Build branch v0.1 with version v0.1.0 (9631070)

Build pipeline: openpipelines-bio.openpipeline-spatial.v0.1-n9mlk Source commit: 9631070888 Source message: Revert "update op dependency" This reverts commit 217efc9dd105375ecafbf0895bedb532c0aa7d10.
2025-08-25 08:40:00 +00:00
parent d102f5567c
commit 21602a0829
44 changed files with 54 additions and 54 deletions
--- a/target/executable/convert/from_cells2stats_to_h5mu/.config.vsh.yaml
+++ b/target/executable/convert/from_cells2stats_to_h5mu/.config.vsh.yaml
@@ -290,7 +290,7 @@ build_info:
  output: "target/executable/convert/from_cells2stats_to_h5mu"
  executable: "target/executable/convert/from_cells2stats_to_h5mu/from_cells2stats_to_h5mu"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/convert/from_cells2stats_to_h5mu/from_cells2stats_to_h5mu
+++ b/target/executable/convert/from_cells2stats_to_h5mu/from_cells2stats_to_h5mu
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_cells2stats_to_h5mu"
-LABEL org.opencontainers.image.created="2025-08-25T07:30:20Z"
+LABEL org.opencontainers.image.created="2025-08-25T08:17:05Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192"
 LABEL org.opencontainers.image.version="v0.1.0"

 VIASHDOCKER
--- a/target/executable/convert/from_cosmx_to_h5mu/.config.vsh.yaml
+++ b/target/executable/convert/from_cosmx_to_h5mu/.config.vsh.yaml
@@ -225,7 +225,7 @@ build_info:
  output: "target/executable/convert/from_cosmx_to_h5mu"
  executable: "target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu
+++ b/target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu
@@ -459,9 +459,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_cosmx_to_h5mu"
-LABEL org.opencontainers.image.created="2025-08-25T07:30:21Z"
+LABEL org.opencontainers.image.created="2025-08-25T08:17:06Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192"
 LABEL org.opencontainers.image.version="v0.1.0"

 VIASHDOCKER
--- a/target/executable/convert/from_cosmx_to_spatialexperiment/.config.vsh.yaml
+++ b/target/executable/convert/from_cosmx_to_spatialexperiment/.config.vsh.yaml
@@ -232,7 +232,7 @@ build_info:
  output: "target/executable/convert/from_cosmx_to_spatialexperiment"
  executable: "target/executable/convert/from_cosmx_to_spatialexperiment/from_cosmx_to_spatialexperiment"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/convert/from_cosmx_to_spatialexperiment/from_cosmx_to_spatialexperiment
+++ b/target/executable/convert/from_cosmx_to_spatialexperiment/from_cosmx_to_spatialexperiment
@@ -457,9 +457,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("BiocManager", quietly

 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_cosmx_to_spatialexperiment"
-LABEL org.opencontainers.image.created="2025-08-25T07:30:20Z"
+LABEL org.opencontainers.image.created="2025-08-25T08:17:05Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192"
 LABEL org.opencontainers.image.version="v0.1.0"

 VIASHDOCKER
--- a/target/executable/convert/from_h5mu_to_spatialexperiment/.config.vsh.yaml
+++ b/target/executable/convert/from_h5mu_to_spatialexperiment/.config.vsh.yaml
@@ -224,7 +224,7 @@ build_info:
  output: "target/executable/convert/from_h5mu_to_spatialexperiment"
  executable: "target/executable/convert/from_h5mu_to_spatialexperiment/from_h5mu_to_spatialexperiment"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/convert/from_h5mu_to_spatialexperiment/from_h5mu_to_spatialexperiment
+++ b/target/executable/convert/from_h5mu_to_spatialexperiment/from_h5mu_to_spatialexperiment
@@ -458,9 +458,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR

 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_h5mu_to_spatialexperiment"
-LABEL org.opencontainers.image.created="2025-08-25T07:30:20Z"
+LABEL org.opencontainers.image.created="2025-08-25T08:17:06Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192"
 LABEL org.opencontainers.image.version="v0.1.0"

 VIASHDOCKER
--- a/target/executable/convert/from_spatialdata_to_h5mu/.config.vsh.yaml
+++ b/target/executable/convert/from_spatialdata_to_h5mu/.config.vsh.yaml
@@ -220,7 +220,7 @@ build_info:
  output: "target/executable/convert/from_spatialdata_to_h5mu"
  executable: "target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu
+++ b/target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu
@@ -459,9 +459,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_spatialdata_to_h5mu"
-LABEL org.opencontainers.image.created="2025-08-25T07:30:20Z"
+LABEL org.opencontainers.image.created="2025-08-25T08:17:05Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192"
 LABEL org.opencontainers.image.version="v0.1.0"

