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Build branch add_sgdemux with version add_sgdemux (402ad6a)

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Build pipeline: viash-hub.biobox.add-sgdemux-kkwml

Source commit: 402ad6a813

Source message: Add threading options
This commit is contained in:
CI
2024-11-14 13:10:57 +00:00
parent da510fdac8
commit 84bbb31aef
322 changed files with 948 additions and 881 deletions
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22
src/sgdemux/script.sh
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@@ -38,10 +38,32 @@ if [ "$par_most_unmatched_to_output" -eq "0" ] && [ ! -z "$par_most_frequent_unm
exit 1
fi
# The sgdemux documentation recommends the following settings:
# 1/3 of available threads for compression
# 1/6 of available threads for writing
# 1/6-1/3 of available threads for demultiplexing
declare -A thread_settings=(["compression_threads"]="3"
["writing_threads"]="6"
["demultiplexing_threads"]="3"
)
if [ ! -z "$meta_cpus" ]; then
for setting_var in "${!thread_settings[@]}"; do
denominator=${thread_settings[$setting_var]}
result=$(( $meta_cpus / $denominator ))
if (( $result == 0 )); then
result=1
fi
declare $setting_var=$result
done
fi
args=(
--fastqs ${fastqs[@]}
--sample-metadata "$par_sample_metadata"
--output-dir "$TMPDIR"
${demultiplexing_threads:+--demux-threads $demultiplexing_threads}
${writing_threads:+--writer-threads $writing_threads}
${compression_threads:+--compressor-threads $compression_threads}
${par_allowed_mismatches:+--allowed-mismatches $par_allowed_mismatches}
${par_min_delta:+--min-delta $par_min_delta}
${par_free_ns:+--free-ns $par_free_ns}

3
src/sgdemux/test.sh
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@@ -34,7 +34,8 @@ mkdir "$sample_dir_test_1"
--most_frequent_unmatched "$output_test1/most_frequent_unmatched.tsv" \
--sample_barcode_hop_metrics "$output_test1/sample_barcode_hop_metrics.tsv" \
--per_sample_metrics "$output_test1/per_sample_metrics.tsv" \
--per_project_metrics "$output_test1/per_project_metrics.tsv"
--per_project_metrics "$output_test1/per_project_metrics.tsv" \
---cpus 1
# Check for correct number of output FASTQ files
readarray -d '' output_fastq < <(find "$sample_dir_test_1" -name "*.fastq.gz" -print0)

6
target/executable/agat/agat_convert_bed2gff/.config.vsh.yaml
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@@ -235,9 +235,9 @@ build_info:
output: "target/executable/agat/agat_convert_bed2gff"
executable: "target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/agat/agat_convert_bed2gff/agat_convert_bed2gff
View File

@@ -515,9 +515,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_bed2gff"
LABEL org.opencontainers.image.created="2024-11-13T14:00:22Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:36Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/agat/agat_convert_embl2gff/.config.vsh.yaml
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@@ -225,9 +225,9 @@ build_info:
output: "target/executable/agat/agat_convert_embl2gff"
executable: "target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/agat/agat_convert_embl2gff/agat_convert_embl2gff
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@@ -505,9 +505,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_embl2gff"
LABEL org.opencontainers.image.created="2024-11-13T14:00:24Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:38Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/agat/agat_convert_genscan2gff/.config.vsh.yaml
View File

@@ -230,9 +230,9 @@ build_info:
output: "target/executable/agat/agat_convert_genscan2gff"
executable: "target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/agat/agat_convert_genscan2gff/agat_convert_genscan2gff
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@@ -514,9 +514,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_genscan2gff"
LABEL org.opencontainers.image.created="2024-11-13T14:00:25Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:38Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/agat/agat_convert_mfannot2gff/.config.vsh.yaml
View File

@@ -186,9 +186,9 @@ build_info:
output: "target/executable/agat/agat_convert_mfannot2gff"
executable: "target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/agat/agat_convert_mfannot2gff/agat_convert_mfannot2gff
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@@ -480,9 +480,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_mfannot2gff"
LABEL org.opencontainers.image.created="2024-11-13T14:00:36Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:49Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/agat/agat_convert_sp_gff2gtf/.config.vsh.yaml
View File

