Build branch main with version main (1e1ffb3)

Build pipeline: vsh-ci-dev-jsbwk

Source commit: 1e1ffb315f

Source message: Merge pull request #17 from viash-hub/add_biobox_modules

- Migrate a number of components to biobox
- Fix tests
- Reduce size of test resources
- Prepare for Viash Hub
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2024-09-13 07:41:13 +00:00
commit 1ebb61f1e8
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name: "preprocess_transcripts_fasta"
info:
migration_info:
git_repo: https://github.com/nf-core/rnaseq.git
paths: [modules/local/preprocess_transcripts_fasta_gencode.nf]
last_sha: 0a1bdcfbb498987643b74e9fccab85ccd9f2a17d
description: |
Process transcripts FASTA if GTF file is GENOCODE format
argument_groups:
- name: "Input"
arguments:
- name: "--transcript_fasta"
type: file
required: true
description: Path of transcripts FASTA file
- name: "Output"
arguments:
- name: "--output"
type: file
direction: output
required: true
description: Path of processed output FASTA file.
resources:
- type: bash_script
path: script.sh
test_resources:
- type: bash_script
path: test.sh
- path: /testData/minimal_test/reference/transcriptome.fasta
engines:
- type: docker
image: ubuntu:22.04
runners:
- type: executable
- type: nextflow