Build branch main with version main (aa43543)

Build pipeline: viash-hub.biobox.main-2k68h

Source commit: aa43543e1f

Source message: Rseqc innerdistance (#159)

* initial commit dedup

* Revert "initial commit dedup"

This reverts commit 38f586bec0ac9e4312b016e29c3aa0bd53f292b2.

* full component with two tests

* fix default values

* adjust argument names and container image

---------

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>

CHANGELOG.md

@@ -4,26 +4,30 @@
 
 * `agat`:
   - `agat/agat_convert_genscan2gff`: convert a genscan file into a GFF file (PR #100).
-  - `agat_sp_statistics`: provides exhaustive statistics of a gft/gff file (PR #107).
-
+  - `agat/agat_sp_add_introns`: add intron features to gtf/gff file without intron features (PR #104).
+  - `agat/agat_sp_filter_feature_from_kill_list`: remove features in a GFF file based on a kill list (PR #105).
+  - `agat/agat_sp_merge_annotations`: merge different gff annotation files in one (PR #106).
+  - `agat/agat_sp_statistics`: provides exhaustive statistics of a gft/gff file (PR #107).
 
 * `bd_rhapsody/bd_rhapsody_sequence_analysis`: BD Rhapsody Sequence Analysis CWL pipeline (PR #96).
 
+* `bedtools`:
+   - `bedtools/bedtools_bamtobed`: Converts BAM alignments to BED6 or BEDPE format (PR #109).
+
 * `rsem/rsem_calculate_expression`: Calculate expression levels (PR #93).
 
+* `rseqc`:
+  - `rseqc/rseqc_inner_distance`: Calculate inner distance between read pairs (PR #159).
+  - `rseqc/rseqc_inferexperiment`: Infer strandedness from sequencing reads (PR #158).
+  - `rseqc/bam_stat`: Generate statistics from a bam file (PR #155).
+
 * `nanoplot`: Plotting tool for long read sequencing data and alignments (PR #95).
 
-* `agat`:
-  - `agat/agat_sp_add_introns`: add intron features to gtf/gff file without intron features (PR #104).
-
-
-## BREAKING CHANGES
+## BUG FIXES
 
 * `falco`: Fix a typo in the `--reverse_complement` argument (PR #157).
 
-## BUG FIXES
-
-* `cutadapt`: fix the the non-functional `action` parameter (PR #161).
+* `cutadapt`: Fix the the non-functional `action` parameter (PR #161).
 
 ## MINOR CHANGES