Build branch replace_falco_with_fastqc with version replace_falco_with_fastqc (b964c6b)

Build pipeline: viash-hub.demultiplex.replace-falco-with-fastqc-xmn6n Source commit: b964c6be51 Source message: Fix publishing of multiqc report
2025-05-27 20:23:12 +00:00
parent 24c77b6fe8
commit abcde69149
21 changed files with 42 additions and 42 deletions
--- a/src/runner/main.nf
+++ b/src/runner/main.nf
@@ -65,7 +65,7 @@ workflow run_wf {
            input_demultiplexer_logs: state.demultiplexer_logs,
            output: fastq_output_1,
            output_sample_qc: sample_qc_output_1,
-            multiqc_output: multiqc_output_1,
+            output_multiqc: multiqc_output_1,
            output_run_information: run_information_output_1,
            output_demultiplexer_logs: demultiplexer_logs_output,
          ]
--- a/target/executable/io/interop_summary_to_csv/.config.vsh.yaml
+++ b/target/executable/io/interop_summary_to_csv/.config.vsh.yaml
@@ -157,9 +157,9 @@ build_info:
  output: "target/executable/io/interop_summary_to_csv"
  executable: "target/executable/io/interop_summary_to_csv/interop_summary_to_csv"
  viash_version: "0.9.4"
-  git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108"
+  git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed"
  git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-34-g6e52690"
+  git_tag: "v0.1.1-35-gb964c6b"
 package_config:
  name: "demultiplex"
  version: "replace_falco_with_fastqc"
--- a/target/executable/io/interop_summary_to_csv/interop_summary_to_csv
+++ b/target/executable/io/interop_summary_to_csv/interop_summary_to_csv
@@ -454,9 +454,9 @@ tar -C /tmp/ --no-same-owner --no-same-permissions -xvf /tmp/interop.tar.gz && \
 mv /tmp/interop-1.3.1-Linux-GNU/bin/index-summary /tmp/interop-1.3.1-Linux-GNU/bin/summary /usr/local/bin/

 LABEL org.opencontainers.image.description="Companion container for running component io interop_summary_to_csv"
-LABEL org.opencontainers.image.created="2025-05-27T14:17:37Z"
+LABEL org.opencontainers.image.created="2025-05-27T20:00:48Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="6e52690e5e6552549d3803eb9f10a37f63dd0108"
+LABEL org.opencontainers.image.revision="b964c6be513b030c07afa48bfd3e4e6bb80644ed"
 LABEL org.opencontainers.image.version="replace_falco_with_fastqc"

 VIASHDOCKER
--- a/target/executable/io/publish/.config.vsh.yaml
+++ b/target/executable/io/publish/.config.vsh.yaml
@@ -219,9 +219,9 @@ build_info:
  output: "target/executable/io/publish"
  executable: "target/executable/io/publish/publish"
  viash_version: "0.9.4"
-  git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108"
+  git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed"
  git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-34-g6e52690"
+  git_tag: "v0.1.1-35-gb964c6b"
 package_config:
  name: "demultiplex"
  version: "replace_falco_with_fastqc"
--- a/target/executable/io/publish/publish
+++ b/target/executable/io/publish/publish
@@ -450,9 +450,9 @@ RUN apt-get update && \
  rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.description="Companion container for running component io publish"
-LABEL org.opencontainers.image.created="2025-05-27T14:17:38Z"
+LABEL org.opencontainers.image.created="2025-05-27T20:00:48Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="6e52690e5e6552549d3803eb9f10a37f63dd0108"
+LABEL org.opencontainers.image.revision="b964c6be513b030c07afa48bfd3e4e6bb80644ed"
 LABEL org.opencontainers.image.version="replace_falco_with_fastqc"

 VIASHDOCKER
--- a/target/executable/io/untar/.config.vsh.yaml
+++ b/target/executable/io/untar/.config.vsh.yaml
@@ -156,9 +156,9 @@ build_info:
  output: "target/executable/io/untar"
  executable: "target/executable/io/untar/untar"
  viash_version: "0.9.4"
-  git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108"
+  git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed"
  git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-34-g6e52690"
+  git_tag: "v0.1.1-35-gb964c6b"
 package_config:
  name: "demultiplex"
  version: "replace_falco_with_fastqc"
--- a/target/executable/io/untar/untar
+++ b/target/executable/io/untar/untar
@@ -450,9 +450,9 @@ RUN apt-get update && \
  rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.description="Companion container for running component io untar"
-LABEL org.opencontainers.image.created="2025-05-27T14:17:37Z"
+LABEL org.opencontainers.image.created="2025-05-27T20:00:48Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="6e52690e5e6552549d3803eb9f10a37f63dd0108"
+LABEL org.opencontainers.image.revision="b964c6be513b030c07afa48bfd3e4e6bb80644ed"
 LABEL org.opencontainers.image.version="replace_falco_with_fastqc"

 VIASHDOCKER
--- a/target/nextflow/dataflow/combine_samples/.config.vsh.yaml
+++ b/target/nextflow/dataflow/combine_samples/.config.vsh.yaml
@@ -165,9 +165,9 @@ build_info:
  output: "target/nextflow/dataflow/combine_samples"
  executable: "target/nextflow/dataflow/combine_samples/main.nf"
  viash_version: "0.9.4"
-  git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108"
+  git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed"
  git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-34-g6e52690"
+  git_tag: "v0.1.1-35-gb964c6b"
 package_config:
  name: "demultiplex"
  version: "replace_falco_with_fastqc"
--- a/target/nextflow/dataflow/combine_samples/main.nf
+++ b/target/nextflow/dataflow/combine_samples/main.nf
@@ -3230,9 +3230,9 @@ meta = [
    "engine" : "native|native",
    "output" : "target/nextflow/dataflow/combine_samples",
    "viash_version" : "0.9.4",
-    "git_commit" : "6e52690e5e6552549d3803eb9f10a37f63dd0108",
+    "git_commit" : "b964c6be513b030c07afa48bfd3e4e6bb80644ed",
    "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-34-g6e52690"
+    "git_tag" : "v0.1.1-35-gb964c6b"
  },
  "package_config" : {
    "name" : "demultiplex",
--- a/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml
+++ b/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml
@@ -156,9 +156,9 @@ build_info:
  output: "target/nextflow/dataflow/gather_fastqs_and_validate"
  executable: "target/nextflow/dataflow/gather_fastqs_and_validate/main.nf"
  viash_version: "0.9.4"
-  git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108"
+  git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed"
  git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-34-g6e52690"
+  git_tag: "v0.1.1-35-gb964c6b"
 package_config:
  name: "demultiplex"
  version: "replace_falco_with_fastqc"
--- a/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf
+++ b/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf
@@ -3227,9 +3227,9 @@ meta = [
    "engine" : "native|native",
    "output" : "target/nextflow/dataflow/gather_fastqs_and_validate",
    "viash_version" : "0.9.4",
-    "git_commit" : "6e52690e5e6552549d3803eb9f10a37f63dd0108",
+    "git_commit" : "b964c6be513b030c07afa48bfd3e4e6bb80644ed",
    "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-34-g6e52690"
+    "git_tag" : "v0.1.1-35-gb964c6b"
  },
  "package_config" : {
    "name" : "demultiplex",
--- a/target/nextflow/demultiplex/.config.vsh.yaml
+++ b/target/nextflow/demultiplex/.config.vsh.yaml
@@ -262,9 +262,9 @@ build_info:
  output: "target/nextflow/demultiplex"
  executable: "target/nextflow/demultiplex/main.nf"
  viash_version: "0.9.4"
-  git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108"
+  git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed"
  git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-34-g6e52690"
+  git_tag: "v0.1.1-35-gb964c6b"
  dependencies:
  - "target/nextflow/io/untar"
  - "target/nextflow/dataflow/gather_fastqs_and_validate"
--- a/target/nextflow/demultiplex/main.nf
+++ b/target/nextflow/demultiplex/main.nf
@@ -3369,9 +3369,9 @@ meta = [
    "engine" : "native|native",
    "output" : "target/nextflow/demultiplex",
    "viash_version" : "0.9.4",
-    "git_commit" : "6e52690e5e6552549d3803eb9f10a37f63dd0108",
+    "git_commit" : "b964c6be513b030c07afa48bfd3e4e6bb80644ed",
    "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-34-g6e52690"
+    "git_tag" : "v0.1.1-35-gb964c6b"
  },
  "package_config" : {
    "name" : "demultiplex",
--- a/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml
+++ b/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml
@@ -157,9 +157,9 @@ build_info:
  output: "target/nextflow/io/interop_summary_to_csv"
  executable: "target/nextflow/io/interop_summary_to_csv/main.nf"
  viash_version: "0.9.4"
-  git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108"
+  git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed"
  git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-34-g6e52690"
+  git_tag: "v0.1.1-35-gb964c6b"
 package_config:
  name: "demultiplex"
  version: "replace_falco_with_fastqc"
--- a/target/nextflow/io/interop_summary_to_csv/main.nf
+++ b/target/nextflow/io/interop_summary_to_csv/main.nf
@@ -3228,9 +3228,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/io/interop_summary_to_csv",
    "viash_version" : "0.9.4",
-    "git_commit" : "6e52690e5e6552549d3803eb9f10a37f63dd0108",
+    "git_commit" : "b964c6be513b030c07afa48bfd3e4e6bb80644ed",
    "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-34-g6e52690"
+    "git_tag" : "v0.1.1-35-gb964c6b"
  },
  "package_config" : {
    "name" : "demultiplex",
--- a/target/nextflow/io/publish/.config.vsh.yaml
+++ b/target/nextflow/io/publish/.config.vsh.yaml
@@ -219,9 +219,9 @@ build_info:
  output: "target/nextflow/io/publish"
  executable: "target/nextflow/io/publish/main.nf"
  viash_version: "0.9.4"
-  git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108"
+  git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed"
  git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-34-g6e52690"
+  git_tag: "v0.1.1-35-gb964c6b"
 package_config:
  name: "demultiplex"
  version: "replace_falco_with_fastqc"
--- a/target/nextflow/io/publish/main.nf
+++ b/target/nextflow/io/publish/main.nf
@@ -3297,9 +3297,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/io/publish",
    "viash_version" : "0.9.4",
-    "git_commit" : "6e52690e5e6552549d3803eb9f10a37f63dd0108",
+    "git_commit" : "b964c6be513b030c07afa48bfd3e4e6bb80644ed",
    "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-34-g6e52690"
+    "git_tag" : "v0.1.1-35-gb964c6b"
  },
  "package_config" : {
    "name" : "demultiplex",
--- a/target/nextflow/io/untar/.config.vsh.yaml
+++ b/target/nextflow/io/untar/.config.vsh.yaml
@@ -156,9 +156,9 @@ build_info:
  output: "target/nextflow/io/untar"
  executable: "target/nextflow/io/untar/main.nf"
  viash_version: "0.9.4"
-  git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108"
+  git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed"
  git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-34-g6e52690"
+  git_tag: "v0.1.1-35-gb964c6b"
 package_config:
  name: "demultiplex"
  version: "replace_falco_with_fastqc"
--- a/target/nextflow/io/untar/main.nf
+++ b/target/nextflow/io/untar/main.nf
@@ -3227,9 +3227,9 @@ meta = [
    "engine" : "docker|native",
    "output" : "target/nextflow/io/untar",
    "viash_version" : "0.9.4",
-    "git_commit" : "6e52690e5e6552549d3803eb9f10a37f63dd0108",
+    "git_commit" : "b964c6be513b030c07afa48bfd3e4e6bb80644ed",
    "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-34-g6e52690"
+    "git_tag" : "v0.1.1-35-gb964c6b"
  },
  "package_config" : {
    "name" : "demultiplex",
--- a/target/nextflow/runner/.config.vsh.yaml
+++ b/target/nextflow/runner/.config.vsh.yaml
@@ -211,9 +211,9 @@ build_info:
  output: "target/nextflow/runner"
  executable: "target/nextflow/runner/main.nf"
  viash_version: "0.9.4"
-  git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108"
+  git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed"
  git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-34-g6e52690"
+  git_tag: "v0.1.1-35-gb964c6b"
  dependencies:
  - "target/nextflow/demultiplex"
  - "target/nextflow/io/publish"
--- a/target/nextflow/runner/main.nf
+++ b/target/nextflow/runner/main.nf
@@ -3291,9 +3291,9 @@ meta = [
    "engine" : "native|native",
    "output" : "target/nextflow/runner",
    "viash_version" : "0.9.4",
-    "git_commit" : "6e52690e5e6552549d3803eb9f10a37f63dd0108",
+    "git_commit" : "b964c6be513b030c07afa48bfd3e4e6bb80644ed",
    "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-34-g6e52690"
+    "git_tag" : "v0.1.1-35-gb964c6b"
  },
  "package_config" : {
    "name" : "demultiplex",
@@ -3406,7 +3406,7 @@ workflow run_wf {
            input_demultiplexer_logs: state.demultiplexer_logs,
            output: fastq_output_1,
            output_sample_qc: sample_qc_output_1,
-            multiqc_output: multiqc_output_1,
+            output_multiqc: multiqc_output_1,
            output_run_information: run_information_output_1,
            output_demultiplexer_logs: demultiplexer_logs_output,
          ]