Commit Graph

13 Commits

Author SHA1 Message Date
CI
9eac6fff21 Build branch main with version main (900f5ed)
Build pipeline: viash-hub.htrnaseq.main-2ww7f

Source commit: 900f5ed356

Source message: Runner: allow multiple input directories. (#38)
2025-02-13 16:08:09 +00:00
CI
34f9a5c19d Build branch main with version main (8eb391e)
Build pipeline: viash-hub.htrnaseq.main-xhqqt

Source commit: 8eb391e3eb

Source message: Revert Viash version back to v0.9.0
2025-01-17 14:36:29 +00:00
CI
37c4f5eb25 Build branch main with version main (d8c0c0f)
Build pipeline: viash-hub.htrnaseq.main-fc9g5

Source commit: d8c0c0f518

Source message: Create umi_length parameter and infer barcode length from sequence (#27)
2025-01-14 09:07:18 +00:00
CI
f86c73dccb Build branch main with version main (4a6fc35)
Build pipeline: viash-hub.htrnaseq.main-28fl2

Source commit: 4a6fc3588e

Source message: Revert "Update CHANGELOG"

This reverts commit c60a634969d34e989740db7ec82aaa1ef2e65fd0.
2025-01-10 16:33:56 +00:00
CI
5196df6cd0 Build branch main with version main (1e04724)
Build pipeline: viash-hub.htrnaseq.main-qcd6f

Source commit: 1e04724002

Source message: Integration tests: check contents of demultiplexing output (#25)
2024-12-20 11:27:04 +00:00
CI
51a1df053e Build branch main with version main (e3a7de4)
Build pipeline: viash-hub.htrnaseq.main-x6qhq

Source commit: e3a7de40e8

Source message: Fix for cutadapt's --no-indels not being applied (#24)
2024-12-19 14:11:12 +00:00
CI
51245a8027 Build branch main with version main (f6cf9bf)
Build pipeline: viash-hub.htrnaseq.main-8lw6k

Source commit: f6cf9bf06a

Source message: Avoid using main tag of biobox (#23)
2024-12-18 14:31:23 +00:00
CI
7385b3aa64 Build branch main with version main (da93558)
Build pipeline: viash-hub.htrnaseq.main-rr9vk

Source commit: da935587f3

Source message: Check for wellID and generalization of plate layout (#21)

Co-authored-by: DriesSchaumont <5946712+DriesSchaumont@users.noreply.github.com>
2024-12-17 17:23:57 +00:00
CI
554d5253fe Build branch main with version main (82647a4)
Build pipeline: viash-hub.htrnaseq.main-8kbhw

Source commit: 82647a421d

Source message: Assert that the Well ID matches the required format (#22)
2024-12-17 15:30:58 +00:00
CI
f2ff92c6ac Build branch main with version main (65dd41d)
Build pipeline: viash-hub.htrnaseq.main-vhms8

Source commit: 65dd41d8b1

Source message: Optimize spawning of processes
2024-11-05 17:26:35 +00:00
CI
b8abf8c490 Build branch main with version main (cf97972)
Build pipeline: viash-hub.htrnaseq.main-6f8s8

Source commit: cf9797232d

Source message: WIP: add component to parse STAR logs (#7)

* WIP: add component to parse STAR logs

* Add tests and logging
2024-09-17 09:02:15 +00:00
CI
bde35f120c Build branch main with version main (b98f636)
Build pipeline: viash-hub.htrnaseq.main-48gzk

Source commit: b98f6367d6

Source message: Add BAM statistics calculations on pool and well level (#6)
2024-08-29 12:41:46 +00:00
CI
044a3af7a9 Build branch main with version main (21831c2)
Build pipeline: viash-hub.htrnaseq.main-n8w4c

Source commit: 21831c2104

Source message: Fix well_demultiplex test
2024-08-29 08:10:20 +00:00