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Build branch main with version main (a4f2c7d)

Browse Source 
Build pipeline: viash-hub.rnaseq.main-f78nc

Source commit: a4f2c7d5a1

Source message: multiple minor fixes
This commit is contained in:
CI
2024-11-21 08:37:00 +00:00
parent 2d86d22f22
commit 20fef7a87e
230 changed files with 736 additions and 661 deletions
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3
src/workflows/prepare_genome/config.vsh.yaml
View File

@@ -39,6 +39,9 @@ argument_groups:
- name: "--star_index"
type: file
description: Path to directory or tar.gz archive for pre-built STAR index.
- name: --star_sjdb_gtf_feature_exon
type: string
description: Feature type in GTF file to be used as exons for building transcripts
- name: "--rsem_index"
type: file
description: Path to directory or tar.gz archive for pre-built RSEM index.

5
src/workflows/prepare_genome/main.nf
View File

@@ -5,7 +5,7 @@ workflow run_wf {
main:
output_ch = input_ch
// Uncompress fasta
| gunzip.run (
fromState: [ "input": "fasta" ],
@@ -188,7 +188,8 @@ workflow run_wf {
runIf: {id, state -> !state.star_index && !state.skip_alignment},
fromState: [
"genome_fasta_files": "fasta",
"sjdb_gtf_file": "gtf"
"sjdb_gtf_file": "gtf",
"sjdb_gtf_feature_exon": "star_sjdb_gtf_feature_exon"
],
toState: [ "star_index": "index" ],
key: "generate_star_index",

10
src/workflows/quality_control/config.vsh.yaml
View File

@@ -68,15 +68,13 @@ argument_groups:
description: Expression counts on transcript level
- name: "--skip_qc"
type: boolean
default: false
type: boolean_true
- name: "--skip_biotype_qc"
type: boolean
type: boolean_true
- name: "--skip_align"
type: boolean
default: false
type: boolean_true
- name: "--skip_pseudo_align"
type: boolean
type: boolean_true
- name: "--skip_dupradar"
type: boolean_true
- name: "--skip_qualimap"

14
src/workflows/quality_control/main.nf
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@@ -392,12 +392,12 @@ workflow run_wf {
passed_strand_check: passed_strand_check,
skip_align: skip_align,
skip_pseudo_align: skip_pseudo_align,
quant_results: quant_results,
rsem_counts_gene: rsem_counts_gene,
rsem_counts_transcripts: rsem_counts_transcripts,
pseudo_quant_out_dir: pseudo_quant_out_dir,
pseudo_salmon_quant_results: pseudo_salmon_quant_results,
pseudo_kallisto_quant_results: pseudo_kallisto_quant_results,
quant_results: quant_results.findAll { it != null },
rsem_counts_gene: rsem_counts_gene.findAll { it != null },
rsem_counts_transcripts: rsem_counts_transcripts.findAll { it != null },
pseudo_quant_out_dir: pseudo_quant_out_dir.findAll { it != null },
pseudo_salmon_quant_results: pseudo_salmon_quant_results.findAll { it != null },
pseudo_kallisto_quant_results: pseudo_kallisto_quant_results.findAll { it != null },
gtf: gtf,
gtf_extra_attributes: gtf_extra_attributes,
gtf_group_features: gtf_group_features,
@@ -536,7 +536,7 @@ workflow run_wf {
],
key: "deseq2_qc_pseuso_align_quant"
)
| niceView()
// Get list of samples that failed trimming, mapping, and strand check for MultiQC report
| map { id, state ->
def fail_trimming_header = ["Sample", "Reads after trimming"]

3
src/workflows/rnaseq/config.vsh.yaml
View File

@@ -96,6 +96,9 @@ argument_groups:
type: string
description: By default, the pipeline assigns reads based on the 'exon' attribute within the GTF file.
default: exon
- name: --star_sjdb_gtf_feature_exon
type: string
description: Feature type in GTF file to be used as exons for building transcripts
- name: Read trimming options
arguments:

