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Build branch main with version main (38f635a)

Browse Source 
Build pipeline: viash-hub.biobox.main-dz9k8

Source commit: 38f635ad57

Source message: Add agat convert genscan2gff (#100)

* add config

* add help

* add test data and expected output adn the script to obtain them

* add running script

* add test script

* update changelog

* cleanup

* fix tests

* format description

* remove unused argument --inflate-off

* update --config description

* add requirements

* create temporary directory and clean up on exit

* add GENSCAN in keywords

* add set -e to test

* fix create temporary directory

* add set -eo pipefail to test

* add set -eo pipefail to script

* fix create temporary directory

* update --config description

* cleanup changelog

* cleanup changelog

* Update deprecated variable

---------

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
This commit is contained in:
CI
2024-09-17 07:19:20 +00:00
parent 4b61e09a56
commit f47054953e
255 changed files with 8531 additions and 1561 deletions
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9
target/executable/bedtools/bedtools_bamtofastq/.config.vsh.yaml
View File

@@ -186,15 +186,16 @@ build_info:
engine: "docker|native"
output: "target/executable/bedtools/bedtools_bamtofastq"
executable: "target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq"
viash_version: "0.9.0-RC7"
git_commit: "124d50ce5318b612e4a1e4da1be705523cd6eab7"
git_remote: "https://x-access-token:ghs_royCfknE2TdPwJPOM1bW31Qho8HPrM4SPutG@github.com/viash-hub/biobox"
viash_version: "0.9.0"
git_commit: "38f635ad57ef05550bba3a0864c81627f84f5ad2"
git_remote: "https://x-access-token:ghs_wFnCgH6LWyegjU3sAMvKhUKRQxXHxx2DXwds@github.com/viash-hub/biobox"
git_tag: "v0.2.0-2-g38f635a"
package_config:
name: "biobox"
version: "main"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0-RC7"
viash_version: "0.9.0"
source: "src"
target: "target"
config_mods:

10
target/executable/bedtools/bedtools_bamtofastq/bedtools_bamtofastq
View File

@@ -2,9 +2,9 @@
# bedtools_bamtofastq main
#
# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
# Data Intuitive.
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
# Intuitive.
#
# The component may contain files which fall under a different license. The
# authors of this component should specify the license in the header of such
@@ -483,9 +483,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bamtofastq"
LABEL org.opencontainers.image.created="2024-09-16T07:55:02Z"
LABEL org.opencontainers.image.created="2024-09-17T06:47:20Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="124d50ce5318b612e4a1e4da1be705523cd6eab7"
LABEL org.opencontainers.image.revision="38f635ad57ef05550bba3a0864c81627f84f5ad2"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

9
target/executable/bedtools/bedtools_bed12tobed6/.config.vsh.yaml
View File

@@ -175,15 +175,16 @@ build_info:
engine: "docker|native"
output: "target/executable/bedtools/bedtools_bed12tobed6"
executable: "target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6"
viash_version: "0.9.0-RC7"
git_commit: "124d50ce5318b612e4a1e4da1be705523cd6eab7"
git_remote: "https://x-access-token:ghs_royCfknE2TdPwJPOM1bW31Qho8HPrM4SPutG@github.com/viash-hub/biobox"
viash_version: "0.9.0"
git_commit: "38f635ad57ef05550bba3a0864c81627f84f5ad2"
git_remote: "https://x-access-token:ghs_wFnCgH6LWyegjU3sAMvKhUKRQxXHxx2DXwds@github.com/viash-hub/biobox"
git_tag: "v0.2.0-2-g38f635a"
package_config:
name: "biobox"
version: "main"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0-RC7"
viash_version: "0.9.0"
source: "src"
target: "target"
config_mods:

10
target/executable/bedtools/bedtools_bed12tobed6/bedtools_bed12tobed6
View File

@@ -2,9 +2,9 @@
# bedtools_bed12tobed6 main
#
# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
# Data Intuitive.
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
# Intuitive.
#
# The component may contain files which fall under a different license. The
# authors of this component should specify the license in the header of such
@@ -480,9 +480,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bed12tobed6"
LABEL org.opencontainers.image.created="2024-09-16T07:55:01Z"
LABEL org.opencontainers.image.created="2024-09-17T06:47:19Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="124d50ce5318b612e4a1e4da1be705523cd6eab7"
LABEL org.opencontainers.image.revision="38f635ad57ef05550bba3a0864c81627f84f5ad2"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