@@ -228,9 +228,9 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gff2gtf"
executable: "target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/agat/agat_convert_sp_gff2gtf/agat_convert_sp_gff2gtf
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@@ -519,9 +519,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2gtf"
LABEL org.opencontainers.image.created="2024-11-13T14:00:23Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:36Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/agat/agat_convert_sp_gff2tsv/.config.vsh.yaml
View File

@@ -188,9 +188,9 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gff2tsv"
executable: "target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/agat/agat_convert_sp_gff2tsv/agat_convert_sp_gff2tsv
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@@ -484,9 +484,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gff2tsv"
LABEL org.opencontainers.image.created="2024-11-13T14:00:23Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:37Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/agat/agat_convert_sp_gxf2gxf/.config.vsh.yaml
View File

@@ -195,9 +195,9 @@ build_info:
output: "target/executable/agat/agat_convert_sp_gxf2gxf"
executable: "target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/agat/agat_convert_sp_gxf2gxf/agat_convert_sp_gxf2gxf
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@@ -493,9 +493,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_convert_sp_gxf2gxf"
LABEL org.opencontainers.image.created="2024-11-13T14:00:22Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:35Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/agat/agat_sp_add_introns/.config.vsh.yaml
View File

@@ -186,9 +186,9 @@ build_info:
output: "target/executable/agat/agat_sp_add_introns"
executable: "target/executable/agat/agat_sp_add_introns/agat_sp_add_introns"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/agat/agat_sp_add_introns/agat_sp_add_introns
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@@ -479,9 +479,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_add_introns"
LABEL org.opencontainers.image.created="2024-11-13T14:00:23Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:37Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/agat/agat_sp_filter_feature_from_kill_list/.config.vsh.yaml
View File

@@ -236,9 +236,9 @@ build_info:
output: "target/executable/agat/agat_sp_filter_feature_from_kill_list"
executable: "target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/agat/agat_sp_filter_feature_from_kill_list/agat_sp_filter_feature_from_kill_list
View File

@@ -517,9 +517,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_filter_feature_from_kill_list"
LABEL org.opencontainers.image.created="2024-11-13T14:00:25Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:38Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/agat/agat_sp_merge_annotations/.config.vsh.yaml
View File

@@ -184,9 +184,9 @@ build_info:
output: "target/executable/agat/agat_sp_merge_annotations"
executable: "target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/agat/agat_sp_merge_annotations/agat_sp_merge_annotations
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@@ -482,9 +482,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_merge_annotations"
LABEL org.opencontainers.image.created="2024-11-13T14:00:24Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:37Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/agat/agat_sp_statistics/.config.vsh.yaml
View File

@@ -231,9 +231,9 @@ build_info:
output: "target/executable/agat/agat_sp_statistics"
executable: "target/executable/agat/agat_sp_statistics/agat_sp_statistics"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/agat/agat_sp_statistics/agat_sp_statistics
View File

@@ -507,9 +507,9 @@ RUN agat --version | sed 's/.*v\.//; s/\s.*//' | sed 's/^/AGAT: /' > /var/softwa
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_sp_statistics"
LABEL org.opencontainers.image.created="2024-11-13T14:00:24Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:37Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/agat/agat_sq_stat_basic/.config.vsh.yaml
View File

@@ -227,9 +227,9 @@ build_info:
output: "target/executable/agat/agat_sq_stat_basic"
executable: "target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/agat/agat_sq_stat_basic/agat_sq_stat_basic
View File

@@ -507,9 +507,9 @@ RUN agat --version | sed 's/AGAT\s\(.*\)/agat: "\1"/' > /var/software_versions.t
LABEL org.opencontainers.image.authors="Leïla Paquay"
LABEL org.opencontainers.image.description="Companion container for running component agat agat_sq_stat_basic"
LABEL org.opencontainers.image.created="2024-11-13T14:00:36Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:49Z"
LABEL org.opencontainers.image.source="https://github.com/NBISweden/AGAT"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/arriba/.config.vsh.yaml
View File

