vsh/biobox
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Build branch qualimap with version qualimap (d476dee)

Browse Source 
Build pipeline: viash-hub.biobox.qualimap-vm78f

Source commit: d476dee6bd

Source message: fix doi
This commit is contained in:
CI
2024-08-20 21:22:30 +00:00
parent 9e660371d7
commit 7bfa6ba6a3
179 changed files with 241 additions and 245 deletions
Download Patch File Download Diff File Expand all files Collapse all files

3
src/qualimap/qualimap_rnaseq/config.vsh.yaml
View File

@@ -1,5 +1,4 @@
name: qualimap_rnaseq
namespace: qualimap
name: "qualimap"
keywords: [RNA-seq, quality control, QC Report]
description: |
Qualimap RNA-seq QC reports quality control metrics and bias estimations

2
target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
View File

@@ -235,7 +235,7 @@ build_info:
output: "target/executable/agat/agat_convert_bed2gff"
executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
View File

@@ -514,9 +514,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff"
LABEL org.opencontainers.image.created="2024-08-20T21:05:37Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:02Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
View File

@@ -225,7 +225,7 @@ build_info:
output: "target/executable/agat/agat_convert_embl2gff"
executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
View File

@@ -504,9 +504,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff"
LABEL org.opencontainers.image.created="2024-08-20T21:05:37Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:01Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
View File

@@ -228,7 +228,7 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gff2gtf"
executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
View File

@@ -518,9 +518,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf"
LABEL org.opencontainers.image.created="2024-08-20T21:05:37Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:02Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
View File

@@ -188,7 +188,7 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gff2tsv"
executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
View File

@@ -483,9 +483,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv"
LABEL org.opencontainers.image.created="2024-08-20T21:05:37Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:01Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
View File

@@ -195,7 +195,7 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gxf2gxf"
executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
View File

@@ -492,9 +492,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf"
LABEL org.opencontainers.image.created="2024-08-20T21:05:36Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:01Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/arriba/.config.vsh.yaml
View File

@@ -706,7 +706,7 @@ build_info:
output: "target/executable/arriba"
executable: "target/executable/arriba/arriba"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/arriba/arriba
View File

@@ -753,9 +753,9 @@ RUN arriba -h | grep 'Version:' 2>&1 | sed 's/Version:\s\(.*\)/arriba: "\1"/' >
LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
LABEL org.opencontainers.image.description="Companion container for running component arriba"
LABEL org.opencontainers.image.created="2024-08-20T21:05:39Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:03Z"
LABEL org.opencontainers.image.source="https://github.com/suhrig/arriba"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/bcl_convert/.config.vsh.yaml
View File

@@ -418,7 +418,7 @@ build_info:
output: "target/executable/bcl_convert"
executable: "target/executable/bcl_convert/bcl_convert"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bcl_convert/bcl_convert
View File

@@ -598,9 +598,9 @@ RUN echo "bcl-convert: \"$(bcl-convert -V 2>&1 >/dev/null | sed -n '/Version/ s/
LABEL org.opencontainers.image.authors="Toni Verbeiren, Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component bcl_convert"
LABEL org.opencontainers.image.created="2024-08-20T21:05:38Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:03Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
View File

@@ -270,7 +270,7 @@ build_info:
output: "target/executable/bd_rhapsody/bd_rhapsody_make_reference"
executable: "target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference
View File

@@ -548,9 +548,9 @@ RUN echo "bdgenomics/rhapsody: 2.2.1" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_make_reference"
LABEL org.opencontainers.image.created="2024-08-20T21:05:41Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:07Z"
LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1/Extra_Utilities/"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
View File

@@ -187,7 +187,7 @@ build_info:
output: "target/executable/bedtools/bedtools_bamtofastq"
executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
View File

@@ -482,9 +482,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq"
LABEL org.opencontainers.image.created="2024-08-20T21:05:27Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:51Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
View File

@@ -214,7 +214,7 @@ build_info:
output: "target/executable/bedtools/bedtools_bedtobam"
executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
View File

@@ -495,9 +495,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam"
LABEL org.opencontainers.image.created="2024-08-20T21:05:27Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:52Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
View File

@@ -232,7 +232,7 @@ build_info:
output: "target/executable/bedtools/bedtools_getfasta"
executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
View File

@@ -525,9 +525,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta"
LABEL org.opencontainers.image.created="2024-08-20T21:05:26Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:51Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
View File

