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214329783f6718efd7f953c5e2bca957bd31c224
Commit Graph

34 Commits

Author SHA1 Message Date
CI
214329783f Build branch main with version main (0d4c458) 
Build pipeline: viash-hub.demultiplex.main-zst7j

Source commit: 0d4c4584f0

Source message: Only publish transfer_complete.txt file when the exit code is 0 (#58)
 2025-08-05 11:20:53 +00:00
CI
14fd9abcd0 Build branch main with version main (76a469a) 
Build pipeline: viash-hub.demultiplex.main-8px8m

Source commit: 76a469a0dd

Source message: Add 'transfer_completed.txt' file at the end of publishing (#57)
 2025-07-29 09:31:24 +00:00
CI
94f9d77fb2 Build branch main with version main (ef44f4d) 
Build pipeline: viash-hub.demultiplex.main-xsnpt

Source commit: ef44f4d20e

Source message: Return output from runner (#56)
 2025-07-28 13:06:10 +00:00
CI
abe9c15aef Build branch main with version main (88d11c3) 
Build pipeline: viash-hub.demultiplex.main-qmhzd

Source commit: 88d11c3926

Source message: Package config introspection improvement (#53)

* Make _viash.yaml available to all components and workflows for introspection
* Update integration test for runner
 2025-07-25 08:51:07 +00:00
CI
10ff085552 Build branch main with version main (26bd658) 
Build pipeline: viash-hub.demultiplex.main-qzwsk

Source commit: 26bd658d6e

Source message: Add detect_demultiplexer subworkflow (#52)
 2025-06-10 07:25:05 +00:00
CI
50ab36217a Build branch main with version main (6e71519) 
Build pipeline: viash-hub.demultiplex.main-wxzkf

Source commit: 6e71519815

Source message: Replace Falco with FastQC (#51)
 2025-05-28 11:25:23 +00:00
CI
029f2aee81 Build branch main with version main (219bd58) 
Build pipeline: viash-hub.demultiplex.main-ks4jt

Source commit: 219bd5816e

Source message: Allow 'Undetermined' samples to be empty. (#50)
 2025-05-26 10:56:01 +00:00
CI
b720ad07f9 Build branch main with version main (f591b78) 
Build pipeline: viash-hub.demultiplex.main-p5t6v

Source commit: f591b7849f

Source message: Output demultiplexer log files (#41)
 2025-05-14 08:38:23 +00:00
CI
9660348996 Build branch main with version main (7a14841) 
Build pipeline: viash-hub.demultiplex.main-8bq88

Source commit: 7a14841ac6

Source message: Update test resources (#37)
 2025-04-29 14:55:53 +00:00
CI
60ee0cd261 Build branch main with version main (9f37358) 
Build pipeline: viash-hub.demultiplex.main-f597w

Source commit: 9f37358ebf

Source message: Minor adjustments to CHANGELOG and README (#45)
 2025-04-25 12:20:54 +00:00
CI
eb6fd9e999 Build branch main with version main (162497a) 
Build pipeline: viash-hub.demultiplex.main-ss9kt

Source commit: 162497ab73

Source message: Bump viash to 0.9.3 (#43)

* Bump viash to 0.9.3

* Add CHANGELOG
 2025-04-22 12:11:00 +00:00
CI
51fdf9e8bf Build branch main with version main (0c27ec1) 
Build pipeline: viash-hub.demultiplex.main-kdjmg

Source commit: 0c27ec1436

Source message: Assert that demultiplexed FASTQ files are not empty (#40)
 2025-03-27 16:12:48 +00:00
CI
26f9bf6da2 Build branch main with version main (0acfda6) 
Build pipeline: viash-hub.demultiplex.main-zmw5v

Source commit: 0acfda628d

Source message: Ignore lines starting with '#' in run information file (#39)
 2025-03-20 20:56:23 +00:00
CI
d521259fcf Build branch main with version main (55699d2) 
Build pipeline: viash-hub.demultiplex.main-z5mvc

Source commit: 55699d24c0

Source message: Allow letter case variations in run information CSV (#38)
 2025-03-20 19:54:44 +00:00
CI
e16f7d7290 Build branch main with version main (795abd6) 
Build pipeline: viash-hub.demultiplex.main-4xxbp

Source commit: 795abd6868

Source message: Run Falco in parallel for each well (#33)
 2025-03-04 06:00:00 +00:00
CI
eb8d600efc Build branch main with version main (dd1f934) 
Build pipeline: viash-hub.demultiplex.main-v6krs

Source commit: dd1f93487f

Source message: Add check for the presence of a 'CopyComplete.txt' file (#34)
 2025-01-14 12:10:26 +00:00
CI
8c1737e627 Build branch main with version main (8da2bf2) 
Build pipeline: viash-hub.demultiplex.main-vz4xq

Source commit: 8da2bf20c5

Source message: Bump viash (#35)

* Bump viash to 0.9.1

* Fix config for interop_summary_to_csv

---------

Co-authored-by: DriesSchaumont <5946712+DriesSchaumont@users.noreply.github.com>
 2025-01-14 11:49:24 +00:00
CI
a9c53897f5 Build branch main with version main (d7d3b3e) 
Build pipeline: viash-hub.demultiplex.main-6k4dk

Source commit: d7d3b3e1de

Source message: Automatically include resources labels during build (#32)
 2024-12-20 11:30:10 +00:00
CI
ce3c3eb442 Build branch main with version main (798e361) 
Build pipeline: viash-hub.demultiplex.main-plzkv

Source commit: 798e361afe

Source message: Add run information to output (#31)
 2024-12-19 15:54:37 +00:00
CI
43010e8c57 Build branch main with version main (8d3c288) 
Build pipeline: viash-hub.demultiplex.main-mgtgd

Source commit: 8d3c2888d6

Source message: Improved output logic (#30)

* Improved output logic

* Strip suffix only + update description

* Apply suggestions from code review

Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>

---------

Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
 2024-12-18 15:15:49 +00:00
CI
6be5d38b03 Build branch main with version main (45accaa) 
Build pipeline: viash-hub.demultiplex.main-ghkns

Source commit: 45accaa50e

Source message: Avoid empty csv entries when parsing sample information (#29)
 2024-12-11 18:06:57 +00:00
CI
2121a3ac1c Build branch main with version main (5c096fc) 
Build pipeline: viash-hub.demultiplex.main-svj8q

Source commit: 5c096fce40

Source message: Fixes for v0.3.0 (#27)

Co-authored-by: DriesSchaumont <5946712+DriesSchaumont@users.noreply.github.com>
 2024-12-11 15:44:12 +00:00
CI
0e0262257b Build branch main with version main (d3a9c9b) 
Build pipeline: viash-hub.demultiplex.main-gcqps

Source commit: d3a9c9b3be

Source message: Fix detection of sample names from Illumina V2 sample sheets (#28)
 2024-12-11 14:22:44 +00:00
CI
ef54635d93 Build branch main with version main (b7e30f3) 
Build pipeline: viash-hub.demultiplex.main-b6qtk

Source commit: b7e30f394e

Source message: Revert 64a371e, update CHANGELOG for 0.3.0 (#26)
 2024-12-11 09:30:29 +00:00
CI
73c077fd82 Build branch main with version main (64a371e) 
Build pipeline: viash-hub.demultiplex.main-lcwkk

Source commit: 64a371e168

Source message: Update CHANGELOG for 0.2.0 (#25)
 2024-12-11 09:03:18 +00:00
CI
fcc3a4d62e Build branch main with version main (6e6be28) 
Build pipeline: viash-hub.demultiplex.main-wmjf8

Source commit: 6e6be28b85

Source message: Prepare CHANGELOG for release 0.2.0
 2024-12-05 10:37:33 +00:00
CI
304b1d24b3 Build branch main with version main (5cb1323) 
Build pipeline: viash-hub.demultiplex.main-6d5fm

Source commit: 5cb13230bf

Source message: Add resource labels to workflows. (#22)

* Add resource labels to workflows.

* Add CHANGELOG entry
 2024-11-06 17:52:30 +00:00
CI
0e5d645386 Build branch main with version main (a311a12) 
Build pipeline: viash-hub.demultiplex.main-7bh8g

Source commit: a311a12056

Source message: Update integration tests (#18)

* Updated test data (version) and pointer + variable
* Add resources_test argument in unit test
 2024-10-08 12:39:21 +00:00
CI
e52e4f7724 Build branch main with version main (aca8016) 
Build pipeline: viash-hub.demultiplex.main-dh5jf

Source commit: aca8016d74

Source message: Trigger CI
 2024-09-17 15:30:40 +00:00
CI
8f515c1dfe Build branch main with version main (aca8016) 
Build pipeline: viash-hub.demultiplex.main-lqbf6

Source commit: aca8016d74

Source message: Trigger CI
 2024-09-17 15:10:09 +00:00
CI
4f93c90b47 Build branch main with version main (aca8016) 
Build pipeline: viash-hub.demultiplex.main-gl2l5

Source commit: aca8016d74

Source message: Trigger CI
 2024-09-17 14:38:40 +00:00
CI
ebd9b69856 Build branch main with version main (399e469) 
Build pipeline: viash-hub.demultiplex.main-f55jt

Source commit: 399e46901d

Source message: Add test_resources to .gitignore
 2024-09-13 09:46:12 +00:00
CI
6c37efac8f Build branch main with version main (cfefb99) 
Build pipeline: viash-hub.demultiplex.main-ks8mz

Source commit: cfefb99ef0

Source message: Bump Viash version to 0.9.0
 2024-09-12 12:30:59 +00:00
CI
54d722dcb7 Build branch main with version main (ed860be) 
Build pipeline: vsh-ci-template-hp9jh

Source commit: ed860bed30

Source message: BUG: Wrong pointer to biobox dependency (#15)

* Fix pointer to biobox

* Add PR number
 2024-06-24 12:48:53 +00:00