Build branch build/main with version build_main (f502b8c)

Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-rlkth Source commit: f502b8c8ed Source message: deploy: 682726d700c3dfee0d010cfab173f7dca71a19b1
2025-06-06 10:04:01 +00:00
parent 9097024992
commit 9784094499
17 changed files with 41 additions and 41 deletions
--- a/_viash.yaml
+++ b/_viash.yaml
@@ -1,7 +1,7 @@
 viash_version: 0.9.3
 source: src
 target: target
-name: incubator
+name: openpipeline_spatial
 organization: openpipelines-bio
 links:
  repository: https://github.com/openpipelines-bio/openpipeline_spatial
--- a/target/executable/convert/from_cosmx_to_h5mu/.config.vsh.yaml
+++ b/target/executable/convert/from_cosmx_to_h5mu/.config.vsh.yaml
@@ -231,10 +231,10 @@ build_info:
  output: "target/executable/convert/from_cosmx_to_h5mu"
  executable: "target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu"
  viash_version: "0.9.3"
-  git_commit: "4e9723127ddb6353bf8f7f2ed65f880f77cbe764"
+  git_commit: "f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
-  name: "incubator"
+  name: "openpipeline_spatial"
  version: "build_main"
  info:
    test_resources:
--- a/target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu
+++ b/target/executable/convert/from_cosmx_to_h5mu/from_cosmx_to_h5mu
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_cosmx_to_h5mu"
-LABEL org.opencontainers.image.created="2025-06-06T07:01:22Z"
+LABEL org.opencontainers.image.created="2025-06-06T09:56:25Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="4e9723127ddb6353bf8f7f2ed65f880f77cbe764"
+LABEL org.opencontainers.image.revision="f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4"
 LABEL org.opencontainers.image.version="build_main"

 VIASHDOCKER
@@ -828,7 +828,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/incubator/convert/from_cosmx_to_h5mu:build_main'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_spatial/convert/from_cosmx_to_h5mu:build_main'
  fi

  # print dockerfile
--- a/target/executable/convert/from_spatialdata_to_h5mu/.config.vsh.yaml
+++ b/target/executable/convert/from_spatialdata_to_h5mu/.config.vsh.yaml
@@ -217,10 +217,10 @@ build_info:
  output: "target/executable/convert/from_spatialdata_to_h5mu"
  executable: "target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu"
  viash_version: "0.9.3"
-  git_commit: "4e9723127ddb6353bf8f7f2ed65f880f77cbe764"
+  git_commit: "f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
-  name: "incubator"
+  name: "openpipeline_spatial"
  version: "build_main"
  info:
    test_resources:
--- a/target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu
+++ b/target/executable/convert/from_spatialdata_to_h5mu/from_spatialdata_to_h5mu
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_spatialdata_to_h5mu"
-LABEL org.opencontainers.image.created="2025-06-06T07:01:22Z"
+LABEL org.opencontainers.image.created="2025-06-06T09:56:25Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="4e9723127ddb6353bf8f7f2ed65f880f77cbe764"
+LABEL org.opencontainers.image.revision="f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4"
 LABEL org.opencontainers.image.version="build_main"

 VIASHDOCKER
@@ -797,7 +797,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/incubator/convert/from_spatialdata_to_h5mu:build_main'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_spatial/convert/from_spatialdata_to_h5mu:build_main'
  fi

  # print dockerfile
--- a/target/executable/convert/from_xenium_to_spatialdata/.config.vsh.yaml
+++ b/target/executable/convert/from_xenium_to_spatialdata/.config.vsh.yaml
@@ -314,10 +314,10 @@ build_info:
  output: "target/executable/convert/from_xenium_to_spatialdata"
  executable: "target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata"
  viash_version: "0.9.3"
-  git_commit: "4e9723127ddb6353bf8f7f2ed65f880f77cbe764"
+  git_commit: "f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
-  name: "incubator"
+  name: "openpipeline_spatial"
  version: "build_main"
  info:
    test_resources:
--- a/target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata
+++ b/target/executable/convert/from_xenium_to_spatialdata/from_xenium_to_spatialdata
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component convert from_xenium_to_spatialdata"
-LABEL org.opencontainers.image.created="2025-06-06T07:01:22Z"
+LABEL org.opencontainers.image.created="2025-06-06T09:56:25Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="4e9723127ddb6353bf8f7f2ed65f880f77cbe764"
+LABEL org.opencontainers.image.revision="f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4"
 LABEL org.opencontainers.image.version="build_main"

