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Build branch v0.1 with version v0.1.0 (ed1f695)

Browse Source 
Build pipeline: viash-hub.rnaseq.v0.1-bs99g

Source commit: ed1f6955d0

Source message: Bump version to v0.1.0
This commit is contained in:
CI
2024-10-04 19:26:14 +00:00
parent 50e78b4b9a
commit 69e0b1ebaf
246 changed files with 1350 additions and 1349 deletions
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12
target/executable/kallisto/kallisto_index/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "kallisto_index"
namespace: "kallisto"
version: "v0.1"
version: "v0.1.0"
argument_groups:
- name: "Input"
arguments:
@@ -135,7 +135,7 @@ engines:
id: "docker"
image: "ubuntu:22.04"
target_registry: "images.viash-hub.com"
target_tag: "v0.1"
target_tag: "v0.1.0"
namespace_separator: "/"
setup:
- type: "docker"
@@ -155,10 +155,10 @@ build_info:
output: "target/executable/kallisto/kallisto_index"
executable: "target/executable/kallisto/kallisto_index/kallisto_index"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa"
git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
package_config:
version: "v0.1"
version: "v0.1.0"
info:
test_resources:
- path: "gs://viash-hub-test-data/rnaseq/v1"
@@ -180,5 +180,5 @@ package_config:
\ := '$id'\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.1'"
- ".engines[.type == 'docker'].target_tag := 'v0.1.0'"
organization: "vsh"

16
target/executable/kallisto/kallisto_index/kallisto_index
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# kallisto_index v0.1
# kallisto_index v0.1.0
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "kallisto_index v0.1"
echo "kallisto_index v0.1.0"
echo ""
echo "Create Kallisto index."
echo ""
@@ -471,10 +471,10 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \
mv kallisto/kallisto /usr/local/bin/
LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_index"
LABEL org.opencontainers.image.created="2024-10-04T10:28:30Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b"
LABEL org.opencontainers.image.version="v0.1"
LABEL org.opencontainers.image.created="2024-10-04T11:21:55Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa"
LABEL org.opencontainers.image.version="v0.1.0"
VIASHDOCKER
fi
@@ -610,7 +610,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "kallisto_index v0.1"
echo "kallisto_index v0.1.0"
exit
;;
--transcriptome_fasta)
@@ -734,7 +734,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/kallisto/kallisto_index:v0.1'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/kallisto/kallisto_index:v0.1.0'
fi
# print dockerfile

12
target/executable/kallisto/kallisto_quant/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "kallisto_quant"
namespace: "kallisto"
version: "v0.1"
version: "v0.1.0"
argument_groups:
- name: "Input"
arguments:
@@ -233,7 +233,7 @@ engines:
id: "docker"
image: "ubuntu:22.04"
target_registry: "images.viash-hub.com"
target_tag: "v0.1"
target_tag: "v0.1.0"
namespace_separator: "/"
setup:
- type: "docker"
@@ -253,10 +253,10 @@ build_info:
output: "target/executable/kallisto/kallisto_quant"
executable: "target/executable/kallisto/kallisto_quant/kallisto_quant"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa"
git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
package_config:
version: "v0.1"
version: "v0.1.0"
info:
test_resources:
- path: "gs://viash-hub-test-data/rnaseq/v1"
@@ -278,5 +278,5 @@ package_config:
\ := '$id'\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.1'"
- ".engines[.type == 'docker'].target_tag := 'v0.1.0'"
organization: "vsh"

16
target/executable/kallisto/kallisto_quant/kallisto_quant
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# kallisto_quant v0.1
# kallisto_quant v0.1.0
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "kallisto_quant v0.1"
echo "kallisto_quant v0.1.0"
echo ""
echo "Computes equivalence classes for reads and quantifies abundances."
echo ""
@@ -515,10 +515,10 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \
mv kallisto/kallisto /usr/local/bin/
LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_quant"
LABEL org.opencontainers.image.created="2024-10-04T10:28:30Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="fd0354dae813d953b107e8fa856f3cd4e7939f2b"
LABEL org.opencontainers.image.version="v0.1"
LABEL org.opencontainers.image.created="2024-10-04T11:21:55Z"
LABEL org.opencontainers.image.source="https://x-access-token/ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
LABEL org.opencontainers.image.revision="ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa"
LABEL org.opencontainers.image.version="v0.1.0"
VIASHDOCKER
fi
@@ -654,7 +654,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "kallisto_quant v0.1"
echo "kallisto_quant v0.1.0"
exit
;;
--input)
@@ -883,7 +883,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/kallisto/kallisto_quant:v0.1'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/kallisto/kallisto_quant:v0.1.0'
fi
# print dockerfile