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Build branch htrnaseq/main with version main to htrnaseq on branch main (92755e8)

Browse Source 
Build pipeline: viash-hub.htrnaseq.main-srl6j

Source commit: 92755e84e7

Source message: Runner: output state and rework publishing (#68)

* add eset output param

* add outputs to publishing and runner

* update publishing

* Update publishing

* Remove debug statements

* Undo change to integration test script

* Add asserts

* Fix asserts and canonicalization of publish paths

* Move fData to folder

* Add CHANGELOG entry [ci skip]

---------

Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
This commit is contained in:
CI
2025-09-02 14:03:52 +00:00
parent f683dfcf8e
commit 8a9db1b415
13 changed files with 13 additions and 13 deletions
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2
target/executable/eset/create_eset/create_eset
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@@ -456,7 +456,7 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_eset"
LABEL org.opencontainers.image.created="2025-09-02T07:26:24Z"
LABEL org.opencontainers.image.created="2025-09-02T13:10:27Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd"
LABEL org.opencontainers.image.version="main"

2
target/executable/eset/create_fdata/create_fdata
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@@ -458,7 +458,7 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_fdata"
LABEL org.opencontainers.image.created="2025-09-02T07:26:22Z"
LABEL org.opencontainers.image.created="2025-09-02T13:10:26Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd"
LABEL org.opencontainers.image.version="main"

2
target/executable/eset/create_pdata/create_pdata
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@@ -458,7 +458,7 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_pdata"
LABEL org.opencontainers.image.created="2025-09-02T07:26:23Z"
LABEL org.opencontainers.image.created="2025-09-02T13:10:27Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd"
LABEL org.opencontainers.image.version="main"

2
target/executable/integration_test_components/htrnaseq/check_eset/check_eset
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@@ -455,7 +455,7 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/htrnaseq check_eset"
LABEL org.opencontainers.image.created="2025-09-02T07:26:23Z"
LABEL org.opencontainers.image.created="2025-09-02T13:10:27Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd"
LABEL org.opencontainers.image.version="main"

2
target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output
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@@ -457,7 +457,7 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/well_demultiplexing check_cutadapt_output"
LABEL org.opencontainers.image.created="2025-09-02T07:26:23Z"
LABEL org.opencontainers.image.created="2025-09-02T13:10:27Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd"
LABEL org.opencontainers.image.version="main"

2
target/executable/io/publish_fastqs/publish_fastqs
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@@ -450,7 +450,7 @@ RUN apt-get update && \
rm -rf /var/lib/apt/lists/*
LABEL org.opencontainers.image.description="Companion container for running component io publish_fastqs"
LABEL org.opencontainers.image.created="2025-09-02T07:26:23Z"
LABEL org.opencontainers.image.created="2025-09-02T13:10:27Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd"
LABEL org.opencontainers.image.version="main"

2
target/executable/io/publish_results/publish_results
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@@ -450,7 +450,7 @@ RUN apt-get update && \
rm -rf /var/lib/apt/lists/*
LABEL org.opencontainers.image.description="Companion container for running component io publish_results"
LABEL org.opencontainers.image.created="2025-09-02T07:26:23Z"
LABEL org.opencontainers.image.created="2025-09-02T13:10:27Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd"
LABEL org.opencontainers.image.version="main"

2
target/executable/parallel_map/parallel_map
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@@ -461,7 +461,7 @@ ENV STAR_BINARY=STAR
COPY STAR /usr/local/bin/$STAR_BINARY
LABEL org.opencontainers.image.authors="Dries Schaumont, Toni Verbeiren"
LABEL org.opencontainers.image.description="Companion container for running component parallel_map"
LABEL org.opencontainers.image.created="2025-09-02T07:26:22Z"
LABEL org.opencontainers.image.created="2025-09-02T13:10:26Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd"
LABEL org.opencontainers.image.version="main"

2
target/executable/report/create_report/create_report
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@@ -465,7 +465,7 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component report create_report"
LABEL org.opencontainers.image.created="2025-09-02T07:26:22Z"
LABEL org.opencontainers.image.created="2025-09-02T13:10:26Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd"
LABEL org.opencontainers.image.version="main"

2
target/executable/stats/combine_star_logs/combine_star_logs
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@@ -457,7 +457,7 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component stats combine_star_logs"
LABEL org.opencontainers.image.created="2025-09-02T07:26:22Z"
LABEL org.opencontainers.image.created="2025-09-02T13:10:26Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd"
LABEL org.opencontainers.image.version="main"

2
target/executable/stats/generate_pool_statistics/generate_pool_statistics
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@@ -458,7 +458,7 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component stats generate_pool_statistics"
LABEL org.opencontainers.image.created="2025-09-02T07:26:22Z"
LABEL org.opencontainers.image.created="2025-09-02T13:10:26Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd"
LABEL org.opencontainers.image.version="main"

2
target/executable/stats/generate_well_statistics/generate_well_statistics
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@@ -458,7 +458,7 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component stats generate_well_statistics"
LABEL org.opencontainers.image.created="2025-09-02T07:26:22Z"
LABEL org.opencontainers.image.created="2025-09-02T13:10:26Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd"
LABEL org.opencontainers.image.version="main"

2
target/executable/utils/save_params/save_params
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@@ -453,7 +453,7 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "pyyaml"
LABEL org.opencontainers.image.description="Companion container for running component utils save_params"
LABEL org.opencontainers.image.created="2025-09-02T07:26:22Z"
LABEL org.opencontainers.image.created="2025-09-02T13:10:26Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd"
LABEL org.opencontainers.image.version="main"