@@ -410,7 +410,7 @@ build_info:
output: "target/executable/bedtools/bedtools_intersect"
executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_intersect/bedtools_intersect
View File

@@ -632,9 +632,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect"
LABEL org.opencontainers.image.created="2024-08-20T21:05:26Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:51Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/bedtools/bedtools_sort/.config.vsh.yaml
View File

@@ -222,7 +222,7 @@ build_info:
output: "target/executable/bedtools/bedtools_sort"
executable: "target/executable/bedtools/bedtools_sort/bedtools_sort"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/bedtools/bedtools_sort/bedtools_sort
View File

@@ -508,9 +508,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort"
LABEL org.opencontainers.image.created="2024-08-20T21:05:27Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:52Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/busco/busco_download_datasets/.config.vsh.yaml
View File

@@ -158,7 +158,7 @@ build_info:
output: "target/executable/busco/busco_download_datasets"
executable: "target/executable/busco/busco_download_datasets/busco_download_datasets"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/busco/busco_download_datasets/busco_download_datasets
View File

@@ -474,9 +474,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets"
LABEL org.opencontainers.image.created="2024-08-20T21:05:35Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:00Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/busco/busco_list_datasets/.config.vsh.yaml
View File

@@ -145,7 +145,7 @@ build_info:
output: "target/executable/busco/busco_list_datasets"
executable: "target/executable/busco/busco_list_datasets/busco_list_datasets"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/busco/busco_list_datasets/busco_list_datasets
View File

@@ -464,9 +464,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets"
LABEL org.opencontainers.image.created="2024-08-20T21:05:36Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:00Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/busco/busco_run/.config.vsh.yaml
View File

@@ -423,7 +423,7 @@ build_info:
output: "target/executable/busco/busco_run"
executable: "target/executable/busco/busco_run/busco_run"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/busco/busco_run/busco_run
View File

@@ -631,9 +631,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component busco busco_run"
LABEL org.opencontainers.image.created="2024-08-20T21:05:36Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:00Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/cutadapt/.config.vsh.yaml
View File

@@ -740,7 +740,7 @@ build_info:
output: "target/executable/cutadapt"
executable: "target/executable/cutadapt/cutadapt"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/cutadapt/cutadapt
View File

@@ -830,9 +830,9 @@ RUN cutadapt --version | sed 's/\(.*\)/cutadapt: "\1"/' > /var/software_versions
LABEL org.opencontainers.image.authors="Toni Verbeiren"
LABEL org.opencontainers.image.description="Companion container for running component cutadapt"
LABEL org.opencontainers.image.created="2024-08-20T21:05:40Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:05Z"
LABEL org.opencontainers.image.source="https://github.com/marcelm/cutadapt"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/falco/.config.vsh.yaml
View File

@@ -317,7 +317,7 @@ build_info:
output: "target/executable/falco"
executable: "target/executable/falco/falco"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/falco/falco
View File

@@ -588,9 +588,9 @@ RUN echo "falco: \"$(falco -v | sed -n 's/^falco //p')\"" > /var/software_versio
LABEL org.opencontainers.image.authors="Toni Verbeiren"
LABEL org.opencontainers.image.description="Companion container for running component falco"
LABEL org.opencontainers.image.created="2024-08-20T21:05:41Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:06Z"
LABEL org.opencontainers.image.source="https://github.com/smithlabcode/falco"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/fastp/.config.vsh.yaml
View File

@@ -1083,7 +1083,7 @@ build_info:
output: "target/executable/fastp"
executable: "target/executable/fastp/fastp"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/fastp/fastp
View File

@@ -1027,9 +1027,9 @@ RUN fastp --version 2>&1 | sed 's# #: "#;s#$#"#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
LABEL org.opencontainers.image.description="Companion container for running component fastp"
LABEL org.opencontainers.image.created="2024-08-20T21:05:38Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:02Z"
LABEL org.opencontainers.image.source="https://github.com/OpenGene/fastp"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/featurecounts/.config.vsh.yaml
View File

@@ -645,7 +645,7 @@ build_info:
output: "target/executable/featurecounts"
executable: "target/executable/featurecounts/featurecounts"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/featurecounts/featurecounts
View File

@@ -753,9 +753,9 @@ RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/
LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
LABEL org.opencontainers.image.description="Companion container for running component featurecounts"
LABEL org.opencontainers.image.created="2024-08-20T21:05:34Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:58Z"
LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/gffread/.config.vsh.yaml
View File