16
src/workflows/rnaseq/main.nf
View File

@@ -39,8 +39,10 @@ workflow run_wf {
// hisat2_index: list.collect { id, state -> state.hisat2_index }.unique()[0],
bbsplit_index: list.collect { id, state -> state.bbsplit_index }.unique()[0],
skip_bbsplit: list.collect { id, state -> state.skip_bbsplit }.unique()[0],
skip_alignment: list.collect { id, state -> state.skip_alignment }.unique()[0],
gencode: list.collect { id, state -> state.gencode }.unique()[0],
biotype: list.collect { id, state -> state.biotype }.unique()[0],
star_sjdb_gtf_feature_exon: list.collect { id, state -> state.star_sjdb_gtf_feature_exon }.unique()[0],
filter_gtf: list.collect { id, state -> state.filter_gtf }.unique()[0],
pseudo_aligner_kmer_size: list.collect { id, state -> state.pseudo_aligner_kmer_size }.unique()[0] ]
]
@@ -70,7 +72,8 @@ workflow run_wf {
"filter_gtf": "filter_gtf",
"aligner": "aligner",
"pseudo_aligner": "pseudo_aligner",
"skip_alignment": "skip_alignment"
"skip_alignment": "skip_alignment",
"star_sjdb_gtf_feature_exon": "star_sjdb_gtf_feature_exon"
],
toState: [
"fasta": "uncompressed_fasta",
@@ -578,12 +581,21 @@ def isBelowMaxContigSize(fai_file) {
return true
}
// Find a file in a directory
import java.nio.file.*
def findFile(Path dir, String fileName) {
Files.walk(dir)
.filter { Files.isRegularFile(it) && it.fileName.toString() == fileName }
.findFirst()
.orElse(null)
}
import groovy.json.JsonSlurper
//
// Function that parses Salmon quant 'meta_info.json' output file to get inferred strandedness
//
def getSalmonInferredStrandedness(salmon_quant_output) {
def json_file = new File(salmon_quant_output).listFiles().find { it.name == "meta_info.json" || it.isDirectory() && it.listFiles().find { it.name == "meta_info.json" } }
def json_file = findFile(salmon_quant_output, 'meta_info.json')
def lib_type = new JsonSlurper().parseText(json_file.text).get('library_types')[0]
def strandedness = 'reverse'
if (lib_type) {

6
target/dependencies/vsh/vsh/biobox/main/nextflow/fastp/.config.vsh.yaml
View File

@@ -1083,9 +1083,9 @@ build_info:
output: "target/nextflow/fastp"
executable: "target/nextflow/fastp/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/fastp/main.nf
View File

@@ -4023,9 +4023,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/fastp",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

6
target/dependencies/vsh/vsh/biobox/main/nextflow/featurecounts/.config.vsh.yaml
View File

@@ -645,9 +645,9 @@ build_info:
output: "target/nextflow/featurecounts"
executable: "target/nextflow/featurecounts/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/featurecounts/main.nf
View File

@@ -3549,9 +3549,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/featurecounts",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

6
target/dependencies/vsh/vsh/biobox/main/nextflow/gffread/.config.vsh.yaml
View File

@@ -685,9 +685,9 @@ build_info:
output: "target/nextflow/gffread"
executable: "target/nextflow/gffread/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/gffread/main.nf
View File

@@ -3606,9 +3606,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/gffread",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

6
target/dependencies/vsh/vsh/biobox/main/nextflow/multiqc/.config.vsh.yaml
View File

@@ -456,9 +456,9 @@ build_info:
output: "target/nextflow/multiqc"
executable: "target/nextflow/multiqc/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/multiqc/main.nf
View File

@@ -3366,9 +3366,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/multiqc",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