9
target/executable/bedtools/bedtools_bedtobam/.config.vsh.yaml
View File

@@ -213,15 +213,16 @@ build_info:
engine: "docker|native"
output: "target/executable/bedtools/bedtools_bedtobam"
executable: "target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam"
viash_version: "0.9.0-RC7"
git_commit: "124d50ce5318b612e4a1e4da1be705523cd6eab7"
git_remote: "https://x-access-token:ghs_royCfknE2TdPwJPOM1bW31Qho8HPrM4SPutG@github.com/viash-hub/biobox"
viash_version: "0.9.0"
git_commit: "38f635ad57ef05550bba3a0864c81627f84f5ad2"
git_remote: "https://x-access-token:ghs_wFnCgH6LWyegjU3sAMvKhUKRQxXHxx2DXwds@github.com/viash-hub/biobox"
git_tag: "v0.2.0-2-g38f635a"
package_config:
name: "biobox"
version: "main"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0-RC7"
viash_version: "0.9.0"
source: "src"
target: "target"
config_mods:

10
target/executable/bedtools/bedtools_bedtobam/bedtools_bedtobam
View File

@@ -2,9 +2,9 @@
# bedtools_bedtobam main
#
# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
# Data Intuitive.
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
# Intuitive.
#
# The component may contain files which fall under a different license. The
# authors of this component should specify the license in the header of such
@@ -496,9 +496,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_bedtobam"
LABEL org.opencontainers.image.created="2024-09-16T07:55:03Z"
LABEL org.opencontainers.image.created="2024-09-17T06:47:21Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="124d50ce5318b612e4a1e4da1be705523cd6eab7"
LABEL org.opencontainers.image.revision="38f635ad57ef05550bba3a0864c81627f84f5ad2"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

9
target/executable/bedtools/bedtools_genomecov/.config.vsh.yaml
View File

@@ -336,15 +336,16 @@ build_info:
engine: "docker|native"
output: "target/executable/bedtools/bedtools_genomecov"
executable: "target/executable/bedtools/bedtools_genomecov/bedtools_genomecov"
viash_version: "0.9.0-RC7"
git_commit: "124d50ce5318b612e4a1e4da1be705523cd6eab7"
git_remote: "https://x-access-token:ghs_royCfknE2TdPwJPOM1bW31Qho8HPrM4SPutG@github.com/viash-hub/biobox"
viash_version: "0.9.0"
git_commit: "38f635ad57ef05550bba3a0864c81627f84f5ad2"
git_remote: "https://x-access-token:ghs_wFnCgH6LWyegjU3sAMvKhUKRQxXHxx2DXwds@github.com/viash-hub/biobox"
git_tag: "v0.2.0-2-g38f635a"
package_config:
name: "biobox"
version: "main"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0-RC7"
viash_version: "0.9.0"
source: "src"
target: "target"
config_mods:

10
target/executable/bedtools/bedtools_genomecov/bedtools_genomecov
View File

@@ -2,9 +2,9 @@
# bedtools_genomecov main
#
# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
# Data Intuitive.
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
# Intuitive.
#
# The component may contain files which fall under a different license. The
# authors of this component should specify the license in the header of such
@@ -591,9 +591,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_genomecov"
LABEL org.opencontainers.image.created="2024-09-16T07:55:00Z"
LABEL org.opencontainers.image.created="2024-09-17T06:47:19Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="124d50ce5318b612e4a1e4da1be705523cd6eab7"
LABEL org.opencontainers.image.revision="38f635ad57ef05550bba3a0864c81627f84f5ad2"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

9
target/executable/bedtools/bedtools_getfasta/.config.vsh.yaml
View File

@@ -231,15 +231,16 @@ build_info:
engine: "docker|native"
output: "target/executable/bedtools/bedtools_getfasta"
executable: "target/executable/bedtools/bedtools_getfasta/bedtools_getfasta"
viash_version: "0.9.0-RC7"
git_commit: "124d50ce5318b612e4a1e4da1be705523cd6eab7"
git_remote: "https://x-access-token:ghs_royCfknE2TdPwJPOM1bW31Qho8HPrM4SPutG@github.com/viash-hub/biobox"
viash_version: "0.9.0"
git_commit: "38f635ad57ef05550bba3a0864c81627f84f5ad2"
git_remote: "https://x-access-token:ghs_wFnCgH6LWyegjU3sAMvKhUKRQxXHxx2DXwds@github.com/viash-hub/biobox"
git_tag: "v0.2.0-2-g38f635a"
package_config:
name: "biobox"
version: "main"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0-RC7"
viash_version: "0.9.0"
source: "src"
target: "target"
config_mods:

10
target/executable/bedtools/bedtools_getfasta/bedtools_getfasta
View File

@@ -2,9 +2,9 @@
# bedtools_getfasta main
#
# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
# Data Intuitive.
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
# Intuitive.
#
# The component may contain files which fall under a different license. The
# authors of this component should specify the license in the header of such
@@ -526,9 +526,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_getfasta"
LABEL org.opencontainers.image.created="2024-09-16T07:55:01Z"
LABEL org.opencontainers.image.created="2024-09-17T06:47:19Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="124d50ce5318b612e4a1e4da1be705523cd6eab7"
LABEL org.opencontainers.image.revision="38f635ad57ef05550bba3a0864c81627f84f5ad2"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

