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Build branch v0.1 with version v0.1.0 (ed1f695)

Browse Source 
Build pipeline: viash-hub.rnaseq.v0.1-bs99g

Source commit: ed1f6955d0

Source message: Bump version to v0.1.0
This commit is contained in:
CI
2024-10-04 19:26:14 +00:00
parent 50e78b4b9a
commit 69e0b1ebaf
246 changed files with 1350 additions and 1349 deletions
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12
target/nextflow/rseqc/rseqc_bamstat/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "rseqc_bamstat"
namespace: "rseqc"
version: "v0.1"
version: "v0.1.0"
argument_groups:
- name: "Input"
arguments:
@@ -140,7 +140,7 @@ engines:
id: "docker"
image: "ubuntu:22.04"
target_registry: "images.viash-hub.com"
target_tag: "v0.1"
target_tag: "v0.1.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -163,10 +163,10 @@ build_info:
output: "target/nextflow/rseqc/rseqc_bamstat"
executable: "target/nextflow/rseqc/rseqc_bamstat/main.nf"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa"
git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
package_config:
version: "v0.1"
version: "v0.1.0"
info:
test_resources:
- path: "gs://viash-hub-test-data/rnaseq/v1"
@@ -188,5 +188,5 @@ package_config:
\ := '$id'\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.1'"
- ".engines[.type == 'docker'].target_tag := 'v0.1.0'"
organization: "vsh"

16
target/nextflow/rseqc/rseqc_bamstat/main.nf
View File

@@ -1,4 +1,4 @@
// rseqc_bamstat v0.1
// rseqc_bamstat v0.1.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2806,7 +2806,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "rseqc_bamstat",
"namespace" : "rseqc",
"version" : "v0.1",
"version" : "v0.1.0",
"argument_groups" : [
{
"name" : "Input",
@@ -2985,7 +2985,7 @@ meta = [
"id" : "docker",
"image" : "ubuntu:22.04",
"target_registry" : "images.viash-hub.com",
"target_tag" : "v0.1",
"target_tag" : "v0.1.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3016,11 +3016,11 @@ meta = [
"engine" : "docker|native",
"output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_bamstat",
"viash_version" : "0.9.0",
"git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b",
"git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
"git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa",
"git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
},
"package_config" : {
"version" : "v0.1",
"version" : "v0.1.0",
"info" : {
"test_resources" : [
{
@@ -3050,7 +3050,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := 'v0.1'"
".engines[.type == 'docker'].target_tag := 'v0.1.0'"
],
"organization" : "vsh"
}
@@ -3460,7 +3460,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/rseqc/rseqc_bamstat",
"tag" : "v0.1"
"tag" : "v0.1.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/rseqc/rseqc_bamstat/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'rseqc/rseqc_bamstat'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = 'v0.1'
version = 'v0.1.0'
description = 'Generate statistics from a bam file.\n'
}

12
target/nextflow/rseqc/rseqc_inferexperiment/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "rseqc_inferexperiment"
namespace: "rseqc"
version: "v0.1"
version: "v0.1.0"
argument_groups:
- name: "Input"
arguments:
@@ -163,7 +163,7 @@ engines:
id: "docker"
image: "ubuntu:22.04"
target_registry: "images.viash-hub.com"
target_tag: "v0.1"
target_tag: "v0.1.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -186,10 +186,10 @@ build_info:
output: "target/nextflow/rseqc/rseqc_inferexperiment"
executable: "target/nextflow/rseqc/rseqc_inferexperiment/main.nf"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa"
git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
package_config:
version: "v0.1"
version: "v0.1.0"
info:
test_resources:
- path: "gs://viash-hub-test-data/rnaseq/v1"
@@ -211,5 +211,5 @@ package_config:
\ := '$id'\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.1'"
- ".engines[.type == 'docker'].target_tag := 'v0.1.0'"
organization: "vsh"

