3de8c3ee6d
Build pipeline: openpipelines-bio.openpipeline-spatial.build-main-cvdhc
Source commit: 408cceb53b
Source message: deploy: bbebaa1a26a30c55af33fa6818c12123f9fe4824
22 lines
1.1 KiB
Markdown
22 lines
1.1 KiB
Markdown
# openpipeline_spatial 0.1.0
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## NEW FUNCTIONALITY
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* `filter/subset_cosmx`: Added a component to subset COSMX data (PR #3, PR #9).
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* `convert/from_cosmx_to_h5mu`: Added converter component for COSMX data (PR #3, PR #9).
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* `mapping/spaceranger_count`: Added a spaceranger count component (PR #2).
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* `convert/from_spatialdata_to_h5mu`, `convert/from_xenium_to_spatialdata`, `convert/from_xenium_to_h5mu`: Added converter components for xenium data (PR #1, #10).
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* `convert/from_xenium_to_spatialexperiment`, `convert/from_cosmx_to_spatialexperiment`: Added converter components for Xenium or CosMx data to SpatialExperiment objects (PR #9).
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* `convert/from_cells2stats_to_h5mu`: Added a component to convert data resulting from Aviti Teton sequencers processed by Cells2Stats into an H5MU file (PR #15).
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* `workflows/qc/qc`: Added a pipeline for calculating qc metrics of spatial omics samples (PR #5).
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* `workflows/multiomics/spatial_process_samples`: Added a pipeline to pre-process multiple spatial omics samples (PR #7).
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* `convert/from_h5mu_to_spatialexperiment`: Added converter component for H5MU data to SpatialExperiment objects (PR #15).
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