 VIASHDOCKER
@@ -951,7 +951,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/incubator/convert/from_xenium_to_spatialdata:build_main'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_spatial/convert/from_xenium_to_spatialdata:build_main'
  fi

  # print dockerfile
--- a/target/executable/filter/subset_cosmx/.config.vsh.yaml
+++ b/target/executable/filter/subset_cosmx/.config.vsh.yaml
@@ -217,10 +217,10 @@ build_info:
  output: "target/executable/filter/subset_cosmx"
  executable: "target/executable/filter/subset_cosmx/subset_cosmx"
  viash_version: "0.9.3"
-  git_commit: "4e9723127ddb6353bf8f7f2ed65f880f77cbe764"
+  git_commit: "f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
-  name: "incubator"
+  name: "openpipeline_spatial"
  version: "build_main"
  info:
    test_resources:
--- a/target/executable/filter/subset_cosmx/subset_cosmx
+++ b/target/executable/filter/subset_cosmx/subset_cosmx
@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \

 LABEL org.opencontainers.image.authors="Dorien Roosen, Weiwei Schultz"
 LABEL org.opencontainers.image.description="Companion container for running component filter subset_cosmx"
-LABEL org.opencontainers.image.created="2025-06-06T07:01:22Z"
+LABEL org.opencontainers.image.created="2025-06-06T09:56:25Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline_spatial"
-LABEL org.opencontainers.image.revision="4e9723127ddb6353bf8f7f2ed65f880f77cbe764"
+LABEL org.opencontainers.image.revision="f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4"
 LABEL org.opencontainers.image.version="build_main"

 VIASHDOCKER
@@ -816,7 +816,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/incubator/filter/subset_cosmx:build_main'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline_spatial/filter/subset_cosmx:build_main'
  fi

  # print dockerfile
--- a/target/nextflow/convert/from_cosmx_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/convert/from_cosmx_to_h5mu/.config.vsh.yaml
@@ -231,10 +231,10 @@ build_info:
  output: "target/nextflow/convert/from_cosmx_to_h5mu"
  executable: "target/nextflow/convert/from_cosmx_to_h5mu/main.nf"
  viash_version: "0.9.3"
-  git_commit: "4e9723127ddb6353bf8f7f2ed65f880f77cbe764"
+  git_commit: "f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
-  name: "incubator"
+  name: "openpipeline_spatial"
  version: "build_main"
  info:
    test_resources:
--- a/target/nextflow/convert/from_cosmx_to_h5mu/main.nf
+++ b/target/nextflow/convert/from_cosmx_to_h5mu/main.nf
@@ -3340,11 +3340,11 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/convert/from_cosmx_to_h5mu",
    "viash_version" : "0.9.3",
-    "git_commit" : "4e9723127ddb6353bf8f7f2ed65f880f77cbe764",
+    "git_commit" : "f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
-    "name" : "incubator",
+    "name" : "openpipeline_spatial",
    "version" : "build_main",
    "info" : {
      "test_resources" : [
@@ -3834,7 +3834,7 @@ meta["defaults"] = [
  directives: readJsonBlob('''{
  "container" : {
    "registry" : "images.viash-hub.com",
-    "image" : "vsh/incubator/convert/from_cosmx_to_h5mu",
+    "image" : "vsh/openpipeline_spatial/convert/from_cosmx_to_h5mu",
    "tag" : "build_main"
  },
  "label" : [
--- a/target/nextflow/convert/from_spatialdata_to_h5mu/.config.vsh.yaml
+++ b/target/nextflow/convert/from_spatialdata_to_h5mu/.config.vsh.yaml
@@ -217,10 +217,10 @@ build_info:
  output: "target/nextflow/convert/from_spatialdata_to_h5mu"
  executable: "target/nextflow/convert/from_spatialdata_to_h5mu/main.nf"
  viash_version: "0.9.3"
-  git_commit: "4e9723127ddb6353bf8f7f2ed65f880f77cbe764"
+  git_commit: "f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
-  name: "incubator"
+  name: "openpipeline_spatial"
  version: "build_main"
  info:
    test_resources:
--- a/target/nextflow/convert/from_spatialdata_to_h5mu/main.nf
+++ b/target/nextflow/convert/from_spatialdata_to_h5mu/main.nf
@@ -3332,11 +3332,11 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/convert/from_spatialdata_to_h5mu",
    "viash_version" : "0.9.3",
-    "git_commit" : "4e9723127ddb6353bf8f7f2ed65f880f77cbe764",
+    "git_commit" : "f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
-    "name" : "incubator",
+    "name" : "openpipeline_spatial",
    "version" : "build_main",
    "info" : {
      "test_resources" : [
@@ -3815,7 +3815,7 @@ meta["defaults"] = [
  directives: readJsonBlob('''{
  "container" : {
    "registry" : "images.viash-hub.com",
-    "image" : "vsh/incubator/convert/from_spatialdata_to_h5mu",
+    "image" : "vsh/openpipeline_spatial/convert/from_spatialdata_to_h5mu",
    "tag" : "build_main"
  },
  "label" : [
--- a/target/nextflow/convert/from_xenium_to_spatialdata/.config.vsh.yaml
+++ b/target/nextflow/convert/from_xenium_to_spatialdata/.config.vsh.yaml
@@ -314,10 +314,10 @@ build_info:
  output: "target/nextflow/convert/from_xenium_to_spatialdata"
  executable: "target/nextflow/convert/from_xenium_to_spatialdata/main.nf"
  viash_version: "0.9.3"
-  git_commit: "4e9723127ddb6353bf8f7f2ed65f880f77cbe764"
+  git_commit: "f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
-  name: "incubator"
+  name: "openpipeline_spatial"
  version: "build_main"
  info:
    test_resources:
--- a/target/nextflow/convert/from_xenium_to_spatialdata/main.nf
+++ b/target/nextflow/convert/from_xenium_to_spatialdata/main.nf
@@ -3430,11 +3430,11 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/convert/from_xenium_to_spatialdata",
    "viash_version" : "0.9.3",
-    "git_commit" : "4e9723127ddb6353bf8f7f2ed65f880f77cbe764",
+    "git_commit" : "f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
-    "name" : "incubator",
+    "name" : "openpipeline_spatial",
    "version" : "build_main",
    "info" : {
      "test_resources" : [
@@ -3931,7 +3931,7 @@ meta["defaults"] = [
  directives: readJsonBlob('''{
  "container" : {
    "registry" : "images.viash-hub.com",
-    "image" : "vsh/incubator/convert/from_xenium_to_spatialdata",
+    "image" : "vsh/openpipeline_spatial/convert/from_xenium_to_spatialdata",
    "tag" : "build_main"
  },
  "label" : [
--- a/target/nextflow/filter/subset_cosmx/.config.vsh.yaml
+++ b/target/nextflow/filter/subset_cosmx/.config.vsh.yaml
@@ -217,10 +217,10 @@ build_info:
  output: "target/nextflow/filter/subset_cosmx"
  executable: "target/nextflow/filter/subset_cosmx/main.nf"
  viash_version: "0.9.3"
-  git_commit: "4e9723127ddb6353bf8f7f2ed65f880f77cbe764"
+  git_commit: "f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4"
  git_remote: "https://github.com/openpipelines-bio/openpipeline_spatial"
 package_config:
-  name: "incubator"
+  name: "openpipeline_spatial"
  version: "build_main"
  info:
    test_resources:
--- a/target/nextflow/filter/subset_cosmx/main.nf
+++ b/target/nextflow/filter/subset_cosmx/main.nf
@@ -3322,11 +3322,11 @@ meta = [
    "engine" : "docker|native",
    "output" : "/workdir/root/repo/target/nextflow/filter/subset_cosmx",
    "viash_version" : "0.9.3",
-    "git_commit" : "4e9723127ddb6353bf8f7f2ed65f880f77cbe764",
+    "git_commit" : "f502b8c8edb0ca78b2f3f1eb43dcbcd966525fb4",
    "git_remote" : "https://github.com/openpipelines-bio/openpipeline_spatial"
  },
  "package_config" : {
-    "name" : "incubator",
+    "name" : "openpipeline_spatial",
    "version" : "build_main",
    "info" : {
      "test_resources" : [
@@ -3832,7 +3832,7 @@ meta["defaults"] = [
  directives: readJsonBlob('''{
  "container" : {
    "registry" : "images.viash-hub.com",
-    "image" : "vsh/incubator/filter/subset_cosmx",
+    "image" : "vsh/openpipeline_spatial/filter/subset_cosmx",
    "tag" : "build_main"
  },
  "label" : [