16
target/nextflow/rseqc/rseqc_inferexperiment/main.nf
View File

@@ -1,4 +1,4 @@
// rseqc_inferexperiment v0.1
// rseqc_inferexperiment v0.1.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2806,7 +2806,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "rseqc_inferexperiment",
"namespace" : "rseqc",
"version" : "v0.1",
"version" : "v0.1.0",
"argument_groups" : [
{
"name" : "Input",
@@ -3013,7 +3013,7 @@ meta = [
"id" : "docker",
"image" : "ubuntu:22.04",
"target_registry" : "images.viash-hub.com",
"target_tag" : "v0.1",
"target_tag" : "v0.1.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3044,11 +3044,11 @@ meta = [
"engine" : "docker|native",
"output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_inferexperiment",
"viash_version" : "0.9.0",
"git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b",
"git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
"git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa",
"git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
},
"package_config" : {
"version" : "v0.1",
"version" : "v0.1.0",
"info" : {
"test_resources" : [
{
@@ -3078,7 +3078,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := 'v0.1'"
".engines[.type == 'docker'].target_tag := 'v0.1.0'"
],
"organization" : "vsh"
}
@@ -3492,7 +3492,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/rseqc/rseqc_inferexperiment",
"tag" : "v0.1"
"tag" : "v0.1.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/rseqc/rseqc_inferexperiment/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'rseqc/rseqc_inferexperiment'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = 'v0.1'
version = 'v0.1.0'
description = 'Infer strandedness from sequencing reads\n'
}

12
target/nextflow/rseqc/rseqc_innerdistance/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "rseqc_innerdistance"
namespace: "rseqc"
version: "v0.1"
version: "v0.1.0"
argument_groups:
- name: "Input"
arguments:
@@ -248,7 +248,7 @@ engines:
id: "docker"
image: "ubuntu:22.04"
target_registry: "images.viash-hub.com"
target_tag: "v0.1"
target_tag: "v0.1.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -272,10 +272,10 @@ build_info:
output: "target/nextflow/rseqc/rseqc_innerdistance"
executable: "target/nextflow/rseqc/rseqc_innerdistance/main.nf"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa"
git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
package_config:
version: "v0.1"
version: "v0.1.0"
info:
test_resources:
- path: "gs://viash-hub-test-data/rnaseq/v1"
@@ -297,5 +297,5 @@ package_config:
\ := '$id'\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.1'"
- ".engines[.type == 'docker'].target_tag := 'v0.1.0'"
organization: "vsh"

16
target/nextflow/rseqc/rseqc_innerdistance/main.nf
View File

@@ -1,4 +1,4 @@
// rseqc_innerdistance v0.1
// rseqc_innerdistance v0.1.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2806,7 +2806,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "rseqc_innerdistance",
"namespace" : "rseqc",
"version" : "v0.1",
"version" : "v0.1.0",
"argument_groups" : [
{
"name" : "Input",
@@ -3105,7 +3105,7 @@ meta = [
"id" : "docker",
"image" : "ubuntu:22.04",
"target_registry" : "images.viash-hub.com",
"target_tag" : "v0.1",
"target_tag" : "v0.1.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3137,11 +3137,11 @@ meta = [
"engine" : "docker|native",
"output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_innerdistance",
"viash_version" : "0.9.0",
"git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b",
"git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
"git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa",
"git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
},
"package_config" : {
"version" : "v0.1",
"version" : "v0.1.0",
"info" : {
"test_resources" : [
{
@@ -3171,7 +3171,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := 'v0.1'"
".engines[.type == 'docker'].target_tag := 'v0.1.0'"
],
"organization" : "vsh"
}
@@ -3605,7 +3605,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/rseqc/rseqc_innerdistance",
"tag" : "v0.1"
"tag" : "v0.1.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/rseqc/rseqc_innerdistance/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'rseqc/rseqc_innerdistance'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = 'v0.1'
version = 'v0.1.0'
description = 'Calculate inner distance between read pairs. \n'
}

12
target/nextflow/rseqc/rseqc_junctionannotation/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "rseqc_junctionannotation"
namespace: "rseqc"
version: "v0.1"
version: "v0.1.0"
argument_groups:
- name: "Input"
arguments:
@@ -236,7 +236,7 @@ engines:
id: "docker"
image: "ubuntu:22.04"
target_registry: "images.viash-hub.com"
target_tag: "v0.1"
target_tag: "v0.1.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -260,10 +260,10 @@ build_info:
output: "target/nextflow/rseqc/rseqc_junctionannotation"
executable: "target/nextflow/rseqc/rseqc_junctionannotation/main.nf"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa"
git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
package_config:
version: "v0.1"
version: "v0.1.0"
info:
test_resources:
- path: "gs://viash-hub-test-data/rnaseq/v1"
@@ -285,5 +285,5 @@ package_config:
\ := '$id'\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.1'"
- ".engines[.type == 'docker'].target_tag := 'v0.1.0'"
organization: "vsh"