@@ -685,7 +685,7 @@ build_info:
output: "target/executable/gffread"
executable: "target/executable/gffread/gffread"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/gffread/gffread
View File

@@ -806,9 +806,9 @@ RUN echo "gffread: \"$(gffread --version 2>&1)\"" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component gffread"
LABEL org.opencontainers.image.created="2024-08-20T21:05:25Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:50Z"
LABEL org.opencontainers.image.source="https://github.com/gpertea/gffread"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/lofreq/lofreq_call/.config.vsh.yaml
View File

@@ -507,7 +507,7 @@ build_info:
output: "target/executable/lofreq/lofreq_call"
executable: "target/executable/lofreq/lofreq_call/lofreq_call"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/lofreq/lofreq_call/lofreq_call
View File

@@ -655,9 +655,9 @@ echo "lofreq: $version" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Kai Waldrant"
LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call"
LABEL org.opencontainers.image.created="2024-08-20T21:05:33Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:58Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
View File

@@ -215,7 +215,7 @@ build_info:
output: "target/executable/lofreq/lofreq_indelqual"
executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
View File

@@ -500,9 +500,9 @@ echo "lofreq: $version" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Kai Waldrant"
LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual"
LABEL org.opencontainers.image.created="2024-08-20T21:05:33Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:57Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/multiqc/.config.vsh.yaml
View File

@@ -456,7 +456,7 @@ build_info:
output: "target/executable/multiqc"
executable: "target/executable/multiqc/multiqc"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/multiqc/multiqc
View File

@@ -636,9 +636,9 @@ RUN multiqc --version | sed 's/multiqc, version\s\(.*\)/multiqc: "\1"/' > /var/s
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component multiqc"
LABEL org.opencontainers.image.created="2024-08-20T21:05:41Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:06Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/pear/.config.vsh.yaml
View File

@@ -398,7 +398,7 @@ build_info:
output: "target/executable/pear"
executable: "target/executable/pear/pear"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/pear/pear
View File

@@ -596,9 +596,9 @@ echo "pear: $version" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Kai Waldrant"
LABEL org.opencontainers.image.description="Companion container for running component pear"
LABEL org.opencontainers.image.created="2024-08-20T21:05:28Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:52Z"
LABEL org.opencontainers.image.source="https://github.com/tseemann/PEAR"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

9
target/executable/qualimap/qualimap_rnaseq/.config.vsh.yaml → target/executable/qualimap/.config.vsh.yaml
View File

@@ -1,5 +1,4 @@
name: "qualimap_rnaseq"
namespace: "qualimap"
name: "qualimap"
version: "qualimap"
authors:
- name: "Dorien Roosen"
@@ -279,10 +278,10 @@ build_info:
config: "src/qualimap/qualimap_rnaseq/config.vsh.yaml"
runner: "executable"
engine: "docker|native"
output: "target/executable/qualimap/qualimap_rnaseq"
executable: "target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq"
output: "target/executable/qualimap"
executable: "target/executable/qualimap/qualimap"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

20
target/executable/qualimap/qualimap_rnaseq/qualimap_rnaseq → target/executable/qualimap/qualimap
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# qualimap_rnaseq qualimap
# qualimap qualimap
#
# This wrapper script is auto-generated by viash 0.9.0-RC6 and is thus a
# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
@@ -165,8 +165,8 @@ VIASH_META_RESOURCES_DIR=`ViashSourceDir ${BASH_SOURCE[0]}`
VIASH_TARGET_DIR=`ViashFindTargetDir $VIASH_META_RESOURCES_DIR`
# define meta fields
VIASH_META_NAME="qualimap_rnaseq"
VIASH_META_FUNCTIONALITY_NAME="qualimap_rnaseq"
VIASH_META_NAME="qualimap"
VIASH_META_FUNCTIONALITY_NAME="qualimap"
VIASH_META_EXECUTABLE="$VIASH_META_RESOURCES_DIR/$VIASH_META_NAME"
VIASH_META_CONFIG="$VIASH_META_RESOURCES_DIR/.config.vsh.yaml"
VIASH_META_TEMP_DIR="$VIASH_TEMP"
@@ -174,7 +174,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "qualimap_rnaseq qualimap"
echo "qualimap qualimap"
echo ""
echo "Qualimap RNA-seq QC reports quality control metrics and bias estimations"
echo "which are specific for whole transcriptome sequencing, including reads genomic"
@@ -540,10 +540,10 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
Rscript -e 'remotes::install_cran(c("optparse"), repos = "https://cran.rstudio.com")'
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component qualimap qualimap_rnaseq"
LABEL org.opencontainers.image.created="2024-08-20T21:05:32Z"
LABEL org.opencontainers.image.description="Companion container for running component qualimap"
LABEL org.opencontainers.image.created="2024-08-20T21:04:56Z"
LABEL org.opencontainers.image.source="https://bitbucket.org/kokonech/qualimap/commits/branch/master"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER
@@ -667,7 +667,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "qualimap_rnaseq qualimap"
echo "qualimap qualimap"
exit
;;
--bam)
@@ -866,7 +866,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/qualimap/qualimap_rnaseq:qualimap'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/biobox/qualimap:qualimap'
fi
# print dockerfile
@@ -1234,7 +1234,7 @@ fi
ViashDebug "Running command: $(echo $VIASH_CMD)"
cat << VIASHEOF | eval $VIASH_CMD
set -e
tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-qualimap_rnaseq-XXXXXX").sh
tempscript=\$(mktemp "$VIASH_META_TEMP_DIR/viash-run-qualimap-XXXXXX").sh
function clean_up {
rm "\$tempscript"
}

