9 Commits

Author SHA1 Message Date
CI
27d6133895 Build branch biobox/main with version main to biobox on branch main (9991e9a)
Build pipeline: viash-hub.biobox.main-l6hlj

Source commit: 9991e9a4f5

Source message: Bump bases2fastq to 2.2.1 (#202)
2025-10-03 08:31:27 +00:00
CI
04a5851ff8 Build branch biobox/main with version main to biobox on branch main (7158daa)
Build pipeline: viash-hub.biobox.main-tb4cv

Source commit: 7158daa5f6

Source message: Fix bases2fastq component, update to latest practices (#190)

* wip updates

* refactor component

* assume bases2fastq follows semver

* fix version command

* add entry to changelog

* move to minor changes
2025-09-01 11:04:56 +00:00
CI
93f55cc2ee Build branch main with version main (ad89f43)
Build pipeline: viash-hub.biobox.main-dkgvl

Source commit: ad89f43726

Source message: Add authors to package config and update author information (#180)

* Add authors to package config and update author information

* update changelog

* add linkedin
2025-06-16 10:27:22 +00:00
CI
e3be4c4461 Build branch main with version main (b0db228)
Build pipeline: viash-hub.biobox.main-nmzjs

Source commit: b0db228825

Source message: Update readme (#177)

* update image

* add changelog

* make readme more generic

* fix url

* make images relative again
2025-05-06 20:36:16 +00:00
CI
af7bcfffa4 Build branch main with version main (c733de2)
Build pipeline: viash-hub.biobox.main-lltcw

Source commit: c733de2e4c

Source message: Bump viash to 0.9.4 (#175)

* Bump viash to 0.9.4

* Add CHANGELOG entry

* Add PR number
2025-04-30 07:01:27 +00:00
CI
a518d2ead8 Build branch main with version main (5f6516e)
Build pipeline: viash-hub.biobox.main-v9whr

Source commit: 5f6516e9c0

Source message: Bump viash version (#172)

* bump viash version

* fix agat requirements
2025-03-06 09:35:27 +00:00
CI
f47054953e Build branch main with version main (38f635a)
Build pipeline: viash-hub.biobox.main-dz9k8

Source commit: 38f635ad57

Source message: Add agat convert genscan2gff (#100)

* add config

* add help

* add test data and expected output adn the script to obtain them

* add running script

* add test script

* update changelog

* cleanup

* fix tests

* format description

* remove unused argument --inflate-off

* update --config description

* add requirements

* create temporary directory and clean up on exit

* add GENSCAN in keywords

* add set -e to test

* fix create temporary directory

* add set -eo pipefail to test

* add set -eo pipefail to script

* fix create temporary directory

* update --config description

* cleanup changelog

* cleanup changelog

* Update deprecated variable

---------

Co-authored-by: Robrecht Cannoodt <rcannood@gmail.com>
2024-09-17 07:19:20 +00:00
CI
b833613f7c Build branch main with version main (923a6da)
Build pipeline: viash-hub.biobox.main-dvp9l

Source commit: 923a6da389

Source message: Bug Fixed (#136)
2024-08-14 21:18:23 +00:00
CI
9c30676332 Build branch main with version main (d0c648f)
Build pipeline: vsh-ci-template-p9886

Source commit: d0c648fb7e

Source message: Delete src/bgzip directory (#64)

It was moved to toolbox
2024-06-24 08:40:34 +00:00