@@ -706,9 +706,9 @@ build_info:
output: "target/executable/arriba"
executable: "target/executable/arriba/arriba"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/arriba/arriba
View File

@@ -754,9 +754,9 @@ RUN arriba -h | grep 'Version:' 2>&1 | sed 's/Version:\s\(.*\)/arriba: "\1"/' >
LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
LABEL org.opencontainers.image.description="Companion container for running component arriba"
LABEL org.opencontainers.image.created="2024-11-13T14:00:26Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:39Z"
LABEL org.opencontainers.image.source="https://github.com/suhrig/arriba"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bbmap/bbmap_bbsplit/.config.vsh.yaml
View File

@@ -368,9 +368,9 @@ build_info:
output: "target/executable/bbmap/bbmap_bbsplit"
executable: "target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bbmap/bbmap_bbsplit/bbmap_bbsplit
View File

@@ -600,9 +600,9 @@ cp -r bbmap/* /usr/local/bin
RUN bbsplit.sh --version 2>&1 | awk '/BBMap version/{print "BBMAP:", $NF}' > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component bbmap bbmap_bbsplit"
LABEL org.opencontainers.image.created="2024-11-13T14:00:25Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:39Z"
LABEL org.opencontainers.image.source="https://github.com/BioInfoTools/BBMap/blob/master/sh/bbsplit.sh"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bcftools/bcftools_annotate/.config.vsh.yaml
View File

@@ -469,9 +469,9 @@ build_info:
output: "target/executable/bcftools/bcftools_annotate"
executable: "target/executable/bcftools/bcftools_annotate/bcftools_annotate"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bcftools/bcftools_annotate/bcftools_annotate
View File

@@ -650,9 +650,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_annotate"
LABEL org.opencontainers.image.created="2024-11-13T14:00:34Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:48Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bcftools/bcftools_concat/.config.vsh.yaml
View File

@@ -335,9 +335,9 @@ build_info:
output: "target/executable/bcftools/bcftools_concat"
executable: "target/executable/bcftools/bcftools_concat/bcftools_concat"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bcftools/bcftools_concat/bcftools_concat
View File

@@ -566,9 +566,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_concat"
LABEL org.opencontainers.image.created="2024-11-13T14:00:33Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:47Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bcftools/bcftools_norm/.config.vsh.yaml
View File

@@ -416,9 +416,9 @@ build_info:
output: "target/executable/bcftools/bcftools_norm"
executable: "target/executable/bcftools/bcftools_norm/bcftools_norm"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bcftools/bcftools_norm/bcftools_norm
View File

@@ -589,9 +589,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_norm"
LABEL org.opencontainers.image.created="2024-11-13T14:00:34Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:47Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bcftools/bcftools_sort/.config.vsh.yaml
View File

@@ -185,9 +185,9 @@ build_info:
output: "target/executable/bcftools/bcftools_sort"
executable: "target/executable/bcftools/bcftools_sort/bcftools_sort"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bcftools/bcftools_sort/bcftools_sort
View File

@@ -483,9 +483,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_sort"
LABEL org.opencontainers.image.created="2024-11-13T14:00:33Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:46Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bcftools/bcftools_stats/.config.vsh.yaml
View File

@@ -458,9 +458,9 @@ build_info:
output: "target/executable/bcftools/bcftools_stats"
executable: "target/executable/bcftools/bcftools_stats/bcftools_stats"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bcftools/bcftools_stats/bcftools_stats
View File

@@ -626,9 +626,9 @@ RUN echo "bcftools: \"$(bcftools --version | grep 'bcftools' | sed -n 's/^bcftoo
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bcftools bcftools_stats"
LABEL org.opencontainers.image.created="2024-11-13T14:00:33Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:47Z"
LABEL org.opencontainers.image.source="https://github.com/samtools/bcftools"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bcl_convert/.config.vsh.yaml
View File

@@ -418,9 +418,9 @@ build_info:
output: "target/executable/bcl_convert"
executable: "target/executable/bcl_convert/bcl_convert"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bcl_convert/bcl_convert
View File