2
target/executable/salmon/salmon_index/.config.vsh.yaml
View File

@@ -277,7 +277,7 @@ build_info:
output: "target/executable/salmon/salmon_index"
executable: "target/executable/salmon/salmon_index/salmon_index"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/salmon/salmon_index/salmon_index
View File

@@ -545,9 +545,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar
LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_index"
LABEL org.opencontainers.image.created="2024-08-20T21:05:39Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:04Z"
LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/salmon/salmon_quant/.config.vsh.yaml
View File

@@ -1173,7 +1173,7 @@ build_info:
output: "target/executable/salmon/salmon_quant"
executable: "target/executable/salmon/salmon_quant/salmon_quant"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/salmon/salmon_quant/salmon_quant
View File

@@ -1167,9 +1167,9 @@ RUN salmon index -v 2>&1 | sed 's/salmon \([0-9.]*\)/salmon: \1/' > /var/softwar
LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
LABEL org.opencontainers.image.description="Companion container for running component salmon salmon_quant"
LABEL org.opencontainers.image.created="2024-08-20T21:05:40Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:04Z"
LABEL org.opencontainers.image.source="https://github.com/COMBINE-lab/salmon"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_collate/.config.vsh.yaml
View File

@@ -264,7 +264,7 @@ build_info:
output: "target/executable/samtools/samtools_collate"
executable: "target/executable/samtools/samtools_collate/samtools_collate"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_collate/samtools_collate
View File

@@ -518,9 +518,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_collate"
LABEL org.opencontainers.image.created="2024-08-20T21:05:30Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:55Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_faidx/.config.vsh.yaml
View File

@@ -243,7 +243,7 @@ build_info:
output: "target/executable/samtools/samtools_faidx"
executable: "target/executable/samtools/samtools_faidx/samtools_faidx"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_faidx/samtools_faidx
View File

@@ -511,9 +511,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_faidx"
LABEL org.opencontainers.image.created="2024-08-20T21:05:30Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:54Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_fasta/.config.vsh.yaml
View File

@@ -433,7 +433,7 @@ build_info:
output: "target/executable/samtools/samtools_fasta"
executable: "target/executable/samtools/samtools_fasta/samtools_fasta"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_fasta/samtools_fasta
View File

@@ -624,9 +624,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fasta"
LABEL org.opencontainers.image.created="2024-08-20T21:05:31Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:55Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_fastq/.config.vsh.yaml
View File

@@ -433,7 +433,7 @@ build_info:
output: "target/executable/samtools/samtools_fastq"
executable: "target/executable/samtools/samtools_fastq/samtools_fastq"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_fastq/samtools_fastq
View File

@@ -625,9 +625,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_fastq"
LABEL org.opencontainers.image.created="2024-08-20T21:05:29Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:54Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_flagstat/.config.vsh.yaml
View File

@@ -173,7 +173,7 @@ build_info:
output: "target/executable/samtools/samtools_flagstat"
executable: "target/executable/samtools/samtools_flagstat/samtools_flagstat"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_flagstat/samtools_flagstat
View File

@@ -473,9 +473,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_flagstat"
LABEL org.opencontainers.image.created="2024-08-20T21:05:29Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:54Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_idxstats/.config.vsh.yaml
View File