 VIASHDOCKER
--- a/target/executable/convert/from_xenium_to_h5mu/.config.vsh.yaml
+++ b/target/executable/convert/from_xenium_to_h5mu/.config.vsh.yaml
@@ -233,7 +233,7 @@ build_info:
  output: "target/executable/convert/from_xenium_to_h5mu"
  executable: "target/executable/convert/from_xenium_to_h5mu/from_xenium_to_h5mu"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/convert/from_xenium_to_h5mu/from_xenium_to_h5mu
+++ b/target/executable/convert/from_xenium_to_h5mu/from_xenium_to_h5mu
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_xenium_to_h5mu"
-LABEL org.opencontainers.image.created="2025-08-25T07:30:20Z"
+LABEL org.opencontainers.image.created="2025-08-25T08:17:05Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192"
 LABEL org.opencontainers.image.version="v0.1.0"

 VIASHDOCKER
--- a/target/executable/convert/from_xenium_to_spatialdata/.config.vsh.yaml
+++ b/target/executable/convert/from_xenium_to_spatialdata/.config.vsh.yaml
@@ -314,7 +314,7 @@ build_info:
  output: "target/executable/convert/from_xenium_to_spatialdata"
  executable: "target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata
+++ b/target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_xenium_to_spatialdata"
-LABEL org.opencontainers.image.created="2025-08-25T07:30:21Z"
+LABEL org.opencontainers.image.created="2025-08-25T08:17:06Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192"
 LABEL org.opencontainers.image.version="v0.1.0"

 VIASHDOCKER
--- a/target/executable/convert/from_xenium_to_spatialexperiment/.config.vsh.yaml
+++ b/target/executable/convert/from_xenium_to_spatialexperiment/.config.vsh.yaml
@@ -222,7 +222,7 @@ build_info:
  output: "target/executable/convert/from_xenium_to_spatialexperiment"
  executable: "target/executable/convert/from_xenium_to_spatialexperiment/from_xenium_to_spatialexperiment"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/convert/from_xenium_to_spatialexperiment/from_xenium_to_spatialexperiment
+++ b/target/executable/convert/from_xenium_to_spatialexperiment/from_xenium_to_spatialexperiment
@@ -457,9 +457,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("BiocManager", quietly

 LABEL org.opencontainers.image.authors="Dorien Roosen"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_xenium_to_spatialexperiment"
-LABEL org.opencontainers.image.created="2025-08-25T07:30:20Z"
+LABEL org.opencontainers.image.created="2025-08-25T08:17:05Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192"
 LABEL org.opencontainers.image.version="v0.1.0"

 VIASHDOCKER
--- a/target/executable/filter/subset_cosmx/.config.vsh.yaml
+++ b/target/executable/filter/subset_cosmx/.config.vsh.yaml
@@ -227,7 +227,7 @@ build_info:
  output: "target/executable/filter/subset_cosmx"
  executable: "target/executable/filter/subset_cosmx/subset_cosmx"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/filter/subset_cosmx/subset_cosmx
+++ b/target/executable/filter/subset_cosmx/subset_cosmx
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component filter subset_cosmx"
-LABEL org.opencontainers.image.created="2025-08-25T07:30:20Z"
+LABEL org.opencontainers.image.created="2025-08-25T08:17:05Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192"
 LABEL org.opencontainers.image.version="v0.1.0"

 VIASHDOCKER
--- a/target/executable/mapping/spaceranger_count/.config.vsh.yaml
+++ b/target/executable/mapping/spaceranger_count/.config.vsh.yaml
@@ -426,7 +426,7 @@ build_info:
  output: "target/executable/mapping/spaceranger_count"
  executable: "target/executable/mapping/spaceranger_count/spaceranger_count"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/executable/mapping/spaceranger_count/spaceranger_count
+++ b/target/executable/mapping/spaceranger_count/spaceranger_count
@@ -453,9 +453,9 @@ apt upgrade -y && apt install -y procps && rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.authors="Jakub Majercik"
 LABEL org.opencontainers.image.description="Companion container for running component mapping spaceranger_count"
-LABEL org.opencontainers.image.created="2025-08-25T07:30:21Z"
+LABEL org.opencontainers.image.created="2025-08-25T08:17:06Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+LABEL org.opencontainers.image.revision="963107088819638e9e15d4f413c0a763dc81a192"
 LABEL org.opencontainers.image.version="v0.1.0"