16
target/nextflow/rseqc/rseqc_junctionannotation/main.nf
View File

@@ -1,4 +1,4 @@
// rseqc_junctionannotation v0.1
// rseqc_junctionannotation v0.1.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2806,7 +2806,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "rseqc_junctionannotation",
"namespace" : "rseqc",
"version" : "v0.1",
"version" : "v0.1.0",
"argument_groups" : [
{
"name" : "Input",
@@ -3096,7 +3096,7 @@ meta = [
"id" : "docker",
"image" : "ubuntu:22.04",
"target_registry" : "images.viash-hub.com",
"target_tag" : "v0.1",
"target_tag" : "v0.1.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3128,11 +3128,11 @@ meta = [
"engine" : "docker|native",
"output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_junctionannotation",
"viash_version" : "0.9.0",
"git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b",
"git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
"git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa",
"git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
},
"package_config" : {
"version" : "v0.1",
"version" : "v0.1.0",
"info" : {
"test_resources" : [
{
@@ -3162,7 +3162,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := 'v0.1'"
".engines[.type == 'docker'].target_tag := 'v0.1.0'"
],
"organization" : "vsh"
}
@@ -3592,7 +3592,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/rseqc/rseqc_junctionannotation",
"tag" : "v0.1"
"tag" : "v0.1.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/rseqc/rseqc_junctionannotation/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'rseqc/rseqc_junctionannotation'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = 'v0.1'
version = 'v0.1.0'
description = 'Compare detected splice junctions to reference gene model.\n'
}

12
target/nextflow/rseqc/rseqc_junctionsaturation/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "rseqc_junctionsaturation"
namespace: "rseqc"
version: "v0.1"
version: "v0.1.0"
argument_groups:
- name: "Input"
arguments:
@@ -225,7 +225,7 @@ engines:
id: "docker"
image: "ubuntu:22.04"
target_registry: "images.viash-hub.com"
target_tag: "v0.1"
target_tag: "v0.1.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -249,10 +249,10 @@ build_info:
output: "target/nextflow/rseqc/rseqc_junctionsaturation"
executable: "target/nextflow/rseqc/rseqc_junctionsaturation/main.nf"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa"
git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
package_config:
version: "v0.1"
version: "v0.1.0"
info:
test_resources:
- path: "gs://viash-hub-test-data/rnaseq/v1"
@@ -274,5 +274,5 @@ package_config:
\ := '$id'\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.1'"
- ".engines[.type == 'docker'].target_tag := 'v0.1.0'"
organization: "vsh"

16
target/nextflow/rseqc/rseqc_junctionsaturation/main.nf
View File

@@ -1,4 +1,4 @@
// rseqc_junctionsaturation v0.1
// rseqc_junctionsaturation v0.1.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2806,7 +2806,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "rseqc_junctionsaturation",
"namespace" : "rseqc",
"version" : "v0.1",
"version" : "v0.1.0",
"argument_groups" : [
{
"name" : "Input",
@@ -3081,7 +3081,7 @@ meta = [
"id" : "docker",
"image" : "ubuntu:22.04",
"target_registry" : "images.viash-hub.com",
"target_tag" : "v0.1",
"target_tag" : "v0.1.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3113,11 +3113,11 @@ meta = [
"engine" : "docker|native",
"output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_junctionsaturation",
"viash_version" : "0.9.0",
"git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b",
"git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
"git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa",
"git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
},
"package_config" : {
"version" : "v0.1",
"version" : "v0.1.0",
"info" : {
"test_resources" : [
{
@@ -3147,7 +3147,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := 'v0.1'"
".engines[.type == 'docker'].target_tag := 'v0.1.0'"
],
"organization" : "vsh"
}
@@ -3575,7 +3575,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/rseqc/rseqc_junctionsaturation",
"tag" : "v0.1"
"tag" : "v0.1.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/rseqc/rseqc_junctionsaturation/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'rseqc/rseqc_junctionsaturation'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = 'v0.1'
version = 'v0.1.0'
description = 'Compare detected splice junctions to reference gene model.\n'
}