@@ -183,7 +183,7 @@ build_info:
output: "target/executable/samtools/samtools_idxstats"
executable: "target/executable/samtools/samtools_idxstats/samtools_idxstats"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_idxstats/samtools_idxstats
View File

@@ -477,9 +477,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_idxstats"
LABEL org.opencontainers.image.created="2024-08-20T21:05:28Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:53Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_index/.config.vsh.yaml
View File

@@ -189,7 +189,7 @@ build_info:
output: "target/executable/samtools/samtools_index"
executable: "target/executable/samtools/samtools_index/samtools_index"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_index/samtools_index
View File

@@ -484,9 +484,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_index"
LABEL org.opencontainers.image.created="2024-08-20T21:05:28Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:53Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_sort/.config.vsh.yaml
View File

@@ -332,7 +332,7 @@ build_info:
output: "target/executable/samtools/samtools_sort"
executable: "target/executable/samtools/samtools_sort/samtools_sort"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_sort/samtools_sort
View File

@@ -555,9 +555,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_sort"
LABEL org.opencontainers.image.created="2024-08-20T21:05:31Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:55Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_stats/.config.vsh.yaml
View File

@@ -401,7 +401,7 @@ build_info:
output: "target/executable/samtools/samtools_stats"
executable: "target/executable/samtools/samtools_stats/samtools_stats"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_stats/samtools_stats
View File

@@ -574,9 +574,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_stats"
LABEL org.opencontainers.image.created="2024-08-20T21:05:31Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:56Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/samtools/samtools_view/.config.vsh.yaml
View File

@@ -665,7 +665,7 @@ build_info:
output: "target/executable/samtools/samtools_view"
executable: "target/executable/samtools/samtools_view/samtools_view"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/samtools/samtools_view/samtools_view
View File

@@ -824,9 +824,9 @@ sed 's#Using ##;s# \([0-9\.]*\)$#: \1#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component samtools samtools_view"
LABEL org.opencontainers.image.created="2024-08-20T21:05:29Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:53Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/samtools"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/seqtk/seqtk_sample/.config.vsh.yaml
View File

@@ -173,7 +173,7 @@ build_info:
output: "target/executable/seqtk/seqtk_sample"
executable: "target/executable/seqtk/seqtk_sample/seqtk_sample"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/seqtk/seqtk_sample/seqtk_sample
View File

@@ -480,9 +480,9 @@ FROM quay.io/biocontainers/seqtk:1.4--he4a0461_2
ENTRYPOINT []
LABEL org.opencontainers.image.authors="Jakub Majercik"
LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_sample"
LABEL org.opencontainers.image.created="2024-08-20T21:05:43Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:07Z"
LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/seqtk/seqtk_subseq/.config.vsh.yaml
View File

@@ -196,7 +196,7 @@ build_info:
output: "target/executable/seqtk/seqtk_subseq"
executable: "target/executable/seqtk/seqtk_subseq/seqtk_subseq"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/seqtk/seqtk_subseq/seqtk_subseq
View File

@@ -490,9 +490,9 @@ RUN echo $(echo $(seqtk 2>&1) | sed -n 's/.*\(Version: [^ ]*\).*/\1/p') > /var/s
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component seqtk seqtk_subseq"
LABEL org.opencontainers.image.created="2024-08-20T21:05:42Z"
LABEL org.opencontainers.image.created="2024-08-20T21:05:07Z"
LABEL org.opencontainers.image.source="https://github.com/lh3/seqtk/tree/v1.4"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/star/star_align_reads/.config.vsh.yaml
View File

@@ -2663,7 +2663,7 @@ build_info:
output: "target/executable/star/star_align_reads"
executable: "target/executable/star/star_align_reads/star_align_reads"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/star/star_align_reads/star_align_reads
View File

@@ -1919,9 +1919,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt"
LABEL org.opencontainers.image.description="Companion container for running component star star_align_reads"
LABEL org.opencontainers.image.created="2024-08-20T21:05:34Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:59Z"
LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/star/star_genome_generate/.config.vsh.yaml
View File

@@ -333,7 +333,7 @@ build_info:
output: "target/executable/star/star_genome_generate"
executable: "target/executable/star/star_genome_generate/star_genome_generate"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/star/star_genome_generate/star_genome_generate
View File

@@ -576,9 +576,9 @@ RUN STAR --version | sed 's#\(.*\)#star: "\1"#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
LABEL org.opencontainers.image.description="Companion container for running component star star_genome_generate"
LABEL org.opencontainers.image.created="2024-08-20T21:05:34Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:59Z"
LABEL org.opencontainers.image.source="https://github.com/alexdobin/STAR"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/umi_tools/umi_tools_dedup/.config.vsh.yaml
View File

