203cec15cf3e0bd0515cf8"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu
+++ b/target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_spatialdata_to_h5mu"
-LABEL org.opencontainers.image.created="2025-07-16T09:34:23Z"
+LABEL org.opencontainers.image.created="2025-07-16T13:35:14Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="66eb7bb4a87993c4fc32394a663636619090ea75"
+LABEL org.opencontainers.image.revision="790ee277e503df53a6203cec15cf3e0bd0515cf8"
 LABEL org.opencontainers.image.version="spatial-qc"

 VIASHDOCKER
--- a/target/executable/convert/from_xenium_to_spatialdata/.config.vsh.yaml
+++ b/target/executable/convert/from_xenium_to_spatialdata/.config.vsh.yaml
@@ -318,7 +318,7 @@ build_info:
  output: "target/executable/convert/from_xenium_to_spatialdata"
  executable: "target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata"
  viash_version: "0.9.4"
-  git_commit: "66eb7bb4a87993c4fc32394a663636619090ea75"
+  git_commit: "790ee277e503df53a6203cec15cf3e0bd0515cf8"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata
+++ b/target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_xenium_to_spatialdata"
-LABEL org.opencontainers.image.created="2025-07-16T09:34:23Z"
+LABEL org.opencontainers.image.created="2025-07-16T13:35:15Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="66eb7bb4a87993c4fc32394a663636619090ea75"
+LABEL org.opencontainers.image.revision="790ee277e503df53a6203cec15cf3e0bd0515cf8"
 LABEL org.opencontainers.image.version="spatial-qc"

 VIASHDOCKER
--- a/target/executable/filter/subset_cosmx/.config.vsh.yaml
+++ b/target/executable/filter/subset_cosmx/.config.vsh.yaml
@@ -221,7 +221,7 @@ build_info:
  output: "target/executable/filter/subset_cosmx"
  executable: "target/executable/filter/subset_cosmx/subset_cosmx"
  viash_version: "0.9.4"
-  git_commit: "66eb7bb4a87993c4fc32394a663636619090ea75"
+  git_commit: "790ee277e503df53a6203cec15cf3e0bd0515cf8"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/filter/subset_cosmx/subset_cosmx
+++ b/target/executable/filter/subset_cosmx/subset_cosmx
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component filter subset_cosmx"
-LABEL org.opencontainers.image.created="2025-07-16T09:34:23Z"
+LABEL org.opencontainers.image.created="2025-07-16T13:35:15Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="66eb7bb4a87993c4fc32394a663636619090ea75"
+LABEL org.opencontainers.image.revision="790ee277e503df53a6203cec15cf3e0bd0515cf8"
 LABEL org.opencontainers.image.version="spatial-qc"

 VIASHDOCKER
--- a/target/executable/mapping/spaceranger_count/.config.vsh.yaml
+++ b/target/executable/mapping/spaceranger_count/.config.vsh.yaml
@@ -430,7 +430,7 @@ build_info:
  output: "target/executable/mapping/spaceranger_count"
  executable: "target/executable/mapping/spaceranger_count/spaceranger_count"
  viash_version: "0.9.4"
-  git_commit: "66eb7bb4a87993c4fc32394a663636619090ea75"
+  git_commit: "790ee277e503df53a6203cec15cf3e0bd0515cf8"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/mapping/spaceranger_count/spaceranger_count
+++ b/target/executable/mapping/spaceranger_count/spaceranger_count
@@ -453,9 +453,9 @@ apt upgrade -y && apt install -y procps && rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.authors="Jakub Majercik"
 LABEL org.opencontainers.image.description="Companion container for running component mapping spaceranger_count"
-LABEL org.opencontainers.image.created="2025-07-16T09:34:23Z"
+LABEL org.opencontainers.image.created="2025-07-16T13:35:15Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="66eb7bb4a87993c4fc32394a663636619090ea75"
+LABEL org.opencontainers.image.revision="790ee277e503df53a6203cec15cf3e0bd0515cf8"
 LABEL org.opencontainers.image.version="spatial-qc"