12
target/nextflow/rseqc/rseqc_readdistribution/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "rseqc_readdistribution"
namespace: "rseqc"
version: "v0.1"
version: "v0.1.0"
argument_groups:
- name: "Input"
arguments:
@@ -139,7 +139,7 @@ engines:
id: "docker"
image: "ubuntu:22.04"
target_registry: "images.viash-hub.com"
target_tag: "v0.1"
target_tag: "v0.1.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -162,10 +162,10 @@ build_info:
output: "target/nextflow/rseqc/rseqc_readdistribution"
executable: "target/nextflow/rseqc/rseqc_readdistribution/main.nf"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa"
git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
package_config:
version: "v0.1"
version: "v0.1.0"
info:
test_resources:
- path: "gs://viash-hub-test-data/rnaseq/v1"
@@ -187,5 +187,5 @@ package_config:
\ := '$id'\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.1'"
- ".engines[.type == 'docker'].target_tag := 'v0.1.0'"
organization: "vsh"

16
target/nextflow/rseqc/rseqc_readdistribution/main.nf
View File

@@ -1,4 +1,4 @@
// rseqc_readdistribution v0.1
// rseqc_readdistribution v0.1.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2806,7 +2806,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "rseqc_readdistribution",
"namespace" : "rseqc",
"version" : "v0.1",
"version" : "v0.1.0",
"argument_groups" : [
{
"name" : "Input",
@@ -2986,7 +2986,7 @@ meta = [
"id" : "docker",
"image" : "ubuntu:22.04",
"target_registry" : "images.viash-hub.com",
"target_tag" : "v0.1",
"target_tag" : "v0.1.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3017,11 +3017,11 @@ meta = [
"engine" : "docker|native",
"output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_readdistribution",
"viash_version" : "0.9.0",
"git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b",
"git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
"git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa",
"git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
},
"package_config" : {
"version" : "v0.1",
"version" : "v0.1.0",
"info" : {
"test_resources" : [
{
@@ -3051,7 +3051,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := 'v0.1'"
".engines[.type == 'docker'].target_tag := 'v0.1.0'"
],
"organization" : "vsh"
}
@@ -3461,7 +3461,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/rseqc/rseqc_readdistribution",
"tag" : "v0.1"
"tag" : "v0.1.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/rseqc/rseqc_readdistribution/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'rseqc/rseqc_readdistribution'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = 'v0.1'
version = 'v0.1.0'
description = 'Calculate how mapped reads are distributed over genomic features.\n'
}

12
target/nextflow/rseqc/rseqc_readduplication/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "rseqc_readduplication"
namespace: "rseqc"
version: "v0.1"
version: "v0.1.0"
argument_groups:
- name: "Input"
arguments:
@@ -187,7 +187,7 @@ engines:
id: "docker"
image: "ubuntu:22.04"
target_registry: "images.viash-hub.com"
target_tag: "v0.1"
target_tag: "v0.1.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -211,10 +211,10 @@ build_info:
output: "target/nextflow/rseqc/rseqc_readduplication"
executable: "target/nextflow/rseqc/rseqc_readduplication/main.nf"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa"
git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
package_config:
version: "v0.1"
version: "v0.1.0"
info:
test_resources:
- path: "gs://viash-hub-test-data/rnaseq/v1"
@@ -236,5 +236,5 @@ package_config:
\ := '$id'\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.1'"
- ".engines[.type == 'docker'].target_tag := 'v0.1.0'"
organization: "vsh"

16
target/nextflow/rseqc/rseqc_readduplication/main.nf
View File

@@ -1,4 +1,4 @@
// rseqc_readduplication v0.1
// rseqc_readduplication v0.1.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2806,7 +2806,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "rseqc_readduplication",
"namespace" : "rseqc",
"version" : "v0.1",
"version" : "v0.1.0",
"argument_groups" : [
{
"name" : "Input",
@@ -3039,7 +3039,7 @@ meta = [
"id" : "docker",
"image" : "ubuntu:22.04",
"target_registry" : "images.viash-hub.com",
"target_tag" : "v0.1",
"target_tag" : "v0.1.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3071,11 +3071,11 @@ meta = [
"engine" : "docker|native",
"output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_readduplication",
"viash_version" : "0.9.0",
"git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b",
"git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
"git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa",
"git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
},
"package_config" : {
"version" : "v0.1",
"version" : "v0.1.0",
"info" : {
"test_resources" : [
{
@@ -3105,7 +3105,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := 'v0.1'"
".engines[.type == 'docker'].target_tag := 'v0.1.0'"
],
"organization" : "vsh"
}
@@ -3527,7 +3527,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/rseqc/rseqc_readduplication",
"tag" : "v0.1"
"tag" : "v0.1.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/rseqc/rseqc_readduplication/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'rseqc/rseqc_readduplication'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = 'v0.1'
version = 'v0.1.0'
description = 'Calculate read duplication rate.\n'
}