6
target/dependencies/vsh/vsh/biobox/main/nextflow/rsem/rsem_prepare_reference/.config.vsh.yaml
View File

@@ -416,9 +416,9 @@ build_info:
output: "target/nextflow/rsem/rsem_prepare_reference"
executable: "target/nextflow/rsem/rsem_prepare_reference/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/rsem/rsem_prepare_reference/main.nf
View File

@@ -3245,9 +3245,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/rsem/rsem_prepare_reference",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

6
target/dependencies/vsh/vsh/biobox/main/nextflow/salmon/salmon_index/.config.vsh.yaml
View File

@@ -277,9 +277,9 @@ build_info:
output: "target/nextflow/salmon/salmon_index"
executable: "target/nextflow/salmon/salmon_index/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/salmon/salmon_index/main.nf
View File

@@ -3129,9 +3129,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/salmon/salmon_index",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

6
target/dependencies/vsh/vsh/biobox/main/nextflow/salmon/salmon_quant/.config.vsh.yaml
View File

@@ -1173,9 +1173,9 @@ build_info:
output: "target/nextflow/salmon/salmon_quant"
executable: "target/nextflow/salmon/salmon_quant/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/salmon/salmon_quant/main.nf
View File

@@ -3964,9 +3964,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/salmon/salmon_quant",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

6
target/dependencies/vsh/vsh/biobox/main/nextflow/samtools/samtools_flagstat/.config.vsh.yaml
View File

@@ -173,9 +173,9 @@ build_info:
output: "target/nextflow/samtools/samtools_flagstat"
executable: "target/nextflow/samtools/samtools_flagstat/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/samtools/samtools_flagstat/main.nf
View File

@@ -3028,9 +3028,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/samtools/samtools_flagstat",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

6
target/dependencies/vsh/vsh/biobox/main/nextflow/samtools/samtools_idxstats/.config.vsh.yaml
View File

@@ -183,9 +183,9 @@ build_info:
output: "target/nextflow/samtools/samtools_idxstats"
executable: "target/nextflow/samtools/samtools_idxstats/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/samtools/samtools_idxstats/main.nf
View File

@@ -3040,9 +3040,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/samtools/samtools_idxstats",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

6
target/dependencies/vsh/vsh/biobox/main/nextflow/samtools/samtools_index/.config.vsh.yaml
View File

@@ -189,9 +189,9 @@ build_info:
output: "target/nextflow/samtools/samtools_index"
executable: "target/nextflow/samtools/samtools_index/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/samtools/samtools_index/main.nf
View File

@@ -3053,9 +3053,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/samtools/samtools_index",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

6
target/dependencies/vsh/vsh/biobox/main/nextflow/samtools/samtools_sort/.config.vsh.yaml
View File

@@ -332,9 +332,9 @@ build_info:
output: "target/nextflow/samtools/samtools_sort"
executable: "target/nextflow/samtools/samtools_sort/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/samtools/samtools_sort/main.nf
View File

@@ -3225,9 +3225,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/samtools/samtools_sort",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

6
target/dependencies/vsh/vsh/biobox/main/nextflow/samtools/samtools_stats/.config.vsh.yaml
View File

@@ -401,9 +401,9 @@ build_info:
output: "target/nextflow/samtools/samtools_stats"
executable: "target/nextflow/samtools/samtools_stats/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/samtools/samtools_stats/main.nf
View File

@@ -3295,9 +3295,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/samtools/samtools_stats",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

6
target/dependencies/vsh/vsh/biobox/main/nextflow/star/star_align_reads/.config.vsh.yaml
View File

@@ -2663,9 +2663,9 @@ build_info:
output: "target/nextflow/star/star_align_reads"
executable: "target/nextflow/star/star_align_reads/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/star/star_align_reads/main.nf
View File

@@ -5943,9 +5943,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/star/star_align_reads",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

6
target/dependencies/vsh/vsh/biobox/main/nextflow/star/star_genome_generate/.config.vsh.yaml
View File