@@ -599,9 +599,9 @@ RUN echo "bcl-convert: \"$(bcl-convert -V 2>&1 >/dev/null | sed -n '/Version/ s/
LABEL org.opencontainers.image.authors="Toni Verbeiren, Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component bcl_convert"
LABEL org.opencontainers.image.created="2024-11-13T14:00:32Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:45Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bd_rhapsody/bd_rhapsody_make_reference/.config.vsh.yaml
View File

@@ -274,9 +274,9 @@ build_info:
output: "target/executable/bd_rhapsody/bd_rhapsody_make_reference"
executable: "target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bd_rhapsody/bd_rhapsody_make_reference/bd_rhapsody_make_reference
View File

@@ -554,9 +554,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1)
RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_make_reference"
LABEL org.opencontainers.image.created="2024-11-13T14:00:35Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:49Z"
LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1/Extra_Utilities/"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/.config.vsh.yaml
View File

@@ -1115,9 +1115,9 @@ build_info:
output: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis"
executable: "target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bd_rhapsody/bd_rhapsody_sequence_analysis/bd_rhapsody_sequence_analysis
View File

@@ -954,9 +954,9 @@ RUN VERSION=$(ls -v /var/bd_rhapsody_cwl | grep '^v' | sed 's#v##' | tail -1)
RUN echo "bdgenomics/rhapsody: \"$VERSION\"" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
LABEL org.opencontainers.image.description="Companion container for running component bd_rhapsody bd_rhapsody_sequence_analysis"
LABEL org.opencontainers.image.created="2024-11-13T14:00:35Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:48Z"
LABEL org.opencontainers.image.source="https://bitbucket.org/CRSwDev/cwl/src/master/v2.2.1"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bedtools/bedtools_bamtobed/.config.vsh.yaml
View File

@@ -235,9 +235,9 @@ build_info:
output: "target/executable/bedtools/bedtools_bamtobed"
executable: "target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bedtools/bedtools_bamtobed/bedtools_bamtobed
View File

@@ -522,9 +522,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtobed"
LABEL org.opencontainers.image.created="2024-11-13T14:00:32Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:46Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
View File

@@ -187,9 +187,9 @@ build_info:
output: "target/executable/bedtools/bedtools_bamtofastq"
executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
View File

@@ -483,9 +483,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq"
LABEL org.opencontainers.image.created="2024-11-13T14:00:33Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:47Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
View File

@@ -176,9 +176,9 @@ build_info:
output: "target/executable/bedtools/bedtools_bed12tobed6"
executable: "target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6
View File

@@ -480,9 +480,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bed12tobed6"
LABEL org.opencontainers.image.created="2024-11-13T14:00:34Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:48Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
View File

@@ -214,9 +214,9 @@ build_info:
output: "target/executable/bedtools/bedtools_bedtobam"
executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
View File

@@ -496,9 +496,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam"
LABEL org.opencontainers.image.created="2024-11-13T14:00:35Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:48Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml
View File

@@ -337,9 +337,9 @@ build_info:
output: "target/executable/bedtools/bedtools_genomecov"
executable: "target/executable/bedtools/bedtools_genomecov/bedtools_genomecov"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bedtools/bedtools_genomecov/bedtools_genomecov
View File

@@ -591,9 +591,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_genomecov"
LABEL org.opencontainers.image.created="2024-11-13T14:00:35Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:48Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
View File

@@ -232,9 +232,9 @@ build_info:
output: "target/executable/bedtools/bedtools_getfasta"
executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
View File

@@ -526,9 +526,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta"
LABEL org.opencontainers.image.created="2024-11-13T14:00:33Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:46Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bedtools/bedtools_groupby/.config.vsh.yaml
View File

@@ -273,9 +273,9 @@ build_info:
output: "target/executable/bedtools/bedtools_groupby"
executable: "target/executable/bedtools/bedtools_groupby/bedtools_groupby"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bedtools/bedtools_groupby/bedtools_groupby
View File

@@ -552,9 +552,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_groupby"
LABEL org.opencontainers.image.created="2024-11-13T14:00:32Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:46Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
View File

@@ -410,9 +410,9 @@ build_info:
output: "target/executable/bedtools/bedtools_intersect"
executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bedtools/bedtools_intersect/bedtools_intersect
View File