@@ -611,7 +611,7 @@ build_info:
output: "target/executable/umi_tools/umi_tools_dedup"
executable: "target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/umi_tools/umi_tools_dedup/umi_tools_dedup
View File

@@ -769,9 +769,9 @@ RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_dedup"
LABEL org.opencontainers.image.created="2024-08-20T21:05:32Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:57Z"
LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/executable/umi_tools/umi_tools_extract/.config.vsh.yaml
View File

@@ -449,7 +449,7 @@ build_info:
output: "target/executable/umi_tools/umi_tools_extract"
executable: "target/executable/umi_tools/umi_tools_extract/umi_tools_extract"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

4
target/executable/umi_tools/umi_tools_extract/umi_tools_extract
View File

@@ -636,9 +636,9 @@ ENTRYPOINT []
RUN umi_tools -v | sed 's/ version//g' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component umi_tools umi_tools_extract"
LABEL org.opencontainers.image.created="2024-08-20T21:05:32Z"
LABEL org.opencontainers.image.created="2024-08-20T21:04:57Z"
LABEL org.opencontainers.image.source="https://github.com/CGATOxford/UMI-tools"
LABEL org.opencontainers.image.revision="1bbebbb5cb1e1abdefa478488aaa240909e54316"
LABEL org.opencontainers.image.revision="d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
LABEL org.opencontainers.image.version="qualimap"
VIASHDOCKER

2
target/nextflow/agat/agat_convert_bed2gff/.config.vsh.yaml
View File

@@ -235,7 +235,7 @@ build_info:
output: "target/nextflow/agat/agat_convert_bed2gff"
executable: "target/nextflow/agat/agat_convert_bed2gff/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/agat/agat_convert_bed2gff/main.nf
View File

@@ -3066,7 +3066,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/agat/agat_convert_bed2gff",
"viash_version" : "0.9.0-RC6",
"git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
"git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/agat/agat_convert_embl2gff/.config.vsh.yaml
View File

@@ -225,7 +225,7 @@ build_info:
output: "target/nextflow/agat/agat_convert_embl2gff"
executable: "target/nextflow/agat/agat_convert_embl2gff/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/agat/agat_convert_embl2gff/main.nf
View File

@@ -3059,7 +3059,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/agat/agat_convert_embl2gff",
"viash_version" : "0.9.0-RC6",
"git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
"git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
View File

@@ -228,7 +228,7 @@ build_info:
output: "target/nextflow/agat/agat_convert_sp_gff2gtf"
executable: "target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/agat/agat_convert_sp_gff2gtf/main.nf
View File

@@ -3042,7 +3042,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/agat/agat_convert_sp_gff2gtf",
"viash_version" : "0.9.0-RC6",
"git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
"git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
View File

@@ -188,7 +188,7 @@ build_info:
output: "target/nextflow/agat/agat_convert_sp_gff2tsv"
executable: "target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/agat/agat_convert_sp_gff2tsv/main.nf
View File

@@ -3020,7 +3020,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/agat/agat_convert_sp_gff2tsv",
"viash_version" : "0.9.0-RC6",
"git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
"git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
View File

@@ -195,7 +195,7 @@ build_info:
output: "target/nextflow/agat/agat_convert_sp_gxf2gxf"
executable: "target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

2
target/nextflow/agat/agat_convert_sp_gxf2gxf/main.nf
View File

@@ -3020,7 +3020,7 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/agat/agat_convert_sp_gxf2gxf",
"viash_version" : "0.9.0-RC6",
"git_commit" : "1bbebbb5cb1e1abdefa478488aaa240909e54316",
"git_commit" : "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e",
"git_remote" : "https://github.com/viash-hub/biobox"
},
"package_config" : {

2
target/nextflow/arriba/.config.vsh.yaml
View File

@@ -706,7 +706,7 @@ build_info:
output: "target/nextflow/arriba"
executable: "target/nextflow/arriba/main.nf"
viash_version: "0.9.0-RC6"
git_commit: "1bbebbb5cb1e1abdefa478488aaa240909e54316"
git_commit: "d476dee6bdcf7ee5444385acbfa0d1d3ae06557e"
git_remote: "https://github.com/viash-hub/biobox"
package_config:
name: "biobox"

Some files were not shown because too many files have changed in this diff Show More