12
target/nextflow/rseqc/rseqc_tin/.config.vsh.yaml
View File

@@ -1,6 +1,6 @@
name: "rseqc_tin"
namespace: "rseqc"
version: "v0.1"
version: "v0.1.0"
argument_groups:
- name: "Input"
arguments:
@@ -193,7 +193,7 @@ engines:
id: "docker"
image: "ubuntu:22.04"
target_registry: "images.viash-hub.com"
target_tag: "v0.1"
target_tag: "v0.1.0"
namespace_separator: "/"
setup:
- type: "apt"
@@ -214,10 +214,10 @@ build_info:
output: "target/nextflow/rseqc/rseqc_tin"
executable: "target/nextflow/rseqc/rseqc_tin/main.nf"
viash_version: "0.9.0"
git_commit: "fd0354dae813d953b107e8fa856f3cd4e7939f2b"
git_remote: "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
git_commit: "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa"
git_remote: "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
package_config:
version: "v0.1"
version: "v0.1.0"
info:
test_resources:
- path: "gs://viash-hub-test-data/rnaseq/v1"
@@ -239,5 +239,5 @@ package_config:
\ := '$id'\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.1'"
- ".engines[.type == 'docker'].target_tag := 'v0.1.0'"
organization: "vsh"

16
target/nextflow/rseqc/rseqc_tin/main.nf
View File

@@ -1,4 +1,4 @@
// rseqc_tin v0.1
// rseqc_tin v0.1.0
//
// This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
// work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -2806,7 +2806,7 @@ meta = [
"config": processConfig(readJsonBlob('''{
"name" : "rseqc_tin",
"namespace" : "rseqc",
"version" : "v0.1",
"version" : "v0.1.0",
"argument_groups" : [
{
"name" : "Input",
@@ -3047,7 +3047,7 @@ meta = [
"id" : "docker",
"image" : "ubuntu:22.04",
"target_registry" : "images.viash-hub.com",
"target_tag" : "v0.1",
"target_tag" : "v0.1.0",
"namespace_separator" : "/",
"setup" : [
{
@@ -3076,11 +3076,11 @@ meta = [
"engine" : "docker|native",
"output" : "/workdir/root/repo/target/nextflow/rseqc/rseqc_tin",
"viash_version" : "0.9.0",
"git_commit" : "fd0354dae813d953b107e8fa856f3cd4e7939f2b",
"git_remote" : "https://x-access-token:ghs_uEvoQGzqSMA9DB5p54qDCLqLtMHR6W1wWY8K@github.com/viash-hub/rnaseq"
"git_commit" : "ed1f6955d07b7dc1f4a606fc35a1176f7d70a6fa",
"git_remote" : "https://x-access-token:ghs_tXtyBoqiv8A2hCsnUFe4lEgzrzh9764dBmxo@github.com/viash-hub/rnaseq"
},
"package_config" : {
"version" : "v0.1",
"version" : "v0.1.0",
"info" : {
"test_resources" : [
{
@@ -3110,7 +3110,7 @@ meta = [
".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].directives.tag := '$id'\n",
".engines += { type: \\"native\\" }",
".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
".engines[.type == 'docker'].target_tag := 'v0.1'"
".engines[.type == 'docker'].target_tag := 'v0.1.0'"
],
"organization" : "vsh"
}
@@ -3546,7 +3546,7 @@ meta["defaults"] = [
"container" : {
"registry" : "images.viash-hub.com",
"image" : "vsh/rseqc/rseqc_tin",
"tag" : "v0.1"
"tag" : "v0.1.0"
},
"tag" : "$id"
}'''),

2
target/nextflow/rseqc/rseqc_tin/nextflow.config
View File

@@ -2,7 +2,7 @@ manifest {
name = 'rseqc/rseqc_tin'
mainScript = 'main.nf'
nextflowVersion = '!>=20.12.1-edge'
version = 'v0.1'
version = 'v0.1.0'
description = 'Calculte TIN (transcript integrity number) from RNA-seq reads\n'
}