 VIASHDOCKER
--- a/target/nextflow/convert/from_cells2stats_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/convert/from_cells2stats_to_h5mu/.config.vsh.yaml
@@ -290,7 +290,7 @@ build_info:
  output: "target/nextflow/convert/from_cells2stats_to_h5mu"
  executable: "target/nextflow/convert/from_cells2stats_to_h5mu/main.nf"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/convert/from_cells2stats_to_h5mu/main.nf
+++ b/target/nextflow/convert/from_cells2stats_to_h5mu/main.nf
@@ -3382,7 +3382,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/convert/from_cells2stats_to_h5mu",
    "viash_version" : "0.9.4",
-    "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325",
+    "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/convert/from_cosmx_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/convert/from_cosmx_to_h5mu/.config.vsh.yaml
@@ -225,7 +225,7 @@ build_info:
  output: "target/nextflow/convert/from_cosmx_to_h5mu"
  executable: "target/nextflow/convert/from_cosmx_to_h5mu/main.nf"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/convert/from_cosmx_to_h5mu/main.nf
+++ b/target/nextflow/convert/from_cosmx_to_h5mu/main.nf
@@ -3331,7 +3331,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/convert/from_cosmx_to_h5mu",
    "viash_version" : "0.9.4",
-    "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325",
+    "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/convert/from_cosmx_to_spatialexperiment/.config.vsh.yaml
+++ b/target/nextflow/convert/from_cosmx_to_spatialexperiment/.config.vsh.yaml
@@ -232,7 +232,7 @@ build_info:
  output: "target/nextflow/convert/from_cosmx_to_spatialexperiment"
  executable: "target/nextflow/convert/from_cosmx_to_spatialexperiment/main.nf"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/convert/from_cosmx_to_spatialexperiment/main.nf
+++ b/target/nextflow/convert/from_cosmx_to_spatialexperiment/main.nf
@@ -3322,7 +3322,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/convert/from_cosmx_to_spatialexperiment",
    "viash_version" : "0.9.4",
-    "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325",
+    "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/convert/from_h5mu_to_spatialexperiment/.config.vsh.yaml
+++ b/target/nextflow/convert/from_h5mu_to_spatialexperiment/.config.vsh.yaml
@@ -224,7 +224,7 @@ build_info:
  output: "target/nextflow/convert/from_h5mu_to_spatialexperiment"
  executable: "target/nextflow/convert/from_h5mu_to_spatialexperiment/main.nf"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/convert/from_h5mu_to_spatialexperiment/main.nf
+++ b/target/nextflow/convert/from_h5mu_to_spatialexperiment/main.nf
@@ -3332,7 +3332,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/convert/from_h5mu_to_spatialexperiment",
    "viash_version" : "0.9.4",
-    "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325",
+    "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/convert/from_spatialdata_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/convert/from_spatialdata_to_h5mu/.config.vsh.yaml
@@ -220,7 +220,7 @@ build_info:
  output: "target/nextflow/convert/from_spatialdata_to_h5mu"
  executable: "target/nextflow/convert/from_spatialdata_to_h5mu/main.nf"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/convert/from_spatialdata_to_h5mu/main.nf
+++ b/target/nextflow/convert/from_spatialdata_to_h5mu/main.nf
@@ -3330,7 +3330,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/convert/from_spatialdata_to_h5mu",
    "viash_version" : "0.9.4",
-    "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325",
+    "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/convert/from_xenium_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/convert/from_xenium_to_h5mu/.config.vsh.yaml
@@ -233,7 +233,7 @@ build_info:
  output: "target/nextflow/convert/from_xenium_to_h5mu"
  executable: "target/nextflow/convert/from_xenium_to_h5mu/main.nf"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/convert/from_xenium_to_h5mu/main.nf
+++ b/target/nextflow/convert/from_xenium_to_h5mu/main.nf
@@ -3331,7 +3331,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/convert/from_xenium_to_h5mu",
    "viash_version" : "0.9.4",
-    "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325",
+    "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/convert/from_xenium_to_spatialdata/.config.vsh.yaml
+++ b/target/nextflow/convert/from_xenium_to_spatialdata/.config.vsh.yaml
@@ -314,7 +314,7 @@ build_info:
  output: "target/nextflow/convert/from_xenium_to_spatialdata"