 VIASHDOCKER
--- a/target/nextflow/convert/from_cosmx_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/convert/from_cosmx_to_h5mu/.config.vsh.yaml
@@ -235,7 +235,7 @@ build_info:
  output: "target/nextflow/convert/from_cosmx_to_h5mu"
  executable: "target/nextflow/convert/from_cosmx_to_h5mu/main.nf"
  viash_version: "0.9.4"
-  git_commit: "66eb7bb4a87993c4fc32394a663636619090ea75"
+  git_commit: "790ee277e503df53a6203cec15cf3e0bd0515cf8"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/convert/from_cosmx_to_h5mu/main.nf
+++ b/target/nextflow/convert/from_cosmx_to_h5mu/main.nf
@@ -3341,7 +3341,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/convert/from_cosmx_to_h5mu",
    "viash_version" : "0.9.4",
-    "git_commit" : "66eb7bb4a87993c4fc32394a663636619090ea75",
+    "git_commit" : "790ee277e503df53a6203cec15cf3e0bd0515cf8",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/convert/from_spatialdata_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/convert/from_spatialdata_to_h5mu/.config.vsh.yaml
@@ -221,7 +221,7 @@ build_info:
  output: "target/nextflow/convert/from_spatialdata_to_h5mu"
  executable: "target/nextflow/convert/from_spatialdata_to_h5mu/main.nf"
  viash_version: "0.9.4"
-  git_commit: "66eb7bb4a87993c4fc32394a663636619090ea75"
+  git_commit: "790ee277e503df53a6203cec15cf3e0bd0515cf8"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/convert/from_spatialdata_to_h5mu/main.nf
+++ b/target/nextflow/convert/from_spatialdata_to_h5mu/main.nf
@@ -3333,7 +3333,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/convert/from_spatialdata_to_h5mu",
    "viash_version" : "0.9.4",
-    "git_commit" : "66eb7bb4a87993c4fc32394a663636619090ea75",
+    "git_commit" : "790ee277e503df53a6203cec15cf3e0bd0515cf8",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/convert/from_xenium_to_spatialdata/.config.vsh.yaml
+++ b/target/nextflow/convert/from_xenium_to_spatialdata/.config.vsh.yaml
@@ -318,7 +318,7 @@ build_info:
  output: "target/nextflow/convert/from_xenium_to_spatialdata"
  executable: "target/nextflow/convert/from_xenium_to_spatialdata/main.nf"
  viash_version: "0.9.4"
-  git_commit: "66eb7bb4a87993c4fc32394a663636619090ea75"
+  git_commit: "790ee277e503df53a6203cec15cf3e0bd0515cf8"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/convert/from_xenium_to_spatialdata/main.nf
+++ b/target/nextflow/convert/from_xenium_to_spatialdata/main.nf
@@ -3431,7 +3431,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/convert/from_xenium_to_spatialdata",
    "viash_version" : "0.9.4",
-    "git_commit" : "66eb7bb4a87993c4fc32394a663636619090ea75",
+    "git_commit" : "790ee277e503df53a6203cec15cf3e0bd0515cf8",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/filter/subset_cosmx/.config.vsh.yaml
+++ b/target/nextflow/filter/subset_cosmx/.config.vsh.yaml
@@ -221,7 +221,7 @@ build_info:
  output: "target/nextflow/filter/subset_cosmx"
  executable: "target/nextflow/filter/subset_cosmx/main.nf"
  viash_version: "0.9.4"
-  git_commit: "66eb7bb4a87993c4fc32394a663636619090ea75"
+  git_commit: "790ee277e503df53a6203cec15cf3e0bd0515cf8"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/filter/subset_cosmx/main.nf
+++ b/target/nextflow/filter/subset_cosmx/main.nf
@@ -3323,7 +3323,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/filter/subset_cosmx",
    "viash_version" : "0.9.4",
-    "git_commit" : "66eb7bb4a87993c4fc32394a663636619090ea75",
+    "git_commit" : "790ee277e503df53a6203cec15cf3e0bd0515cf8",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/mapping/spaceranger_count/.config.vsh.yaml
+++ b/target/nextflow/mapping/spaceranger_count/.config.vsh.yaml
@@ -430,7 +430,7 @@ build_info:
  output: "target/nextflow/mapping/spaceranger_count"
  executable: "target/nextflow/mapping/spaceranger_count/main.nf"
  viash_version: "0.9.4"
-  git_commit: "66eb7bb4a87993c4fc32394a663636619090ea75"
+  git_commit: "790ee277e503df53a6203cec15cf3e0bd0515cf8"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/mapping/spaceranger_count/main.nf
+++ b/target/nextflow/mapping/spaceranger_count/main.nf
@@ -3554,7 +3554,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/mapping/spaceranger_count",
    "viash_version" : "0.9.4",
-    "git_commit" : "66eb7bb4a87993c4fc32394a663636619090ea75",
+    "git_commit" : "790ee277e503df53a6203cec15cf3e0bd0515cf8",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/workflows/qc/spatial_qc/.config.vsh.yaml
+++ b/target/nextflow/workflows/qc/spatial_qc/.config.vsh.yaml
@@ -390,7 +390,7 @@ build_info:
  output: "target/nextflow/workflows/qc/spatial_qc"
  executable: "target/nextflow/workflows/qc/spatial_qc/main.nf"
  viash_version: "0.9.4"
-  git_commit: "66eb7bb4a87993c4fc32394a663636619090ea75"
+  git_commit: "790ee277e503df53a6203cec15cf3e0bd0515cf8"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
  dependencies:
  - "target/dependencies/github/openpipelines-bio/openpipeline/2.1.2/nextflow/workflows/qc/qc"
--- a/target/nextflow/workflows/qc/spatial_qc/main.nf
+++ b/target/nextflow/workflows/qc/spatial_qc/main.nf
@@ -3511,7 +3511,7 @@ meta = [
    "engine" : "native",
    "output" : "/workdir/root/repo/target/nextflow/workflows/qc/spatial_qc",
    "viash_version" : "0.9.4",
-    "git_commit" : "66eb7bb4a87993c4fc32394a663636619090ea75",
+    "git_commit" : "790ee277e503df53a6203cec15cf3e0bd0515cf8",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {