Build branch multiple_fixes with version multiple_fixes (7a7ce42)

Build pipeline: viash-hub.rnaseq.multiple-fixes-bql8w Source commit: 7a7ce42c4d Source message: remove niceView
2024-09-30 12:00:35 +00:00
parent 8c0aff2702
commit dee1fb1e7a
190 changed files with 229 additions and 232 deletions
--- a/src/workflows/post_processing/main.nf
+++ b/src/workflows/post_processing/main.nf
@@ -138,7 +138,6 @@ workflow run_wf {
          def mod_state = state.findAll { key, value -> value instanceof java.nio.file.Path && value.exists() }
          [ id, mod_state ]
        }
-        | niceView()

        | setState (
            "processed_genome_bam": "processed_genome_bam", 
--- a/target/executable/bbmap_bbsplit/.config.vsh.yaml
+++ b/target/executable/bbmap_bbsplit/.config.vsh.yaml
@@ -238,7 +238,7 @@ build_info:
  output: "target/executable/bbmap_bbsplit"
  executable: "target/executable/bbmap_bbsplit/bbmap_bbsplit"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/bbmap_bbsplit/bbmap_bbsplit
+++ b/target/executable/bbmap_bbsplit/bbmap_bbsplit
@@ -506,9 +506,9 @@ tar xzf BBMap_39.01.tar.gz && \
 cp -r bbmap/* /usr/local/bin

 LABEL org.opencontainers.image.description="Companion container for running component bbmap_bbsplit"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:29Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:51:56Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/bedtools_genomecov/.config.vsh.yaml
+++ b/target/executable/bedtools_genomecov/.config.vsh.yaml
@@ -178,7 +178,7 @@ build_info:
  output: "target/executable/bedtools_genomecov"
  executable: "target/executable/bedtools_genomecov/bedtools_genomecov"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/bedtools_genomecov/bedtools_genomecov
+++ b/target/executable/bedtools_genomecov/bedtools_genomecov
@@ -481,9 +481,9 @@ mv bedtools.static /usr/local/bin/bedtools && \
 chmod a+x /usr/local/bin/bedtools

 LABEL org.opencontainers.image.description="Companion container for running component bedtools_genomecov"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:29Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:51:57Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/cat_additional_fasta/.config.vsh.yaml
+++ b/target/executable/cat_additional_fasta/.config.vsh.yaml
@@ -182,7 +182,7 @@ build_info:
  output: "target/executable/cat_additional_fasta"
  executable: "target/executable/cat_additional_fasta/cat_additional_fasta"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/cat_additional_fasta/cat_additional_fasta
+++ b/target/executable/cat_additional_fasta/cat_additional_fasta
@@ -480,9 +480,9 @@ function ViashDockerfile {
 FROM python:latest
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component cat_additional_fasta"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:37Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:05Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/cat_fastq/.config.vsh.yaml
+++ b/target/executable/cat_fastq/.config.vsh.yaml
@@ -169,7 +169,7 @@ build_info:
  output: "target/executable/cat_fastq"
  executable: "target/executable/cat_fastq/cat_fastq"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/cat_fastq/cat_fastq
+++ b/target/executable/cat_fastq/cat_fastq
@@ -472,9 +472,9 @@ function ViashDockerfile {
 FROM ubuntu:22.04
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component cat_fastq"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:37Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:05Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/deseq2_qc/.config.vsh.yaml
+++ b/target/executable/deseq2_qc/.config.vsh.yaml
@@ -237,7 +237,7 @@ build_info:
  output: "target/executable/deseq2_qc"
  executable: "target/executable/deseq2_qc/deseq2_qc"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/deseq2_qc/deseq2_qc
+++ b/target/executable/deseq2_qc/deseq2_qc
@@ -502,9 +502,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
  Rscript -e 'remotes::install_url(c("https://cran.r-project.org/src/contrib/Archive/matrixStats/matrixStats_1.1.0.tar.gz"), repos = "https://cran.rstudio.com")'

 LABEL org.opencontainers.image.description="Companion container for running component deseq2_qc"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:47Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:15Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/dupradar/.config.vsh.yaml
+++ b/target/executable/dupradar/.config.vsh.yaml
@@ -266,7 +266,7 @@ build_info:
  output: "target/executable/dupradar"
  executable: "target/executable/dupradar/dupradar"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/dupradar/dupradar
+++ b/target/executable/dupradar/dupradar
@@ -520,9 +520,9 @@ RUN Rscript -e 'if (!requireNamespace("BiocManager", quietly = TRUE)) install.pa
  Rscript -e 'if (!requireNamespace("dupRadar", quietly = TRUE)) BiocManager::install("dupRadar")'