@@ -633,9 +633,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect"
LABEL org.opencontainers.image.created="2024-11-13T14:00:34Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:47Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bedtools/bedtools_links/.config.vsh.yaml
View File

@@ -210,9 +210,9 @@ build_info:
output: "target/executable/bedtools/bedtools_links"
executable: "target/executable/bedtools/bedtools_links/bedtools_links"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bedtools/bedtools_links/bedtools_links
View File

@@ -500,9 +500,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_links"
LABEL org.opencontainers.image.created="2024-11-13T14:00:34Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:48Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bedtools/bedtools_merge/.config.vsh.yaml
View File

@@ -279,9 +279,9 @@ build_info:
output: "target/executable/bedtools/bedtools_merge"
executable: "target/executable/bedtools/bedtools_merge/bedtools_merge"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bedtools/bedtools_merge/bedtools_merge
View File

@@ -558,9 +558,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_merge"
LABEL org.opencontainers.image.created="2024-11-13T14:00:35Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:49Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/bedtools/bedtools_sort/.config.vsh.yaml
View File

@@ -222,9 +222,9 @@ build_info:
output: "target/executable/bedtools/bedtools_sort"
executable: "target/executable/bedtools/bedtools_sort/bedtools_sort"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/bedtools/bedtools_sort/bedtools_sort
View File

@@ -509,9 +509,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort"
LABEL org.opencontainers.image.created="2024-11-13T14:00:33Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:47Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/busco/busco_download_datasets/.config.vsh.yaml
View File

@@ -158,9 +158,9 @@ build_info:
output: "target/executable/busco/busco_download_datasets"
executable: "target/executable/busco/busco_download_datasets/busco_download_datasets"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/busco/busco_download_datasets/busco_download_datasets
View File

@@ -475,9 +475,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component busco busco_download_datasets"
LABEL org.opencontainers.image.created="2024-11-13T14:00:31Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:45Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/busco/busco_list_datasets/.config.vsh.yaml
View File

@@ -145,9 +145,9 @@ build_info:
output: "target/executable/busco/busco_list_datasets"
executable: "target/executable/busco/busco_list_datasets/busco_list_datasets"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/busco/busco_list_datasets/busco_list_datasets
View File

@@ -465,9 +465,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component busco busco_list_datasets"
LABEL org.opencontainers.image.created="2024-11-13T14:00:31Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:44Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/busco/busco_run/.config.vsh.yaml
View File

@@ -423,9 +423,9 @@ build_info:
output: "target/executable/busco/busco_run"
executable: "target/executable/busco/busco_run/busco_run"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/busco/busco_run/busco_run
View File

@@ -632,9 +632,9 @@ RUN busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_version
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component busco busco_run"
LABEL org.opencontainers.image.created="2024-11-13T14:00:31Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:45Z"
LABEL org.opencontainers.image.source="https://gitlab.com/ezlab/busco"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/cellranger/cellranger_mkref/.config.vsh.yaml
View File

@@ -195,9 +195,9 @@ build_info:
output: "target/executable/cellranger/cellranger_mkref"
executable: "target/executable/cellranger/cellranger_mkref/cellranger_mkref"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/cellranger/cellranger_mkref/cellranger_mkref
View File

@@ -481,9 +481,9 @@ RUN apt-get update && \
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component cellranger cellranger_mkref"
LABEL org.opencontainers.image.created="2024-11-13T14:00:32Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:45Z"
LABEL org.opencontainers.image.source="https://github.com/10XGenomics/cellranger/blob/main/lib/python/cellranger/reference_builder.py"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/cutadapt/.config.vsh.yaml
View File

@@ -740,9 +740,9 @@ build_info:
output: "target/executable/cutadapt"
executable: "target/executable/cutadapt/cutadapt"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/cutadapt/cutadapt
View File

@@ -831,9 +831,9 @@ RUN cutadapt --version | sed 's/\(.*\)/cutadapt: "\1"/' > /var/software_versions
LABEL org.opencontainers.image.authors="Toni Verbeiren"
LABEL org.opencontainers.image.description="Companion container for running component cutadapt"
LABEL org.opencontainers.image.created="2024-11-13T14:00:27Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:40Z"
LABEL org.opencontainers.image.source="https://github.com/marcelm/cutadapt"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/falco/.config.vsh.yaml
View File

@@ -317,9 +317,9 @@ build_info:
output: "target/executable/falco"
executable: "target/executable/falco/falco"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/falco/falco
View File

@@ -589,9 +589,9 @@ RUN echo "falco: \"$(falco -v | sed -n 's/^falco //p')\"" > /var/software_versio
LABEL org.opencontainers.image.authors="Toni Verbeiren"
LABEL org.opencontainers.image.description="Companion container for running component falco"
LABEL org.opencontainers.image.created="2024-11-13T14:00:24Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:37Z"
LABEL org.opencontainers.image.source="https://github.com/smithlabcode/falco"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/fastp/.config.vsh.yaml
View File

@@ -1083,9 +1083,9 @@ build_info:
output: "target/executable/fastp"
executable: "target/executable/fastp/fastp"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/fastp/fastp
View File

@@ -1028,9 +1028,9 @@ RUN fastp --version 2>&1 | sed 's# #: "#;s#$#"#' > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
LABEL org.opencontainers.image.description="Companion container for running component fastp"
LABEL org.opencontainers.image.created="2024-11-13T14:00:35Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:49Z"
LABEL org.opencontainers.image.source="https://github.com/OpenGene/fastp"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/fastqc/.config.vsh.yaml
View File

@@ -340,9 +340,9 @@ build_info:
output: "target/executable/fastqc"
executable: "target/executable/fastqc/fastqc"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/fastqc/fastqc
View File

@@ -601,9 +601,9 @@ RUN echo "fastqc: $(fastqc --version | sed -n 's/^FastQC //p')" > /var/software_
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component fastqc"
LABEL org.opencontainers.image.created="2024-11-13T14:00:37Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:50Z"
LABEL org.opencontainers.image.source="https://github.com/s-andrews/FastQC"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/featurecounts/.config.vsh.yaml
View File

@@ -645,9 +645,9 @@ build_info:
output: "target/executable/featurecounts"
executable: "target/executable/featurecounts/featurecounts"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/featurecounts/featurecounts
View File

@@ -754,9 +754,9 @@ RUN featureCounts -v 2>&1 | sed 's/featureCounts v\([0-9.]*\)/featureCounts: \1/
LABEL org.opencontainers.image.authors="Sai Nirmayi Yasa"
LABEL org.opencontainers.image.description="Companion container for running component featurecounts"
LABEL org.opencontainers.image.created="2024-11-13T14:00:22Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:35Z"
LABEL org.opencontainers.image.source="https://github.com/ShiLab-Bioinformatics/subread"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/fq_subsample/.config.vsh.yaml
View File

@@ -190,9 +190,9 @@ build_info:
output: "target/executable/fq_subsample"
executable: "target/executable/fq_subsample/fq_subsample"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/fq_subsample/fq_subsample
View File

@@ -493,9 +493,9 @@ mv target/release/fq /usr/local/bin/ && \
cd / && rm -rf /fq
LABEL org.opencontainers.image.description="Companion container for running component fq_subsample"
LABEL org.opencontainers.image.created="2024-11-13T14:00:30Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:43Z"
LABEL org.opencontainers.image.source="https://github.com/stjude-rust-labs/fq"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/gffread/.config.vsh.yaml
View File

@@ -685,9 +685,9 @@ build_info:
output: "target/executable/gffread"
executable: "target/executable/gffread/gffread"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/gffread/gffread
View File

@@ -807,9 +807,9 @@ RUN echo "gffread: \"$(gffread --version 2>&1)\"" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Emma Rousseau"
LABEL org.opencontainers.image.description="Companion container for running component gffread"
LABEL org.opencontainers.image.created="2024-11-13T14:00:25Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:38Z"
LABEL org.opencontainers.image.source="https://github.com/gpertea/gffread"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/kallisto/kallisto_index/.config.vsh.yaml
View File