9
target/executable/bedtools/bedtools_groupby/.config.vsh.yaml
View File

@@ -272,15 +272,16 @@ build_info:
engine: "docker|native"
output: "target/executable/bedtools/bedtools_groupby"
executable: "target/executable/bedtools/bedtools_groupby/bedtools_groupby"
viash_version: "0.9.0-RC7"
git_commit: "124d50ce5318b612e4a1e4da1be705523cd6eab7"
git_remote: "https://x-access-token:ghs_royCfknE2TdPwJPOM1bW31Qho8HPrM4SPutG@github.com/viash-hub/biobox"
viash_version: "0.9.0"
git_commit: "38f635ad57ef05550bba3a0864c81627f84f5ad2"
git_remote: "https://x-access-token:ghs_wFnCgH6LWyegjU3sAMvKhUKRQxXHxx2DXwds@github.com/viash-hub/biobox"
git_tag: "v0.2.0-2-g38f635a"
package_config:
name: "biobox"
version: "main"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0-RC7"
viash_version: "0.9.0"
source: "src"
target: "target"
config_mods:

10
target/executable/bedtools/bedtools_groupby/bedtools_groupby
View File

@@ -2,9 +2,9 @@
# bedtools_groupby main
#
# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
# Data Intuitive.
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
# Intuitive.
#
# The component may contain files which fall under a different license. The
# authors of this component should specify the license in the header of such
@@ -552,9 +552,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_groupby"
LABEL org.opencontainers.image.created="2024-09-16T07:55:02Z"
LABEL org.opencontainers.image.created="2024-09-17T06:47:21Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="124d50ce5318b612e4a1e4da1be705523cd6eab7"
LABEL org.opencontainers.image.revision="38f635ad57ef05550bba3a0864c81627f84f5ad2"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

9
target/executable/bedtools/bedtools_intersect/.config.vsh.yaml
View File

@@ -409,15 +409,16 @@ build_info:
engine: "docker|native"
output: "target/executable/bedtools/bedtools_intersect"
executable: "target/executable/bedtools/bedtools_intersect/bedtools_intersect"
viash_version: "0.9.0-RC7"
git_commit: "124d50ce5318b612e4a1e4da1be705523cd6eab7"
git_remote: "https://x-access-token:ghs_royCfknE2TdPwJPOM1bW31Qho8HPrM4SPutG@github.com/viash-hub/biobox"
viash_version: "0.9.0"
git_commit: "38f635ad57ef05550bba3a0864c81627f84f5ad2"
git_remote: "https://x-access-token:ghs_wFnCgH6LWyegjU3sAMvKhUKRQxXHxx2DXwds@github.com/viash-hub/biobox"
git_tag: "v0.2.0-2-g38f635a"
package_config:
name: "biobox"
version: "main"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0-RC7"
viash_version: "0.9.0"
source: "src"
target: "target"
config_mods:

10
target/executable/bedtools/bedtools_intersect/bedtools_intersect
View File

@@ -2,9 +2,9 @@
# bedtools_intersect main
#
# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
# Data Intuitive.
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
# Intuitive.
#
# The component may contain files which fall under a different license. The
# authors of this component should specify the license in the header of such
@@ -633,9 +633,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_intersect"
LABEL org.opencontainers.image.created="2024-09-16T07:55:01Z"
LABEL org.opencontainers.image.created="2024-09-17T06:47:20Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="124d50ce5318b612e4a1e4da1be705523cd6eab7"
LABEL org.opencontainers.image.revision="38f635ad57ef05550bba3a0864c81627f84f5ad2"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

9
target/executable/bedtools/bedtools_links/.config.vsh.yaml
View File

@@ -209,15 +209,16 @@ build_info:
engine: "docker|native"
output: "target/executable/bedtools/bedtools_links"
executable: "target/executable/bedtools/bedtools_links/bedtools_links"
viash_version: "0.9.0-RC7"
git_commit: "124d50ce5318b612e4a1e4da1be705523cd6eab7"
git_remote: "https://x-access-token:ghs_royCfknE2TdPwJPOM1bW31Qho8HPrM4SPutG@github.com/viash-hub/biobox"
viash_version: "0.9.0"
git_commit: "38f635ad57ef05550bba3a0864c81627f84f5ad2"
git_remote: "https://x-access-token:ghs_wFnCgH6LWyegjU3sAMvKhUKRQxXHxx2DXwds@github.com/viash-hub/biobox"
git_tag: "v0.2.0-2-g38f635a"
package_config:
name: "biobox"
version: "main"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0-RC7"
viash_version: "0.9.0"
source: "src"
target: "target"
config_mods:

10
target/executable/bedtools/bedtools_links/bedtools_links
View File

@@ -2,9 +2,9 @@
# bedtools_links main
#
# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
# Data Intuitive.
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
# Intuitive.
#
# The component may contain files which fall under a different license. The
# authors of this component should specify the license in the header of such
@@ -500,9 +500,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_links"
LABEL org.opencontainers.image.created="2024-09-16T07:55:02Z"
LABEL org.opencontainers.image.created="2024-09-17T06:47:20Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="124d50ce5318b612e4a1e4da1be705523cd6eab7"
LABEL org.opencontainers.image.revision="38f635ad57ef05550bba3a0864c81627f84f5ad2"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

9
target/executable/bedtools/bedtools_merge/.config.vsh.yaml
View File

@@ -278,15 +278,16 @@ build_info:
engine: "docker|native"
output: "target/executable/bedtools/bedtools_merge"
executable: "target/executable/bedtools/bedtools_merge/bedtools_merge"
viash_version: "0.9.0-RC7"
git_commit: "124d50ce5318b612e4a1e4da1be705523cd6eab7"
git_remote: "https://x-access-token:ghs_royCfknE2TdPwJPOM1bW31Qho8HPrM4SPutG@github.com/viash-hub/biobox"
viash_version: "0.9.0"
git_commit: "38f635ad57ef05550bba3a0864c81627f84f5ad2"
git_remote: "https://x-access-token:ghs_wFnCgH6LWyegjU3sAMvKhUKRQxXHxx2DXwds@github.com/viash-hub/biobox"
git_tag: "v0.2.0-2-g38f635a"
package_config:
name: "biobox"
version: "main"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0-RC7"
viash_version: "0.9.0"
source: "src"
target: "target"
config_mods:

10
target/executable/bedtools/bedtools_merge/bedtools_merge
View File

@@ -2,9 +2,9 @@
# bedtools_merge main
#
# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
# Data Intuitive.
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
# Intuitive.
#
# The component may contain files which fall under a different license. The
# authors of this component should specify the license in the header of such
@@ -558,9 +558,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_merge"
LABEL org.opencontainers.image.created="2024-09-16T07:55:00Z"
LABEL org.opencontainers.image.created="2024-09-17T06:47:18Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="124d50ce5318b612e4a1e4da1be705523cd6eab7"
LABEL org.opencontainers.image.revision="38f635ad57ef05550bba3a0864c81627f84f5ad2"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

9
target/executable/bedtools/bedtools_sort/.config.vsh.yaml
View File

@@ -221,15 +221,16 @@ build_info:
engine: "docker|native"
output: "target/executable/bedtools/bedtools_sort"
executable: "target/executable/bedtools/bedtools_sort/bedtools_sort"
viash_version: "0.9.0-RC7"
git_commit: "124d50ce5318b612e4a1e4da1be705523cd6eab7"
git_remote: "https://x-access-token:ghs_royCfknE2TdPwJPOM1bW31Qho8HPrM4SPutG@github.com/viash-hub/biobox"
viash_version: "0.9.0"
git_commit: "38f635ad57ef05550bba3a0864c81627f84f5ad2"
git_remote: "https://x-access-token:ghs_wFnCgH6LWyegjU3sAMvKhUKRQxXHxx2DXwds@github.com/viash-hub/biobox"
git_tag: "v0.2.0-2-g38f635a"
package_config:
name: "biobox"
version: "main"
description: "A collection of bioinformatics tools for working with sequence data.\n"
info: null
viash_version: "0.9.0-RC7"
viash_version: "0.9.0"
source: "src"
target: "target"
config_mods:

10
target/executable/bedtools/bedtools_sort/bedtools_sort
View File

@@ -2,9 +2,9 @@
# bedtools_sort main
#
# This wrapper script is auto-generated by viash 0.9.0-RC7 and is thus a
# derivative work thereof. This software comes with ABSOLUTELY NO WARRANTY from
# Data Intuitive.
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
# Intuitive.
#
# The component may contain files which fall under a different license. The
# authors of this component should specify the license in the header of such
@@ -509,9 +509,9 @@ RUN echo "bedtools: \"$(bedtools --version | sed -n 's/^bedtools //p')\"" > /var
LABEL org.opencontainers.image.authors="Theodoro Gasperin Terra Camargo"
LABEL org.opencontainers.image.description="Companion container for running component bedtools bedtools_sort"
LABEL org.opencontainers.image.created="2024-09-16T07:55:03Z"
LABEL org.opencontainers.image.created="2024-09-17T06:47:21Z"
LABEL org.opencontainers.image.source="https://github.com/arq5x/bedtools2"
LABEL org.opencontainers.image.revision="124d50ce5318b612e4a1e4da1be705523cd6eab7"
LABEL org.opencontainers.image.revision="38f635ad57ef05550bba3a0864c81627f84f5ad2"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER