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107091b851
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Build branch htrnaseq/main with version main to htrnaseq on branch main (5d5edb7)
Build pipeline: vsh-ci-build-template-j6nf8
Source commit: 5d5edb7888
Source message: Runner: avoid duplicate input paths when publishing results (#76)
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2025-09-23 12:06:25 +00:00 |
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4216c221ee
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Build branch htrnaseq/main with version main to htrnaseq on branch main (03e7939)
Build pipeline: viash-hub.htrnaseq.main-s7m5b
Source commit: 03e7939a9b
Source message: Add integration test for generating a single eset (#73)
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2025-09-10 19:55:10 +00:00 |
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f683dfcf8e
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Build branch htrnaseq/main with version main to htrnaseq on branch main (92755e8)
Build pipeline: viash-hub.htrnaseq.main-666pl
Source commit: 92755e84e7
Source message: Runner: output state and rework publishing (#68)
* add eset output param
* add outputs to publishing and runner
* update publishing
* Update publishing
* Remove debug statements
* Undo change to integration test script
* Add asserts
* Fix asserts and canonicalization of publish paths
* Move fData to folder
* Add CHANGELOG entry [ci skip]
---------
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
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2025-09-02 08:17:05 +00:00 |
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b51996294b
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Build branch main with version main (d70fdf2)
Build pipeline: viash-hub.htrnaseq.main-66qr4
Source commit: d70fdf2a6f
Source message: Fix processing multiple lanes. (#67)
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2025-08-18 11:34:46 +00:00 |
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e24f1ffc55
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Build branch main with version main (60df288)
Build pipeline: viash-hub.htrnaseq.main-7kcqt
Source commit: 60df288f92
Source message: Replace ignore parameter with pools (#66)
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2025-08-05 14:17:29 +00:00 |
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36bd60bf4c
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Build branch main with version main (5a046ba)
Build pipeline: viash-hub.htrnaseq.main-vzhp4
Source commit: 5a046ba003
Source message: Fix detection of FASTQ files with non-alphanumerical sample names. (#65)
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2025-08-01 11:53:04 +00:00 |
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6f76b49468
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Build branch main with version main (10d3b38)
Build pipeline: viash-hub.htrnaseq.main-77sg6
Source commit: 10d3b382d6
Source message: Add runner integration tests, revert ec0dd8b (#64)
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2025-08-01 10:14:18 +00:00 |
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060c9c49a8
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Build branch main with version main (0e87de8)
Build pipeline: viash-hub.htrnaseq.main-29nvl
Source commit: 0e87de80bc
Source message: Bump craftbox to v0.2.0 (#62)
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2025-07-29 11:27:25 +00:00 |
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ef4cabdcee
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Build branch main with version main (a3b7ae3)
Build pipeline: viash-hub.htrnaseq.main-fmznz
Source commit: a3b7ae3f31
Source message: update biobox and craftbox versions (#60)
* update biobox and craftbox versions
* update changelog
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2025-07-25 08:53:08 +00:00 |
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50ef7470fa
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Build branch main with version main (7e47ecc)
Build pipeline: viash-hub.htrnaseq.main-c4nnv
Source commit: 7e47ecc5db
Source message: Update README for 0.8.1 (#57)
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2025-05-16 09:57:56 +00:00 |
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e6f4877f17
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Build branch main with version main (c7c8471)
Build pipeline: viash-hub.htrnaseq.main-dwqr2
Source commit: c7c84719b5
Source message: Update test resources (#47)
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2025-05-14 08:50:22 +00:00 |
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82fb757e19
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Build branch main with version main (d179f82)
Build pipeline: viash-hub.htrnaseq.main-7j6qt
Source commit: d179f82421
Source message: Save input params (#48)
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2025-05-08 14:45:21 +00:00 |
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69b6860b63
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Build branch main with version main (28e59b1)
Build pipeline: viash-hub.htrnaseq.main-6pfd6
Source commit: 28e59b1fb7
Source message: Update readme (#54)
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2025-05-07 10:40:18 +00:00 |
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c87d678e2d
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Build branch main with version main (a62a15e)
Build pipeline: viash-hub.htrnaseq.main-bp4wc
Source commit: a62a15edd2
Source message: Clean CHANGELOG (#53)
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2025-04-30 11:23:27 +00:00 |
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ccd3e04ddc
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Build branch main with version main (a948c26)
Build pipeline: viash-hub.htrnaseq.main-qpqxt
Source commit: a948c26193
Source message: Bump viash to 0.9.4 (#51)
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2025-04-29 13:35:02 +00:00 |
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a95268a2b5
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Build branch main with version main (cb58990)
Build pipeline: viash-hub.htrnaseq.main-mjsqg
Source commit: cb58990a33
Source message: Fix create_report build after R update (#52)
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2025-04-29 12:11:45 +00:00 |
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82d0d471e5
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Build branch main with version main (0cb29cf)
Build pipeline: viash-hub.htrnaseq.main-92wqj
Source commit: 0cb29cf43a
Source message: Keep well demultiplexing output split per sequencing run (#49)
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2025-03-27 13:24:36 +00:00 |
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ee093a387e
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Build branch main with version main (ebb533e)
Build pipeline: viash-hub.htrnaseq.main-kchgg
Source commit: ebb533e982
Source message: Add 'data_processed' subdir to output structure (#45)
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2025-03-20 09:12:44 +00:00 |
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df41c7466c
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Build branch main with version main (8dff52a)
Build pipeline: viash-hub.htrnaseq.main-j2rpn
Source commit: 8dff52a885
Source message: Add `umi_length` parameter to runner. (#46)
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2025-02-28 14:10:10 +00:00 |
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e5a3fd36ee
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Build branch main with version main (bd5b2d4)
Build pipeline: viash-hub.htrnaseq.main-l2658
Source commit: bd5b2d4171
Source message: Keep contents for barcodes with no mapped reads. (#44)
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2025-02-21 11:49:43 +00:00 |
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6468e4a5de
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Build branch main with version main (3c05b79)
Build pipeline: viash-hub.htrnaseq.main-bc45k
Source commit: 3c05b7950b
Source message: Remove duplicate entries from feature data (#41)
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2025-02-17 15:45:09 +00:00 |
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1f84d46798
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Build branch main with version main (a0a780a)
Build pipeline: viash-hub.htrnaseq.main-szxtm
Source commit: a0a780a9c1
Source message: Fix two bugs with missing or empty input data. (#40)
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2025-02-17 08:33:57 +00:00 |
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96e74933b4
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Build branch main with version main (55b0251)
Build pipeline: viash-hub.htrnaseq.main-ddh59
Source commit: 55b025124d
Source message: Add ignore parameter (#39)
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2025-02-14 11:38:08 +00:00 |
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9eac6fff21
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Build branch main with version main (900f5ed)
Build pipeline: viash-hub.htrnaseq.main-2ww7f
Source commit: 900f5ed356
Source message: Runner: allow multiple input directories. (#38)
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2025-02-13 16:08:09 +00:00 |
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34f9a5c19d
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Build branch main with version main (8eb391e)
Build pipeline: viash-hub.htrnaseq.main-xhqqt
Source commit: 8eb391e3eb
Source message: Revert Viash version back to v0.9.0
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2025-01-17 14:36:29 +00:00 |
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37c4f5eb25
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Build branch main with version main (d8c0c0f)
Build pipeline: viash-hub.htrnaseq.main-fc9g5
Source commit: d8c0c0f518
Source message: Create umi_length parameter and infer barcode length from sequence (#27)
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2025-01-14 09:07:18 +00:00 |
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f86c73dccb
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Build branch main with version main (4a6fc35)
Build pipeline: viash-hub.htrnaseq.main-28fl2
Source commit: 4a6fc3588e
Source message: Revert "Update CHANGELOG"
This reverts commit c60a634969d34e989740db7ec82aaa1ef2e65fd0.
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2025-01-10 16:33:56 +00:00 |
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5196df6cd0
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Build branch main with version main (1e04724)
Build pipeline: viash-hub.htrnaseq.main-qcd6f
Source commit: 1e04724002
Source message: Integration tests: check contents of demultiplexing output (#25)
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2024-12-20 11:27:04 +00:00 |
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51a1df053e
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Build branch main with version main (e3a7de4)
Build pipeline: viash-hub.htrnaseq.main-x6qhq
Source commit: e3a7de40e8
Source message: Fix for cutadapt's --no-indels not being applied (#24)
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2024-12-19 14:11:12 +00:00 |
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51245a8027
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Build branch main with version main (f6cf9bf)
Build pipeline: viash-hub.htrnaseq.main-8lw6k
Source commit: f6cf9bf06a
Source message: Avoid using main tag of biobox (#23)
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2024-12-18 14:31:23 +00:00 |
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7385b3aa64
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Build branch main with version main (da93558)
Build pipeline: viash-hub.htrnaseq.main-rr9vk
Source commit: da935587f3
Source message: Check for wellID and generalization of plate layout (#21)
Co-authored-by: DriesSchaumont <5946712+DriesSchaumont@users.noreply.github.com>
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2024-12-17 17:23:57 +00:00 |
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554d5253fe
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Build branch main with version main (82647a4)
Build pipeline: viash-hub.htrnaseq.main-8kbhw
Source commit: 82647a421d
Source message: Assert that the Well ID matches the required format (#22)
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2024-12-17 15:30:58 +00:00 |
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f2ff92c6ac
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Build branch main with version main (65dd41d)
Build pipeline: viash-hub.htrnaseq.main-vhms8
Source commit: 65dd41d8b1
Source message: Optimize spawning of processes
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2024-11-05 17:26:35 +00:00 |
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b8abf8c490
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Build branch main with version main (cf97972)
Build pipeline: viash-hub.htrnaseq.main-6f8s8
Source commit: cf9797232d
Source message: WIP: add component to parse STAR logs (#7)
* WIP: add component to parse STAR logs
* Add tests and logging
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2024-09-17 09:02:15 +00:00 |
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bde35f120c
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Build branch main with version main (b98f636)
Build pipeline: viash-hub.htrnaseq.main-48gzk
Source commit: b98f6367d6
Source message: Add BAM statistics calculations on pool and well level (#6)
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2024-08-29 12:41:46 +00:00 |
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