 LABEL org.opencontainers.image.description="Companion container for running component dupradar"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:38Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:06Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/fastqc/.config.vsh.yaml
+++ b/target/executable/fastqc/.config.vsh.yaml
@@ -198,7 +198,7 @@ build_info:
  output: "target/executable/fastqc"
  executable: "target/executable/fastqc/fastqc"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/fastqc/fastqc
+++ b/target/executable/fastqc/fastqc
@@ -490,9 +490,9 @@ RUN apt-get update && \
  rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.description="Companion container for running component fastqc"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:30Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:51:58Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/fq_subsample/.config.vsh.yaml
+++ b/target/executable/fq_subsample/.config.vsh.yaml
@@ -177,7 +177,7 @@ build_info:
  output: "target/executable/fq_subsample"
  executable: "target/executable/fq_subsample/fq_subsample"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/fq_subsample/fq_subsample
+++ b/target/executable/fq_subsample/fq_subsample
@@ -485,9 +485,9 @@ cargo install --locked --path . && \
 mv /usr/local/fq/target/release/fq /usr/local/bin/

 LABEL org.opencontainers.image.description="Companion container for running component fq_subsample"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:30Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:51:58Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/getchromsizes/.config.vsh.yaml
+++ b/target/executable/getchromsizes/.config.vsh.yaml
@@ -167,7 +167,7 @@ build_info:
  output: "target/executable/getchromsizes"
  executable: "target/executable/getchromsizes/getchromsizes"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/getchromsizes/getchromsizes
+++ b/target/executable/getchromsizes/getchromsizes
@@ -480,9 +480,9 @@ make && \
 make install

 LABEL org.opencontainers.image.description="Companion container for running component getchromsizes"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:31Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:51:59Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/gtf2bed/.config.vsh.yaml
+++ b/target/executable/gtf2bed/.config.vsh.yaml
@@ -145,7 +145,7 @@ build_info:
  output: "target/executable/gtf2bed"
  executable: "target/executable/gtf2bed/gtf2bed"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/gtf2bed/gtf2bed
+++ b/target/executable/gtf2bed/gtf2bed
@@ -466,9 +466,9 @@ RUN apt-get update && \
  rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.description="Companion container for running component gtf2bed"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:42Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:10Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/gtf_filter/.config.vsh.yaml
+++ b/target/executable/gtf_filter/.config.vsh.yaml
@@ -155,7 +155,7 @@ build_info:
  output: "target/executable/gtf_filter"
  executable: "target/executable/gtf_filter/gtf_filter"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/gtf_filter/gtf_filter
+++ b/target/executable/gtf_filter/gtf_filter
@@ -470,9 +470,9 @@ function ViashDockerfile {
 FROM python:latest
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component gtf_filter"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:46Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:14Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/gunzip/.config.vsh.yaml
+++ b/target/executable/gunzip/.config.vsh.yaml
@@ -144,7 +144,7 @@ build_info:
  output: "target/executable/gunzip"
  executable: "target/executable/gunzip/gunzip"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/gunzip/gunzip
+++ b/target/executable/gunzip/gunzip
@@ -466,9 +466,9 @@ RUN apt-get update && \
  rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.description="Companion container for running component gunzip"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:31Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:51:59Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/kallisto/kallisto_index/.config.vsh.yaml
+++ b/target/executable/kallisto/kallisto_index/.config.vsh.yaml
@@ -155,7 +155,7 @@ build_info:
  output: "target/executable/kallisto/kallisto_index"
  executable: "target/executable/kallisto/kallisto_index/kallisto_index"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/kallisto/kallisto_index/kallisto_index
+++ b/target/executable/kallisto/kallisto_index/kallisto_index
@@ -471,9 +471,9 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \
 mv kallisto/kallisto /usr/local/bin/

 LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_index"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:44Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:12Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/kallisto/kallisto_quant/.config.vsh.yaml
+++ b/target/executable/kallisto/kallisto_quant/.config.vsh.yaml
@@ -253,7 +253,7 @@ build_info:
  output: "target/executable/kallisto/kallisto_quant"
  executable: "target/executable/kallisto/kallisto_quant/kallisto_quant"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/kallisto/kallisto_quant/kallisto_quant
+++ b/target/executable/kallisto/kallisto_quant/kallisto_quant
@@ -515,9 +515,9 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \
 mv kallisto/kallisto /usr/local/bin/

 LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_quant"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:44Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:12Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/multiqc_custom_biotype/.config.vsh.yaml
+++ b/target/executable/multiqc_custom_biotype/.config.vsh.yaml
@@ -170,7 +170,7 @@ build_info:
  output: "target/executable/multiqc_custom_biotype"
  executable: "target/executable/multiqc_custom_biotype/multiqc_custom_biotype"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/multiqc_custom_biotype/multiqc_custom_biotype
+++ b/target/executable/multiqc_custom_biotype/multiqc_custom_biotype
@@ -481,9 +481,9 @@ RUN apt-get update && \
 RUN pip install --upgrade pip

 LABEL org.opencontainers.image.description="Companion container for running component multiqc_custom_biotype"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:38Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:06Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/picard_markduplicates/.config.vsh.yaml
+++ b/target/executable/picard_markduplicates/.config.vsh.yaml
@@ -207,7 +207,7 @@ build_info:
  output: "target/executable/picard_markduplicates"
  executable: "target/executable/picard_markduplicates/picard_markduplicates"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/picard_markduplicates/picard_markduplicates
+++ b/target/executable/picard_markduplicates/picard_markduplicates
@@ -494,9 +494,9 @@ wget --no-check-certificate https://github.com/broadinstitute/picard/releases/do
 mv picard.jar /usr/local/bin 

 LABEL org.opencontainers.image.description="Companion container for running component picard_markduplicates"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:46Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:14Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/prepare_multiqc_input/.config.vsh.yaml
+++ b/target/executable/prepare_multiqc_input/.config.vsh.yaml
@@ -409,7 +409,7 @@ build_info:
  output: "target/executable/prepare_multiqc_input"
  executable: "target/executable/prepare_multiqc_input/prepare_multiqc_input"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/prepare_multiqc_input/prepare_multiqc_input
+++ b/target/executable/prepare_multiqc_input/prepare_multiqc_input
@@ -557,9 +557,9 @@ function ViashDockerfile {
 FROM ubuntu:22.04
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component prepare_multiqc_input"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:42Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:10Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/preprocess_transcripts_fasta/.config.vsh.yaml
+++ b/target/executable/preprocess_transcripts_fasta/.config.vsh.yaml
@@ -138,7 +138,7 @@ build_info:
  output: "target/executable/preprocess_transcripts_fasta"
  executable: "target/executable/preprocess_transcripts_fasta/preprocess_transcripts_fasta"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/preprocess_transcripts_fasta/preprocess_transcripts_fasta
+++ b/target/executable/preprocess_transcripts_fasta/preprocess_transcripts_fasta
@@ -462,9 +462,9 @@ function ViashDockerfile {
 FROM ubuntu:22.04
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component preprocess_transcripts_fasta"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:41Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:09Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/preseq_lcextrap/.config.vsh.yaml
+++ b/target/executable/preseq_lcextrap/.config.vsh.yaml
@@ -191,7 +191,7 @@ build_info:
  output: "target/executable/preseq_lcextrap"
  executable: "target/executable/preseq_lcextrap/preseq_lcextrap"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/preseq_lcextrap/preseq_lcextrap
+++ b/target/executable/preseq_lcextrap/preseq_lcextrap
@@ -495,9 +495,9 @@ mkdir build && cd build && \
 make && make install && make HAVE_HTSLIB=1 all 

 LABEL org.opencontainers.image.description="Companion container for running component preseq_lcextrap"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:31Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:51:59Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/qualimap/.config.vsh.yaml
+++ b/target/executable/qualimap/.config.vsh.yaml
@@ -271,7 +271,7 @@ build_info:
  output: "target/executable/qualimap"
  executable: "target/executable/qualimap/qualimap"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/qualimap/qualimap
+++ b/target/executable/qualimap/qualimap
@@ -537,9 +537,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
  Rscript -e 'remotes::install_cran(c("optparse"), repos = "https://cran.rstudio.com")'

 LABEL org.opencontainers.image.description="Companion container for running component qualimap"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:30Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:51:57Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml
+++ b/target/executable/rsem/rsem_calculate_expression/.config.vsh.yaml
@@ -299,7 +299,7 @@ build_info:
  output: "target/executable/rsem/rsem_calculate_expression"
  executable: "target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression
+++ b/target/executable/rsem/rsem_calculate_expression/rsem_calculate_expression
@@ -542,9 +542,9 @@ echo 'export PATH=$PATH:/usr/local/bin' >> ~/.bashrc && \
 /bin/bash -c "source /etc/profile && source ~/.bashrc && echo $PATH && which STAR"

 LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_calculate_expression"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:43Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:11Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/rsem/rsem_merge_counts/.config.vsh.yaml
+++ b/target/executable/rsem/rsem_merge_counts/.config.vsh.yaml
@@ -182,7 +182,7 @@ build_info:
  output: "target/executable/rsem/rsem_merge_counts"
  executable: "target/executable/rsem/rsem_merge_counts/rsem_merge_counts"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/rsem/rsem_merge_counts/rsem_merge_counts
+++ b/target/executable/rsem/rsem_merge_counts/rsem_merge_counts
@@ -483,9 +483,9 @@ function ViashDockerfile {
 FROM ubuntu:22.04
 ENTRYPOINT []
 LABEL org.opencontainers.image.description="Companion container for running component rsem rsem_merge_counts"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:43Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:11Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml
+++ b/target/executable/rseqc/rseqc_bamstat/.config.vsh.yaml
@@ -163,7 +163,7 @@ build_info:
  output: "target/executable/rseqc/rseqc_bamstat"
  executable: "target/executable/rseqc/rseqc_bamstat/rseqc_bamstat"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat
+++ b/target/executable/rseqc/rseqc_bamstat/rseqc_bamstat
@@ -477,9 +477,9 @@ RUN pip install --upgrade pip && \
  pip install --upgrade --no-cache-dir "RSeQC"

 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_bamstat"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:41Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:09Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml
+++ b/target/executable/rseqc/rseqc_inferexperiment/.config.vsh.yaml
@@ -186,7 +186,7 @@ build_info:
  output: "target/executable/rseqc/rseqc_inferexperiment"
  executable: "target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment
+++ b/target/executable/rseqc/rseqc_inferexperiment/rseqc_inferexperiment
@@ -487,9 +487,9 @@ RUN pip install --upgrade pip && \
  pip install --upgrade --no-cache-dir "RSeQC"

 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_inferexperiment"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:39Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:07Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/rseqc/rseqc_innerdistance/.config.vsh.yaml
+++ b/target/executable/rseqc/rseqc_innerdistance/.config.vsh.yaml
@@ -272,7 +272,7 @@ build_info:
  output: "target/executable/rseqc/rseqc_innerdistance"
  executable: "target/executable/rseqc/rseqc_innerdistance/rseqc_innerdistance"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/rseqc/rseqc_innerdistance/rseqc_innerdistance
+++ b/target/executable/rseqc/rseqc_innerdistance/rseqc_innerdistance
@@ -529,9 +529,9 @@ RUN pip install --upgrade pip && \
  pip install --upgrade --no-cache-dir "RSeQC"

 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_innerdistance"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:40Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:08Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/rseqc/rseqc_junctionannotation/.config.vsh.yaml
+++ b/target/executable/rseqc/rseqc_junctionannotation/.config.vsh.yaml
@@ -260,7 +260,7 @@ build_info:
  output: "target/executable/rseqc/rseqc_junctionannotation"
  executable: "target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation
+++ b/target/executable/rseqc/rseqc_junctionannotation/rseqc_junctionannotation
@@ -519,9 +519,9 @@ RUN pip install --upgrade pip && \
  pip install --upgrade --no-cache-dir "RSeQC"

 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_junctionannotation"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:40Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:08Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/rseqc/rseqc_junctionsaturation/.config.vsh.yaml
+++ b/target/executable/rseqc/rseqc_junctionsaturation/.config.vsh.yaml
@@ -249,7 +249,7 @@ build_info:
  output: "target/executable/rseqc/rseqc_junctionsaturation"
  executable: "target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation
+++ b/target/executable/rseqc/rseqc_junctionsaturation/rseqc_junctionsaturation
@@ -522,9 +522,9 @@ RUN pip install --upgrade pip && \
  pip install --upgrade --no-cache-dir "RSeQC"

 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_junctionsaturation"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:40Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:08Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/rseqc/rseqc_readdistribution/.config.vsh.yaml
+++ b/target/executable/rseqc/rseqc_readdistribution/.config.vsh.yaml
@@ -162,7 +162,7 @@ build_info:
  output: "target/executable/rseqc/rseqc_readdistribution"
  executable: "target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution
+++ b/target/executable/rseqc/rseqc_readdistribution/rseqc_readdistribution
@@ -474,9 +474,9 @@ RUN pip install --upgrade pip && \
  pip install --upgrade --no-cache-dir "RSeQC"

 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_readdistribution"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:41Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:09Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/rseqc/rseqc_readduplication/.config.vsh.yaml
+++ b/target/executable/rseqc/rseqc_readduplication/.config.vsh.yaml
@@ -211,7 +211,7 @@ build_info:
  output: "target/executable/rseqc/rseqc_readduplication"
  executable: "target/executable/rseqc/rseqc_readduplication/rseqc_readduplication"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/rseqc/rseqc_readduplication/rseqc_readduplication
+++ b/target/executable/rseqc/rseqc_readduplication/rseqc_readduplication
@@ -499,9 +499,9 @@ RUN pip install --upgrade pip && \
  pip install --upgrade --no-cache-dir "RSeQC"

 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_readduplication"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:39Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:07Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/rseqc/rseqc_tin/.config.vsh.yaml
+++ b/target/executable/rseqc/rseqc_tin/.config.vsh.yaml
@@ -214,7 +214,7 @@ build_info:
  output: "target/executable/rseqc/rseqc_tin"
  executable: "target/executable/rseqc/rseqc_tin/rseqc_tin"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/rseqc/rseqc_tin/rseqc_tin
+++ b/target/executable/rseqc/rseqc_tin/rseqc_tin
@@ -501,9 +501,9 @@ RUN apt-get update && \
 RUN pip3 install RSeQC

 LABEL org.opencontainers.image.description="Companion container for running component rseqc rseqc_tin"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:39Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:07Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/sortmerna/.config.vsh.yaml
+++ b/target/executable/sortmerna/.config.vsh.yaml
@@ -198,7 +198,7 @@ build_info:
  output: "target/executable/sortmerna"
  executable: "target/executable/sortmerna/sortmerna"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/sortmerna/sortmerna
+++ b/target/executable/sortmerna/sortmerna
@@ -492,9 +492,9 @@ wget --no-check-certificate https://github.com/sortmerna/sortmerna/releases/down
 bash sortmerna-4.3.6-Linux.sh --skip-license

 LABEL org.opencontainers.image.description="Companion container for running component sortmerna"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:46Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:14Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/stringtie/.config.vsh.yaml
+++ b/target/executable/stringtie/.config.vsh.yaml
@@ -216,7 +216,7 @@ build_info:
  output: "target/executable/stringtie"
  executable: "target/executable/stringtie/stringtie"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/stringtie/stringtie
+++ b/target/executable/stringtie/stringtie
@@ -496,9 +496,9 @@ tar -xzf stringtie-2.2.1.Linux_x86_64.tar.gz && \
 cp stringtie-2.2.1.Linux_x86_64/stringtie /usr/local/bin/

 LABEL org.opencontainers.image.description="Companion container for running component stringtie"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:43Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:11Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/summarizedexperiment/.config.vsh.yaml
+++ b/target/executable/summarizedexperiment/.config.vsh.yaml
@@ -199,7 +199,7 @@ build_info:
  output: "target/executable/summarizedexperiment"
  executable: "target/executable/summarizedexperiment/summarizedexperiment"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/summarizedexperiment/summarizedexperiment
+++ b/target/executable/summarizedexperiment/summarizedexperiment
@@ -487,9 +487,9 @@ RUN Rscript -e 'if (!requireNamespace("BiocManager", quietly = TRUE)) install.pa
  Rscript -e 'if (!requireNamespace("tximeta", quietly = TRUE)) BiocManager::install("tximeta")'

 LABEL org.opencontainers.image.description="Companion container for running component summarizedexperiment"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:47Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:15Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/trimgalore/.config.vsh.yaml
+++ b/target/executable/trimgalore/.config.vsh.yaml
@@ -788,7 +788,7 @@ build_info:
  output: "target/executable/trimgalore"
  executable: "target/executable/trimgalore/trimgalore"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/trimgalore/trimgalore
+++ b/target/executable/trimgalore/trimgalore
@@ -858,9 +858,9 @@ ENTRYPOINT []
 RUN echo "TrimGalore: `trim_galore --version | sed -n 's/.*version\s\+\([0-9]\+\.[0-9]\+\.[0-9]\+\).*/\1/p'`" > /var/software_versions.txt

 LABEL org.opencontainers.image.description="Companion container for running component trimgalore"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:45Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:13Z"
 LABEL org.opencontainers.image.source="https://github.com/FelixKrueger/TrimGalore"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/tx2gene/.config.vsh.yaml
+++ b/target/executable/tx2gene/.config.vsh.yaml
@@ -192,7 +192,7 @@ build_info:
  output: "target/executable/tx2gene"
  executable: "target/executable/tx2gene/tx2gene"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/tx2gene/tx2gene
+++ b/target/executable/tx2gene/tx2gene
@@ -487,9 +487,9 @@ RUN apt-get update && \
 RUN pip install --upgrade pip

 LABEL org.opencontainers.image.description="Companion container for running component tx2gene"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:42Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:10Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/tximport/.config.vsh.yaml
+++ b/target/executable/tximport/.config.vsh.yaml
@@ -247,7 +247,7 @@ build_info:
  output: "target/executable/tximport"
  executable: "target/executable/tximport/tximport"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/tximport/tximport
+++ b/target/executable/tximport/tximport
@@ -508,9 +508,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
  Rscript -e 'remotes::install_cran(c("jsonlite"), repos = "https://cran.rstudio.com")'

 LABEL org.opencontainers.image.description="Companion container for running component tximport"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:36Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:04Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/ucsc/bedclip/.config.vsh.yaml
+++ b/target/executable/ucsc/bedclip/.config.vsh.yaml
@@ -164,7 +164,7 @@ build_info:
  output: "target/executable/ucsc/bedclip"
  executable: "target/executable/ucsc/bedclip/bedclip"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/ucsc/bedclip/bedclip
+++ b/target/executable/ucsc/bedclip/bedclip
@@ -473,9 +473,9 @@ RUN apt-get update && \
 RUN rsync -aP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/linux.x86_64/bedClip /usr/local/bin/

 LABEL org.opencontainers.image.description="Companion container for running component ucsc bedclip"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:37Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:05Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/ucsc/bedgraphtobigwig/.config.vsh.yaml
+++ b/target/executable/ucsc/bedgraphtobigwig/.config.vsh.yaml
@@ -164,7 +164,7 @@ build_info:
  output: "target/executable/ucsc/bedgraphtobigwig"
  executable: "target/executable/ucsc/bedgraphtobigwig/bedgraphtobigwig"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/ucsc/bedgraphtobigwig/bedgraphtobigwig
+++ b/target/executable/ucsc/bedgraphtobigwig/bedgraphtobigwig
@@ -473,9 +473,9 @@ RUN apt-get update && \
 RUN rsync -aP rsync://hgdownload.soe.ucsc.edu/genome/admin/exe/linux.x86_64/bedGraphToBigWig /usr/local/bin/

 LABEL org.opencontainers.image.description="Companion container for running component ucsc bedgraphtobigwig"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:38Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:06Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/umitools/umitools_dedup/.config.vsh.yaml
+++ b/target/executable/umitools/umitools_dedup/.config.vsh.yaml
@@ -195,7 +195,7 @@ build_info:
  output: "target/executable/umitools/umitools_dedup"
  executable: "target/executable/umitools/umitools_dedup/umitools_dedup"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/umitools/umitools_dedup/umitools_dedup
+++ b/target/executable/umitools/umitools_dedup/umitools_dedup
@@ -489,9 +489,9 @@ RUN pip install --upgrade pip && \
  pip install --upgrade --no-cache-dir "umi_tools"

 LABEL org.opencontainers.image.description="Companion container for running component umitools umitools_dedup"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:44Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:12Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/umitools/umitools_extract/.config.vsh.yaml
+++ b/target/executable/umitools/umitools_extract/.config.vsh.yaml
@@ -253,7 +253,7 @@ build_info:
  output: "target/executable/umitools/umitools_extract"
  executable: "target/executable/umitools/umitools_extract/umitools_extract"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/umitools/umitools_extract/umitools_extract
+++ b/target/executable/umitools/umitools_extract/umitools_extract
@@ -521,9 +521,9 @@ RUN pip install --upgrade pip && \
  pip install --upgrade --no-cache-dir "umi_tools"

 LABEL org.opencontainers.image.description="Companion container for running component umitools umitools_extract"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:45Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:13Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/umitools_prepareforquant/.config.vsh.yaml
+++ b/target/executable/umitools_prepareforquant/.config.vsh.yaml
@@ -156,7 +156,7 @@ build_info:
  output: "target/executable/umitools_prepareforquant"
  executable: "target/executable/umitools_prepareforquant/umitools_prepareforquant"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/executable/umitools_prepareforquant/umitools_prepareforquant
+++ b/target/executable/umitools_prepareforquant/umitools_prepareforquant
@@ -473,9 +473,9 @@ RUN pip install --upgrade pip && \
  pip install --upgrade --no-cache-dir "umi_tools" "pysam"

 LABEL org.opencontainers.image.description="Companion container for running component umitools_prepareforquant"
-LABEL org.opencontainers.image.created="2024-09-30T11:39:47Z"
+LABEL org.opencontainers.image.created="2024-09-30T11:52:15Z"
 LABEL org.opencontainers.image.source="https://x-access-token/ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
-LABEL org.opencontainers.image.revision="55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+LABEL org.opencontainers.image.revision="7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
 LABEL org.opencontainers.image.version="multiple_fixes"

 VIASHDOCKER
--- a/target/executable/workflows/genome_alignment_and_quant/.config.vsh.yaml
+++ b/target/executable/workflows/genome_alignment_and_quant/.config.vsh.yaml
@@ -603,7 +603,7 @@ build_info:
  output: "target/executable/workflows/genome_alignment_and_quant"
  executable: "target/executable/workflows/genome_alignment_and_quant/genome_alignment_and_quant"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
  dependencies:
  - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/star/star_align_reads"
--- a/target/executable/workflows/merge_quant_results/.config.vsh.yaml
+++ b/target/executable/workflows/merge_quant_results/.config.vsh.yaml
@@ -278,7 +278,7 @@ build_info:
  output: "target/executable/workflows/merge_quant_results"
  executable: "target/executable/workflows/merge_quant_results/merge_quant_results"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
  dependencies:
  - "target/nextflow/tx2gene"
--- a/target/executable/workflows/post_processing/.config.vsh.yaml
+++ b/target/executable/workflows/post_processing/.config.vsh.yaml
@@ -486,7 +486,7 @@ build_info:
  output: "target/executable/workflows/post_processing"
  executable: "target/executable/workflows/post_processing/post_processing"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
  dependencies:
  - "target/nextflow/picard_markduplicates"
--- a/target/executable/workflows/post_processing/post_processing
+++ b/target/executable/workflows/post_processing/post_processing
@@ -1307,7 +1307,6 @@ workflow run_wf {
          def mod_state = state.findAll { key, value -> value instanceof java.nio.file.Path && value.exists() }
          [ id, mod_state ]
        }
-        | niceView()

        | setState (
            "processed_genome_bam": "processed_genome_bam", 
--- a/target/executable/workflows/pre_processing/.config.vsh.yaml
+++ b/target/executable/workflows/pre_processing/.config.vsh.yaml
@@ -673,7 +673,7 @@ build_info:
  output: "target/executable/workflows/pre_processing"
  executable: "target/executable/workflows/pre_processing/pre_processing"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
  dependencies:
  - "target/nextflow/fastqc"
--- a/target/executable/workflows/prepare_genome/.config.vsh.yaml
+++ b/target/executable/workflows/prepare_genome/.config.vsh.yaml
@@ -496,7 +496,7 @@ build_info:
  output: "target/executable/workflows/prepare_genome"
  executable: "target/executable/workflows/prepare_genome/prepare_genome"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
  dependencies:
  - "target/nextflow/gunzip"
--- a/target/executable/workflows/pseudo_alignment_and_quant/.config.vsh.yaml
+++ b/target/executable/workflows/pseudo_alignment_and_quant/.config.vsh.yaml
@@ -283,7 +283,7 @@ build_info:
  output: "target/executable/workflows/pseudo_alignment_and_quant"
  executable: "target/executable/workflows/pseudo_alignment_and_quant/pseudo_alignment_and_quant"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
  dependencies:
  - "target/dependencies/vsh/vsh/biobox/v0.2.0/nextflow/salmon/salmon_quant"
--- a/target/executable/workflows/quality_control/.config.vsh.yaml
+++ b/target/executable/workflows/quality_control/.config.vsh.yaml
@@ -1596,7 +1596,7 @@ build_info:
  output: "target/executable/workflows/quality_control"
  executable: "target/executable/workflows/quality_control/quality_control"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
  dependencies:
  - "target/nextflow/rseqc/rseqc_bamstat"
--- a/target/executable/workflows/rnaseq/.config.vsh.yaml
+++ b/target/executable/workflows/rnaseq/.config.vsh.yaml
@@ -2117,7 +2117,7 @@ build_info:
  output: "target/executable/workflows/rnaseq"
  executable: "target/executable/workflows/rnaseq/rnaseq"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
  dependencies:
  - "target/nextflow/workflows/prepare_genome"
--- a/target/nextflow/bbmap_bbsplit/.config.vsh.yaml
+++ b/target/nextflow/bbmap_bbsplit/.config.vsh.yaml
@@ -238,7 +238,7 @@ build_info:
  output: "target/nextflow/bbmap_bbsplit"
  executable: "target/nextflow/bbmap_bbsplit/main.nf"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/nextflow/bbmap_bbsplit/main.nf
+++ b/target/nextflow/bbmap_bbsplit/main.nf
@@ -3104,7 +3104,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/bbmap_bbsplit",
    "viash_version" : "0.9.0",
-    "git_commit" : "55878e4519aa920a419bb99a9b3afc8307b6c6e3",
+    "git_commit" : "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d",
    "git_remote" : "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
  },
  "package_config" : {
--- a/target/nextflow/bedtools_genomecov/.config.vsh.yaml
+++ b/target/nextflow/bedtools_genomecov/.config.vsh.yaml
@@ -178,7 +178,7 @@ build_info:
  output: "target/nextflow/bedtools_genomecov"
  executable: "target/nextflow/bedtools_genomecov/main.nf"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/nextflow/bedtools_genomecov/main.nf
+++ b/target/nextflow/bedtools_genomecov/main.nf
@@ -3031,7 +3031,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/bedtools_genomecov",
    "viash_version" : "0.9.0",
-    "git_commit" : "55878e4519aa920a419bb99a9b3afc8307b6c6e3",
+    "git_commit" : "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d",
    "git_remote" : "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
  },
  "package_config" : {
--- a/target/nextflow/cat_additional_fasta/.config.vsh.yaml
+++ b/target/nextflow/cat_additional_fasta/.config.vsh.yaml
@@ -182,7 +182,7 @@ build_info:
  output: "target/nextflow/cat_additional_fasta"
  executable: "target/nextflow/cat_additional_fasta/main.nf"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/nextflow/cat_additional_fasta/main.nf
+++ b/target/nextflow/cat_additional_fasta/main.nf
@@ -3032,7 +3032,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/cat_additional_fasta",
    "viash_version" : "0.9.0",
-    "git_commit" : "55878e4519aa920a419bb99a9b3afc8307b6c6e3",
+    "git_commit" : "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d",
    "git_remote" : "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
  },
  "package_config" : {
--- a/target/nextflow/cat_fastq/.config.vsh.yaml
+++ b/target/nextflow/cat_fastq/.config.vsh.yaml
@@ -169,7 +169,7 @@ build_info:
  output: "target/nextflow/cat_fastq"
  executable: "target/nextflow/cat_fastq/main.nf"
  viash_version: "0.9.0"
-  git_commit: "55878e4519aa920a419bb99a9b3afc8307b6c6e3"
+  git_commit: "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d"
  git_remote: "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
 package_config:
  version: "multiple_fixes"
--- a/target/nextflow/cat_fastq/main.nf
+++ b/target/nextflow/cat_fastq/main.nf
@@ -3023,7 +3023,7 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/cat_fastq",
    "viash_version" : "0.9.0",
-    "git_commit" : "55878e4519aa920a419bb99a9b3afc8307b6c6e3",
+    "git_commit" : "7a7ce42c4dcd4a79b03823641bb8a4408ba9404d",
    "git_remote" : "https://x-access-token:ghs_ltJPjPqiv1bdiWEoMNLoIT9NWntapQ0mtFGy@github.com/viash-hub/rnaseq"
  },
  "package_config" : {
--- a/Show More
+++ b/Show More