@@ -333,9 +333,9 @@ build_info:
output: "target/nextflow/star/star_genome_generate"
executable: "target/nextflow/star/star_genome_generate/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/star/star_genome_generate/main.nf
View File

@@ -3195,9 +3195,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/star/star_genome_generate",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

6
target/dependencies/vsh/vsh/biobox/main/nextflow/umi_tools/umi_tools_extract/.config.vsh.yaml
View File

@@ -434,9 +434,9 @@ build_info:
output: "target/nextflow/umi_tools/umi_tools_extract"
executable: "target/nextflow/umi_tools/umi_tools_extract/main.nf"
viash_version: "0.9.0"
git_commit: "1d17ce01e25569c8e898b8160af1480ad22fc986"
git_remote: "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox"
git_tag: "v0.2.0-24-g1d17ce0"
git_commit: "065297be5fb2d88020fc50e042bb3f49c9254ae9"
git_remote: "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox"
git_tag: "v0.2.0-25-g065297b"
package_config:
name: "biobox"
version: "main"

6
target/dependencies/vsh/vsh/biobox/main/nextflow/umi_tools/umi_tools_extract/main.nf
View File

@@ -3299,9 +3299,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/umi_tools/umi_tools_extract",
"viash_version" : "0.9.0",
"git_commit" : "1d17ce01e25569c8e898b8160af1480ad22fc986",
"git_remote" : "https://x-access-token:ghs_6YTGQkPF5IMZyp8fS3YMcIBjhXPmep1DKcNC@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-24-g1d17ce0"
"git_commit" : "065297be5fb2d88020fc50e042bb3f49c9254ae9",
"git_remote" : "https://x-access-token:ghs_bGw8YykA469ibXe1g5GsidZ6N0n23m22jhvl@github.com/viash-hub/biobox",
"git_tag" : "v0.2.0-25-g065297b"
},
"package_config" : {
"name" : "biobox",

4
target/executable/bbmap_bbsplit/.config.vsh.yaml
View File

@@ -238,8 +238,8 @@ build_info:
output: "target/executable/bbmap_bbsplit"
executable: "target/executable/bbmap_bbsplit/bbmap_bbsplit"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/bbmap_bbsplit/bbmap_bbsplit
View File

@@ -506,9 +506,9 @@ tar xzf BBMap_39.01.tar.gz && \
cp -r bbmap/* /usr/local/bin
LABEL org.opencontainers.image.description="Companion container for running component bbmap_bbsplit"
LABEL org.opencontainers.image.created="2024-11-13T12:42:23Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:07Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/bedtools_genomecov/.config.vsh.yaml
View File

@@ -178,8 +178,8 @@ build_info:
output: "target/executable/bedtools_genomecov"
executable: "target/executable/bedtools_genomecov/bedtools_genomecov"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/bedtools_genomecov/bedtools_genomecov
View File

@@ -481,9 +481,9 @@ mv bedtools.static /usr/local/bin/bedtools && \
chmod a+x /usr/local/bin/bedtools
LABEL org.opencontainers.image.description="Companion container for running component bedtools_genomecov"
LABEL org.opencontainers.image.created="2024-11-13T12:42:22Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:05Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/cat_additional_fasta/.config.vsh.yaml
View File

@@ -182,8 +182,8 @@ build_info:
output: "target/executable/cat_additional_fasta"
executable: "target/executable/cat_additional_fasta/cat_additional_fasta"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/cat_additional_fasta/cat_additional_fasta
View File

@@ -480,9 +480,9 @@ function ViashDockerfile {
FROM python:latest
ENTRYPOINT []
LABEL org.opencontainers.image.description="Companion container for running component cat_additional_fasta"
LABEL org.opencontainers.image.created="2024-11-13T12:42:21Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:04Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/cat_fastq/.config.vsh.yaml
View File