  executable: "target/nextflow/convert/from_xenium_to_spatialdata/main.nf"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/convert/from_xenium_to_spatialdata/main.nf
+++ b/target/nextflow/convert/from_xenium_to_spatialdata/main.nf
@@ -3425,7 +3425,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/convert/from_xenium_to_spatialdata",
    "viash_version" : "0.9.4",
-    "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325",
+    "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/convert/from_xenium_to_spatialexperiment/.config.vsh.yaml
+++ b/target/nextflow/convert/from_xenium_to_spatialexperiment/.config.vsh.yaml
@@ -222,7 +222,7 @@ build_info:
  output: "target/nextflow/convert/from_xenium_to_spatialexperiment"
  executable: "target/nextflow/convert/from_xenium_to_spatialexperiment/main.nf"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/convert/from_xenium_to_spatialexperiment/main.nf
+++ b/target/nextflow/convert/from_xenium_to_spatialexperiment/main.nf
@@ -3311,7 +3311,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/convert/from_xenium_to_spatialexperiment",
    "viash_version" : "0.9.4",
-    "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325",
+    "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/filter/subset_cosmx/.config.vsh.yaml
+++ b/target/nextflow/filter/subset_cosmx/.config.vsh.yaml
@@ -227,7 +227,7 @@ build_info:
  output: "target/nextflow/filter/subset_cosmx"
  executable: "target/nextflow/filter/subset_cosmx/main.nf"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/filter/subset_cosmx/main.nf
+++ b/target/nextflow/filter/subset_cosmx/main.nf
@@ -3333,7 +3333,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/filter/subset_cosmx",
    "viash_version" : "0.9.4",
-    "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325",
+    "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/mapping/spaceranger_count/.config.vsh.yaml
+++ b/target/nextflow/mapping/spaceranger_count/.config.vsh.yaml
@@ -426,7 +426,7 @@ build_info:
  output: "target/nextflow/mapping/spaceranger_count"
  executable: "target/nextflow/mapping/spaceranger_count/main.nf"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
  name: "openpipeline_spatial"
--- a/target/nextflow/mapping/spaceranger_count/main.nf
+++ b/target/nextflow/mapping/spaceranger_count/main.nf
@@ -3548,7 +3548,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/mapping/spaceranger_count",
    "viash_version" : "0.9.4",
-    "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325",
+    "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/workflows/multiomics/spatial_process_samples/.config.vsh.yaml
+++ b/target/nextflow/workflows/multiomics/spatial_process_samples/.config.vsh.yaml
@@ -644,7 +644,7 @@ build_info:
  output: "target/nextflow/workflows/multiomics/spatial_process_samples"
  executable: "target/nextflow/workflows/multiomics/spatial_process_samples/main.nf"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
  dependencies:
  - "target/dependencies/github/openpipelines-bio/openpipeline/disable-scrublet_build/nextflow/workflows/multiomics/process_samples"
--- a/target/nextflow/workflows/multiomics/spatial_process_samples/main.nf
+++ b/target/nextflow/workflows/multiomics/spatial_process_samples/main.nf
@@ -3813,7 +3813,7 @@ meta = [
    "engine" : "native",
    "output" : "/workdir/root/repo/target/nextflow/workflows/multiomics/spatial_process_samples",
    "viash_version" : "0.9.4",
-    "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325",
+    "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
--- a/target/nextflow/workflows/qc/spatial_qc/.config.vsh.yaml
+++ b/target/nextflow/workflows/qc/spatial_qc/.config.vsh.yaml
@@ -387,7 +387,7 @@ build_info:
  output: "target/nextflow/workflows/qc/spatial_qc"
  executable: "target/nextflow/workflows/qc/spatial_qc/main.nf"
  viash_version: "0.9.4"
-  git_commit: "7a9cc3c862e39ab584bea178b10aeb4b19d46325"
+  git_commit: "963107088819638e9e15d4f413c0a763dc81a192"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
  dependencies:
  - "target/dependencies/vsh/vsh/openpipeline/v3.0.0/nextflow/workflows/qc/qc"
--- a/target/nextflow/workflows/qc/spatial_qc/main.nf
+++ b/target/nextflow/workflows/qc/spatial_qc/main.nf
@@ -3505,7 +3505,7 @@ meta = [
    "engine" : "native",
    "output" : "/workdir/root/repo/target/nextflow/workflows/qc/spatial_qc",
    "viash_version" : "0.9.4",
-    "git_commit" : "7a9cc3c862e39ab584bea178b10aeb4b19d46325",
+    "git_commit" : "963107088819638e9e15d4f413c0a763dc81a192",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {