vsh/rnaseq
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
13 Commits 16 Branches 4 Tags
b64954426749103875b473af9a0a2f35e521c4c6
Commit Graph

13 Commits

Author SHA1 Message Date
CI
b649544267 Build branch main with version main (d63250a) 
Build pipeline: viash-hub.rnaseq.main-p26ls

Source commit: d63250ae70

Source message: add checks
 2024-11-27 17:19:29 +00:00
CI
93ac6aad2e Build branch main with version main (0c8a7eb) 
Build pipeline: viash-hub.rnaseq.main-nn8dl

Source commit: 0c8a7eb648

Source message: remove citation
 2024-11-27 11:54:48 +00:00
CI
14e0d12189 Build branch main with version main (ce40a4a) 
Build pipeline: viash-hub.rnaseq.main-b6jtr

Source commit: ce40a4a6d9

Source message: add unit tests
 2024-11-27 09:19:16 +00:00
CI
20fef7a87e Build branch main with version main (a4f2c7d) 
Build pipeline: viash-hub.rnaseq.main-f78nc

Source commit: a4f2c7d5a1

Source message: multiple minor fixes
 2024-11-21 08:37:00 +00:00
CI
2d86d22f22 Build branch main with version main (a04f9ba) 
Build pipeline: viash-hub.rnaseq.main-xf2ql

Source commit: a04f9bab8a

Source message: avoid generating STAR index if alignment is skipped
 2024-11-13 12:53:08 +00:00
CI
bc17b94cd5 Build branch main with version main (5fbd530) 
Build pipeline: viash-hub.rnaseq.main-rfpzb

Source commit: 5fbd530a7c

Source message: add arguments to skip qc components
 2024-11-13 10:26:31 +00:00
CI
fe41adb0c7 Build branch main with version main (05d48ac) 
Build pipeline: viash-hub.rnaseq.main-c7sdt

Source commit: 05d48ac2f8

Source message: Multiple fixes (#26)

* unset argument if not paired

* fix argument name

* add count_read_pairs argument

* output star log

* move biotypes header file into multiqc_custom_biotype component

* move deseq2 header files into deseq2_qc component

* update output defaults

* use biobox main

* add parameters to example

* update component

* update component

* ribo database processing moved to workflow

* clean code, remove unused arguments
 2024-10-25 09:08:46 +00:00
CI
54557aa596 Build branch main with version main (fd0354d) 
Build pipeline: vsh-ci-template-w7zwh

Source commit: fd0354dae8

Source message: Point to new assets dir
 2024-10-04 07:16:21 +00:00
CI
2fadce912e Build branch main with version main (fd0354d) 
Build pipeline: viash-hub.rnaseq.main-kqfj7

Source commit: fd0354dae8

Source message: Point to new assets dir
 2024-10-03 16:22:26 +00:00
CI
c106022744 Build branch main with version main (1d87dc7) 
Build pipeline: viash-hub.rnaseq.main-g2rlq

Source commit: 1d87dc7c24

Source message: Multiple fixes (#23)

* multiple fixes

* update arguments and add test

* fix biobox module calls

* fix dependency

* add rsem merge counts

* exclude general stats in multiqc report

* output markduplicates metrics

* rename output reference files
 2024-10-01 10:12:28 +00:00
CI
9b29e37466 Build branch main with version main (64aad6a) 
Build pipeline: viash-hub.rnaseq.main-4gbdz

Source commit: 64aad6a006

Source message: Merge pull request #22 from viash-hub/define_repositories_in_package_config

define dependency repositories once in the package config
 2024-09-14 09:49:51 +00:00
CI
92b5a42360 Build branch main with version main (cb9b328) 
Build pipeline: viash-hub.rnaseq.main-mf5kg

Source commit: cb9b328834

Source message: Update pointers to biobox and craftbox
 2024-09-13 11:32:59 +00:00
CI
1ebb61f1e8 Build branch main with version main (1e1ffb3) 
Build pipeline: vsh-ci-dev-jsbwk

Source commit: 1e1ffb315f

Source message: Merge pull request #17 from viash-hub/add_biobox_modules

- Migrate a number of components to biobox
- Fix tests
- Reduce size of test resources
- Prepare for Viash Hub
 2024-09-13 07:41:13 +00:00