@@ -169,8 +169,8 @@ build_info:
output: "target/executable/cat_fastq"
executable: "target/executable/cat_fastq/cat_fastq"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/cat_fastq/cat_fastq
View File

@@ -472,9 +472,9 @@ function ViashDockerfile {
FROM ubuntu:22.04
ENTRYPOINT []
LABEL org.opencontainers.image.description="Companion container for running component cat_fastq"
LABEL org.opencontainers.image.created="2024-11-13T12:42:20Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:03Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/deseq2_qc/.config.vsh.yaml
View File

@@ -237,8 +237,8 @@ build_info:
output: "target/executable/deseq2_qc"
executable: "target/executable/deseq2_qc/deseq2_qc"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/deseq2_qc/deseq2_qc
View File

@@ -506,9 +506,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
Rscript -e 'remotes::install_cran(c("optparse", "ggplot2", "RColorBrewer", "pheatmap", "stringr", "matrixStats"), repos = "https://cran.rstudio.com")'
LABEL org.opencontainers.image.description="Companion container for running component deseq2_qc"
LABEL org.opencontainers.image.created="2024-11-13T12:42:22Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:05Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/dupradar/.config.vsh.yaml
View File

@@ -266,8 +266,8 @@ build_info:
output: "target/executable/dupradar"
executable: "target/executable/dupradar/dupradar"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/dupradar/dupradar
View File

@@ -520,9 +520,9 @@ RUN Rscript -e 'if (!requireNamespace("BiocManager", quietly = TRUE)) install.pa
Rscript -e 'if (!requireNamespace("dupRadar", quietly = TRUE)) BiocManager::install("dupRadar")'
LABEL org.opencontainers.image.description="Companion container for running component dupradar"
LABEL org.opencontainers.image.created="2024-11-13T12:42:22Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:05Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/fastqc/.config.vsh.yaml
View File

@@ -198,8 +198,8 @@ build_info:
output: "target/executable/fastqc"
executable: "target/executable/fastqc/fastqc"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/fastqc/fastqc
View File

@@ -490,9 +490,9 @@ RUN apt-get update && \
rm -rf /var/lib/apt/lists/*
LABEL org.opencontainers.image.description="Companion container for running component fastqc"
LABEL org.opencontainers.image.created="2024-11-13T12:42:25Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:08Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/fq_subsample/.config.vsh.yaml
View File

@@ -177,8 +177,8 @@ build_info:
output: "target/executable/fq_subsample"
executable: "target/executable/fq_subsample/fq_subsample"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/fq_subsample/fq_subsample
View File

@@ -485,9 +485,9 @@ cargo install --locked --path . && \
mv /usr/local/fq/target/release/fq /usr/local/bin/
LABEL org.opencontainers.image.description="Companion container for running component fq_subsample"
LABEL org.opencontainers.image.created="2024-11-13T12:42:23Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:06Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/getchromsizes/.config.vsh.yaml
View File

@@ -167,8 +167,8 @@ build_info:
output: "target/executable/getchromsizes"
executable: "target/executable/getchromsizes/getchromsizes"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/getchromsizes/getchromsizes
View File

@@ -480,9 +480,9 @@ make && \
make install
LABEL org.opencontainers.image.description="Companion container for running component getchromsizes"
LABEL org.opencontainers.image.created="2024-11-13T12:42:21Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:04Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/gtf2bed/.config.vsh.yaml
View File

@@ -145,8 +145,8 @@ build_info:
output: "target/executable/gtf2bed"
executable: "target/executable/gtf2bed/gtf2bed"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/gtf2bed/gtf2bed
View File

@@ -466,9 +466,9 @@ RUN apt-get update && \
rm -rf /var/lib/apt/lists/*
LABEL org.opencontainers.image.description="Companion container for running component gtf2bed"
LABEL org.opencontainers.image.created="2024-11-13T12:42:23Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:06Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/gtf_filter/.config.vsh.yaml
View File