@@ -218,9 +218,9 @@ build_info:
output: "target/executable/kallisto/kallisto_index"
executable: "target/executable/kallisto/kallisto_index/kallisto_index"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/kallisto/kallisto_index/kallisto_index
View File

@@ -506,9 +506,9 @@ tar -xzf kallisto_linux-v0.50.1.tar.gz && \
mv kallisto/kallisto /usr/local/bin/
LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_index"
LABEL org.opencontainers.image.created="2024-11-13T14:00:24Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:38Z"
LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/kallisto/kallisto_quant/.config.vsh.yaml
View File

@@ -246,9 +246,9 @@ build_info:
output: "target/executable/kallisto/kallisto_quant"
executable: "target/executable/kallisto/kallisto_quant/kallisto_quant"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/kallisto/kallisto_quant/kallisto_quant
View File

@@ -522,9 +522,9 @@ mv kallisto/kallisto /usr/local/bin/
RUN echo "kallisto: $(kallisto version | sed 's/kallisto, version //')" > /var/software_versions.txt
LABEL org.opencontainers.image.description="Companion container for running component kallisto kallisto_quant"
LABEL org.opencontainers.image.created="2024-11-13T14:00:25Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:38Z"
LABEL org.opencontainers.image.source="https://github.com/pachterlab/kallisto"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/lofreq/lofreq_call/.config.vsh.yaml
View File

@@ -507,9 +507,9 @@ build_info:
output: "target/executable/lofreq/lofreq_call"
executable: "target/executable/lofreq/lofreq_call/lofreq_call"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/lofreq/lofreq_call/lofreq_call
View File

@@ -656,9 +656,9 @@ echo "lofreq: $version" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Kai Waldrant"
LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_call"
LABEL org.opencontainers.image.created="2024-11-13T14:00:36Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:49Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/lofreq/lofreq_indelqual/.config.vsh.yaml
View File

@@ -215,9 +215,9 @@ build_info:
output: "target/executable/lofreq/lofreq_indelqual"
executable: "target/executable/lofreq/lofreq_indelqual/lofreq_indelqual"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/lofreq/lofreq_indelqual/lofreq_indelqual
View File

@@ -501,9 +501,9 @@ echo "lofreq: $version" > /var/software_versions.txt
LABEL org.opencontainers.image.authors="Kai Waldrant"
LABEL org.opencontainers.image.description="Companion container for running component lofreq lofreq_indelqual"
LABEL org.opencontainers.image.created="2024-11-13T14:00:36Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:50Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

6
target/executable/multiqc/.config.vsh.yaml
View File

@@ -456,9 +456,9 @@ build_info:
output: "target/executable/multiqc"
executable: "target/executable/multiqc/multiqc"
viash_version: "0.9.0"
git_commit: "dd75d6f397b5865acc31c39e7b613f8fb2989757"
git_remote: "https://x-access-token:ghs_aGYAxYt7yWgGi0TQrVTQTRSexafqfc47Ff1S@github.com/viash-hub/biobox"
git_tag: "v0.2.0-26-gdd75d6f"
git_commit: "402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
git_remote: "https://x-access-token:ghs_VWGBwCOTHxXRJ07uVE94xFn8UJ2FmS0FLhmc@github.com/viash-hub/biobox"
git_tag: "v0.2.0-27-g402ad6a"
package_config:
name: "biobox"
version: "add_sgdemux"

4
target/executable/multiqc/multiqc
View File

@@ -637,9 +637,9 @@ RUN multiqc --version | sed 's/multiqc, version\s\(.*\)/multiqc: "\1"/' > /var/s
LABEL org.opencontainers.image.authors="Dorien Roosen"
LABEL org.opencontainers.image.description="Companion container for running component multiqc"
LABEL org.opencontainers.image.created="2024-11-13T14:00:27Z"
LABEL org.opencontainers.image.created="2024-11-14T12:50:40Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/biobox"
LABEL org.opencontainers.image.revision="dd75d6f397b5865acc31c39e7b613f8fb2989757"
LABEL org.opencontainers.image.revision="402ad6a813c0d0b141bbf8f9a3aab9c270a74812"
LABEL org.opencontainers.image.version="add_sgdemux"
VIASHDOCKER

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