Build branch main with version main (1e1ffb3)
Build pipeline: vsh-ci-dev-jsbwk
Source commit: 1e1ffb315f
Source message: Merge pull request #17 from viash-hub/add_biobox_modules
- Migrate a number of components to biobox
- Fix tests
- Reduce size of test resources
- Prepare for Viash Hub
This commit is contained in:
40
src/preprocess_transcripts_fasta/config.vsh.yaml
Normal file
40
src/preprocess_transcripts_fasta/config.vsh.yaml
Normal file
@@ -0,0 +1,40 @@
|
||||
name: "preprocess_transcripts_fasta"
|
||||
info:
|
||||
migration_info:
|
||||
git_repo: https://github.com/nf-core/rnaseq.git
|
||||
paths: [modules/local/preprocess_transcripts_fasta_gencode.nf]
|
||||
last_sha: 0a1bdcfbb498987643b74e9fccab85ccd9f2a17d
|
||||
description: |
|
||||
Process transcripts FASTA if GTF file is GENOCODE format
|
||||
|
||||
argument_groups:
|
||||
- name: "Input"
|
||||
arguments:
|
||||
- name: "--transcript_fasta"
|
||||
type: file
|
||||
required: true
|
||||
description: Path of transcripts FASTA file
|
||||
|
||||
- name: "Output"
|
||||
arguments:
|
||||
- name: "--output"
|
||||
type: file
|
||||
direction: output
|
||||
required: true
|
||||
description: Path of processed output FASTA file.
|
||||
|
||||
resources:
|
||||
- type: bash_script
|
||||
path: script.sh
|
||||
|
||||
test_resources:
|
||||
- type: bash_script
|
||||
path: test.sh
|
||||
- path: /testData/minimal_test/reference/transcriptome.fasta
|
||||
|
||||
engines:
|
||||
- type: docker
|
||||
image: ubuntu:22.04
|
||||
runners:
|
||||
- type: executable
|
||||
- type: nextflow
|
||||
Reference in New Issue
Block a user