@@ -155,8 +155,8 @@ build_info:
output: "target/executable/gtf_filter"
executable: "target/executable/gtf_filter/gtf_filter"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/gtf_filter/gtf_filter
View File

@@ -470,9 +470,9 @@ function ViashDockerfile {
FROM python:latest
ENTRYPOINT []
LABEL org.opencontainers.image.description="Companion container for running component gtf_filter"
LABEL org.opencontainers.image.created="2024-11-13T12:42:21Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:04Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/gunzip/.config.vsh.yaml
View File

@@ -144,8 +144,8 @@ build_info:
output: "target/executable/gunzip"
executable: "target/executable/gunzip/gunzip"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/gunzip/gunzip
View File

@@ -466,9 +466,9 @@ RUN apt-get update && \
rm -rf /var/lib/apt/lists/*
LABEL org.opencontainers.image.description="Companion container for running component gunzip"
LABEL org.opencontainers.image.created="2024-11-13T12:42:16Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:05:59Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/kallisto/kallisto_index/.config.vsh.yaml
View File

@@ -155,8 +155,8 @@ build_info:
output: "target/executable/kallisto/kallisto_index"
executable: "target/executable/kallisto/kallisto_index/kallisto_index"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/kallisto/kallisto_index/kallisto_index
View File

@@ -471,9 +471,9 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \
mv kallisto/kallisto /usr/local/bin/
LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_index"
LABEL org.opencontainers.image.created="2024-11-13T12:42:17Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:00Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/kallisto/kallisto_quant/.config.vsh.yaml
View File

@@ -253,8 +253,8 @@ build_info:
output: "target/executable/kallisto/kallisto_quant"
executable: "target/executable/kallisto/kallisto_quant/kallisto_quant"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/kallisto/kallisto_quant/kallisto_quant
View File

@@ -515,9 +515,9 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \
mv kallisto/kallisto /usr/local/bin/
LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_quant"
LABEL org.opencontainers.image.created="2024-11-13T12:42:17Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:00Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/multiqc_custom_biotype/.config.vsh.yaml
View File

@@ -161,8 +161,8 @@ build_info:
output: "target/executable/multiqc_custom_biotype"
executable: "target/executable/multiqc_custom_biotype/multiqc_custom_biotype"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/multiqc_custom_biotype/multiqc_custom_biotype
View File

@@ -476,9 +476,9 @@ function ViashDockerfile {
FROM python:latest
ENTRYPOINT []
LABEL org.opencontainers.image.description="Companion container for running component multiqc_custom_biotype"
LABEL org.opencontainers.image.created="2024-11-13T12:42:20Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:03Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/picard_markduplicates/.config.vsh.yaml
View File

@@ -207,8 +207,8 @@ build_info:
output: "target/executable/picard_markduplicates"
executable: "target/executable/picard_markduplicates/picard_markduplicates"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/picard_markduplicates/picard_markduplicates
View File

@@ -494,9 +494,9 @@ wget --no-check-certificate https://github.com/broadinstitute/picard/releases/do
mv picard.jar /usr/local/bin
LABEL org.opencontainers.image.description="Companion container for running component picard_markduplicates"
LABEL org.opencontainers.image.created="2024-11-13T12:42:18Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:02Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/prepare_multiqc_input/.config.vsh.yaml
View File

@@ -409,8 +409,8 @@ build_info:
output: "target/executable/prepare_multiqc_input"
executable: "target/executable/prepare_multiqc_input/prepare_multiqc_input"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/prepare_multiqc_input/prepare_multiqc_input
View File

@@ -557,9 +557,9 @@ function ViashDockerfile {
FROM ubuntu:22.04
ENTRYPOINT []
LABEL org.opencontainers.image.description="Companion container for running component prepare_multiqc_input"
LABEL org.opencontainers.image.created="2024-11-13T12:42:14Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:05:57Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/preprocess_transcripts_fasta/.config.vsh.yaml
View File

