Build branch v0.1 with version v0.1 (420b610)

Build pipeline: openpipelines-bio.openpipeline-spatial.v0.1-rwpq2

Source commit: 420b610b04

Source message: Merge pull request #18 from openpipelines-bio/update-op-dependencies

Update OP dependency version
This commit is contained in:
CI
2025-08-25 12:10:43 +00:00
parent 21602a0829
commit e3029375b3
364 changed files with 3095 additions and 18895 deletions

View File

@@ -1,6 +1,6 @@
name: "from_xenium_to_h5mu"
namespace: "convert"
version: "v0.1.0"
version: "v0.1"
authors:
- name: "Dorien Roosen"
roles:
@@ -198,7 +198,7 @@ engines:
id: "docker"
image: "python:3.12-slim"
target_registry: "images.viash-hub.com"
target_tag: "v0.1.0"
target_tag: "v0.1"
namespace_separator: "/"
setup:
- type: "apt"
@@ -233,11 +233,11 @@ build_info:
output: "target/executable/convert/from_xenium_to_h5mu"
executable: "target/executable/convert/from_xenium_to_h5mu/from_xenium_to_h5mu"
viash_version: "0.9.4"
git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
git_commit: "420b610b045c138f07475a1af39529f233d9af5a"
git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
package_config:
name: "openpipeline_spatial"
version: "v0.1.0"
version: "v0.1"
info:
test_resources:
- type: "s3"
@@ -257,7 +257,7 @@ package_config:
)'"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.1.0'"
- ".engines[.type == 'docker'].target_tag := 'v0.1'"
organization: "vsh"
links:
repository: "https://github.com/openpipelines-bio/openpipeline_spatial"

View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# from_xenium_to_h5mu v0.1.0
# from_xenium_to_h5mu v0.1
#
# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -458,10 +458,10 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component convert from_xenium_to_h5mu"
LABEL org.opencontainers.image.created="2025-08-25T08:17:05Z"
LABEL org.opencontainers.image.created="2025-08-25T11:47:09Z"
LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192"
LABEL org.opencontainers.image.version="v0.1.0"
LABEL org.opencontainers.image.revision="420b610b045c138f07475a1af39529f233d9af5a"
LABEL org.opencontainers.image.version="v0.1"
VIASHDOCKER
fi
@@ -578,7 +578,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "from_xenium_to_h5mu v0.1.0"
echo "from_xenium_to_h5mu v0.1"
echo ""
echo "Converts the output from Xenium to a single .h5mu file, where the count matrix"
echo "is written to the \`rna\` modality."
@@ -670,7 +670,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "from_xenium_to_h5mu v0.1.0"
echo "from_xenium_to_h5mu v0.1"
exit
;;
--input)
@@ -839,7 +839,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_spatial/convert/from_xenium_to_h5mu:v0.1.0'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_spatial/convert/from_xenium_to_h5mu:v0.1'
fi
# print dockerfile