@@ -138,8 +138,8 @@ build_info:
output: "target/executable/preprocess_transcripts_fasta"
executable: "target/executable/preprocess_transcripts_fasta/preprocess_transcripts_fasta"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/preprocess_transcripts_fasta/preprocess_transcripts_fasta
View File

@@ -462,9 +462,9 @@ function ViashDockerfile {
FROM ubuntu:22.04
ENTRYPOINT []
LABEL org.opencontainers.image.description="Companion container for running component preprocess_transcripts_fasta"
LABEL org.opencontainers.image.created="2024-11-13T12:42:19Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:02Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/preseq_lcextrap/.config.vsh.yaml
View File

@@ -191,8 +191,8 @@ build_info:
output: "target/executable/preseq_lcextrap"
executable: "target/executable/preseq_lcextrap/preseq_lcextrap"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/preseq_lcextrap/preseq_lcextrap
View File

@@ -495,9 +495,9 @@ mkdir build && cd build && \
make && make install && make HAVE_HTSLIB=1 all
LABEL org.opencontainers.image.description="Companion container for running component preseq_lcextrap"
LABEL org.opencontainers.image.created="2024-11-13T12:42:18Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:01Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/qualimap/.config.vsh.yaml
View File

@@ -271,8 +271,8 @@ build_info:
output: "target/executable/qualimap"
executable: "target/executable/qualimap/qualimap"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/qualimap/qualimap
View File

@@ -537,9 +537,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
Rscript -e 'remotes::install_cran(c("optparse"), repos = "https://cran.rstudio.com")'
LABEL org.opencontainers.image.description="Companion container for running component qualimap"
LABEL org.opencontainers.image.created="2024-11-13T12:42:16Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:05:59Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml
View File

@@ -299,8 +299,8 @@ build_info:
output: "target/executable/rsem/rsem_calculate_expression"
executable: "target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression
View File

@@ -542,9 +542,9 @@ echo 'export PATH=$PATH:/usr/local/bin' >> ~/.bashrc && \
/bin/bash -c "source /etc/profile && source ~/.bashrc && echo $PATH && which STAR"
LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_calculate_expression"
LABEL org.opencontainers.image.created="2024-11-13T12:42:15Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:05:59Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rsem/rsem_merge_counts/.config.vsh.yaml
View File

@@ -182,8 +182,8 @@ build_info:
output: "target/executable/rsem/rsem_merge_counts"
executable: "target/executable/rsem/rsem_merge_counts/rsem_merge_counts"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rsem/rsem_merge_counts/rsem_merge_counts
View File

@@ -483,9 +483,9 @@ function ViashDockerfile {
FROM ubuntu:22.04
ENTRYPOINT []
LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_merge_counts"
LABEL org.opencontainers.image.created="2024-11-13T12:42:15Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:05:58Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml
View File

@@ -163,8 +163,8 @@ build_info:
output: "target/executable/rseqc/rseqc_bamstat"
executable: "target/executable/rseqc/rseqc_bamstat/rseqc_bamstat"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_bamstat/rseqc_bamstat
View File

@@ -477,9 +477,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_bamstat"
LABEL org.opencontainers.image.created="2024-11-13T12:42:20Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:03Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml
View File

@@ -186,8 +186,8 @@ build_info:
output: "target/executable/rseqc/rseqc_inferexperiment"
executable: "target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment
View File

@@ -487,9 +487,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inferexperiment"
LABEL org.opencontainers.image.created="2024-11-13T12:42:22Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:05Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_innerdistance/.config.vsh.yaml
View File

@@ -272,8 +272,8 @@ build_info:
output: "target/executable/rseqc/rseqc_innerdistance"
executable: "target/executable/rseqc/rseqc_innerdistance/rseqc_innerdistance"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_innerdistance/rseqc_innerdistance
View File

@@ -529,9 +529,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_innerdistance"
LABEL org.opencontainers.image.created="2024-11-13T12:42:20Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:03Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_junctionannotation/.config.vsh.yaml
View File

@@ -260,8 +260,8 @@ build_info:
output: "target/executable/rseqc/rseqc_junctionannotation"
executable: "target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation
View File

@@ -519,9 +519,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_junctionannotation"
LABEL org.opencontainers.image.created="2024-11-13T12:42:20Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:03Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_junctionsaturation/.config.vsh.yaml
View File

@@ -249,8 +249,8 @@ build_info:
output: "target/executable/rseqc/rseqc_junctionsaturation"
executable: "target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation
View File

@@ -522,9 +522,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_junctionsaturation"
LABEL org.opencontainers.image.created="2024-11-13T12:42:21Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:04Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_readdistribution/.config.vsh.yaml
View File

@@ -162,8 +162,8 @@ build_info:
output: "target/executable/rseqc/rseqc_readdistribution"
executable: "target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution
View File

@@ -474,9 +474,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_readdistribution"
LABEL org.opencontainers.image.created="2024-11-13T12:42:21Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:04Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_readduplication/.config.vsh.yaml
View File

@@ -211,8 +211,8 @@ build_info:
output: "target/executable/rseqc/rseqc_readduplication"
executable: "target/executable/rseqc/rseqc_readduplication/rseqc_readduplication"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_readduplication/rseqc_readduplication
View File

@@ -499,9 +499,9 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "RSeQC"
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_readduplication"
LABEL org.opencontainers.image.created="2024-11-13T12:42:19Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:02Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/rseqc/rseqc_tin/.config.vsh.yaml
View File

@@ -214,8 +214,8 @@ build_info:
output: "target/executable/rseqc/rseqc_tin"
executable: "target/executable/rseqc/rseqc_tin/rseqc_tin"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/rseqc/rseqc_tin/rseqc_tin
View File

@@ -501,9 +501,9 @@ RUN apt-get update && \
RUN pip3 install RSeQC
LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_tin"
LABEL org.opencontainers.image.created="2024-11-13T12:42:21Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:04Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/sortmerna/.config.vsh.yaml
View File

@@ -192,8 +192,8 @@ build_info:
output: "target/executable/sortmerna"
executable: "target/executable/sortmerna/sortmerna"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/sortmerna/sortmerna
View File

@@ -486,9 +486,9 @@ function ViashDockerfile {
FROM quay.io/biocontainers/sortmerna:4.3.6--h9ee0642_0
ENTRYPOINT []
LABEL org.opencontainers.image.description="Companion container for running component sortmerna"
LABEL org.opencontainers.image.created="2024-11-13T12:42:24Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:07Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/stringtie/.config.vsh.yaml
View File

@@ -216,8 +216,8 @@ build_info:
output: "target/executable/stringtie"
executable: "target/executable/stringtie/stringtie"
viash_version: "0.9.0"
git_commit: "a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
git_remote: "https://x-access-token:ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
git_commit: "a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
git_remote: "https://x-access-token:ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
package_config:
name: "rnaseq"
version: "main"

6
target/executable/stringtie/stringtie
View File

@@ -496,9 +496,9 @@ tar -xzf stringtie-2.2.1.Linux_x86_64.tar.gz && \
cp stringtie-2.2.1.Linux_x86_64/stringtie /usr/local/bin/
LABEL org.opencontainers.image.description="Companion container for running component stringtie"
LABEL org.opencontainers.image.created="2024-11-13T12:42:25Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_U4pAQwhSWAqkeDDEK1YyMxMtkXglzF3wJkYc@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a04f9bab8aec1c4f5e8ade4d5b68c2d4c92a7814"
LABEL org.opencontainers.image.created="2024-11-21T08:06:08Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_hUComHHyuHIIVQYt2HdqulL85sCkXr3K9lOo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="a4f2c7d5a1d0c27cc538c9b06ec4dec5c62f8d74"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

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